Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04308 and BL00432
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_04308___nifZ.1.5803.seq
# -bsequence dna-align/BL00432___nifZ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04308___nifZ-BL00432___nifZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04308___nifZ-BL00432___nifZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04308___nifZ
# 2: BL00432___nifZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1213
# Identity: 806/1213 (66.4%)
# Similarity: 806/1213 (66.4%)
# Gaps: 134/1213 (11.0%)
# Score: 2424.5
#
#
#=======================================
BSNT_04308___ 1 ATGATATATTTAGATAATAGTTCAACGACGAAGCCTTACGATGAAGTCTT 50
|||||.|||.|.||||||||||||||.||.||.||.||...||||.|.||
BL00432___nif 1 ATGATTTATCTTGATAATAGTTCAACAACAAAACCATATCCTGAATTATT 50
BSNT_04308___ 51 GAACGTATATGAAC-AGACAAGCAGCCGATACTTTGGCAATCCTTCATCT 99
..|..|.||||||| ||..||.||| ||.|.|||.|||||.||.||.|||
BL00432___nif 51 ACAAATTTATGAACAAGTAAATCAG-CGCTTCTTCGGCAACCCGTCGTCT 99
BSNT_04308___ 100 TTGCACCGATATGGAGCCGAAACGGAACAGCTGCT---TCAAGCAGCCAA 146
.|||||||..|.||.|..|||.||||.||..|||| |.|||| ||..|
BL00432___nif 100 CTGCACCGCCACGGCGTTGAAGCGGATCAATTGCTTTCTGAAGC-GCGGA 148
BSNT_04308___ 147 AA---ATCAAATCAAAAGGTCCTTAGGCCTAAAAAAATATGATATTGTAT 193
|| ||.||||| ||..|||..| ||||||||..|||||||.||.|
BL00432___nif 149 AACAGATTAAATC----GGCGCTTTCG-CTAAAAAATCATGATATCGTGT 193
BSNT_04308___ 194 TTACATCAGGCGCCACAGAAGCCAATA--ATGCGGCTTTAAAAGGAGCGG 241
||||.||.|||||..|||||||||||| |||..|||| |||||....|
BL00432___nif 194 TTACGTCCGGCGCTTCAGAAGCCAATAACATGGCGCTT--AAAGGCATTG 241
BSNT_04308___ 242 CTTTGTCA-AAGATAAAAACAGGCAAACATATCATTGCCACTTCTATTGA 290
|||||.|| |.|...|||| |||.||.|||||||||||..|.||.|||||
BL00432___nif 242 CTTTGGCACATGCGCAAAA-AGGAAAGCATATCATTGCTTCCTCCATTGA 290
BSNT_04308___ 291 ACATCCATCCGTTACGGAATCGTTAGAACAGCTGAAAGA-GTTGTTCGGG 339
|||.||.||.||.||||||||.||.||.|||||| |||| |...|||||.
BL00432___nif 291 ACACCCGTCTGTGACGGAATCCTTGGAGCAGCTG-AAGACGGCCTTCGGC 339
BSNT_04308___ 340 TTTGATATCACTTATCTTTCTGTGAATGAAGACGGATTTGTTTCTATTGA 389
|||||..|.||.||||||.||||..|.|...|.||.|||||||||.||||
BL00432___nif 340 TTTGAGGTTACATATCTTCCTGTCGACGGCCATGGCTTTGTTTCTCTTGA 389
BSNT_04308___ 390 AGATCTAAAAGCAGCCATCCGTCCCGATACCGTGCTTGTCAGCATGATGC 439
|||..|.|||..|||..||||....||.||..|.|||||.|||||.||||
BL00432___nif 390 AGACTTGAAACAAGCGCTCCGCAAAGACACGATTCTTGTAAGCATCATGC 439
BSNT_04308___ 440 ATGTGAACAATGAAGTCGGTTCCGTGCAGCCGATTGAAGCGGCA----GG 485
|.||.|||||||||...||...|.|.|||||..|.|||| | ||
BL00432___nif 440 ACGTCAACAATGAAACAGGCGTCATCCAGCCTCTGGAAG----AAATCGG 485
BSNT_04308___ 486 GGAAGTGCTGAA--GAAGCACCCGAACAT--TTTGTTCCACGTCGATTAT 531
|.||.|..|.|| .||.|||..|..||| ||| |||||.|||.||
BL00432___nif 486 GAAAATCGTAAAAGAAAACACAAGGGCATACTTT----CACGTTGATCAT 531
BSNT_04308___ 532 GTGCAGGGCATCTATAAAGTGCCCTTGGCAATTGAAAA-------GGCCG 574
||.|||||||||.|.||.||.||..||| |.| |||.|
BL00432___nif 532 GTTCAGGGCATCAACAAGGTTCCGCTGG-------ACATCTCCGGGGCAG 574
BSNT_04308___ 575 GCATTGATCTATGTTCAATTTCGGGGCATAAATTTCACGGCCTAAAGGGG 624
.||||||.||.|||.||||.|||||.||.||||||||||||.|||||||.
BL00432___nif 575 CCATTGACCTTTGTACAATCTCGGGTCACAAATTTCACGGCTTAAAGGGA 624
BSNT_04308___ 625 ACAGGCGCACTTATTGTAAAAG-AGGGAACACGCCTTATTCCGCTCATAA 673
|||||.||.||.|||.||||.| |.|||.|.|| |||.||||..|.||..
BL00432___nif 625 ACAGGAGCCCTCATTCTAAACGAACGGATCTCG-CTTTTTCCTTTGATTT 673
BSNT_04308___ 674 CGGGAGGCTCTCAGCA----AAAAGGCATACGGGCCGGAACAGAACATAC 719
|.|||||....||||| ||.||| ||.||.|||||.|||.||||
BL00432___nif 674 CCGGAGGAGAACAGCAGAACAACAGG----CGTGCTGGAACTGAAAATAC 719
BSNT_04308___ 720 TGCTGGTGCGGTTTCGCTTGCCAAGGCCATTAATCTTGCC---TCTGCTG 766
.||.||.||.|||.|.|||||.||.||.||.||| |||.| .|.| |
BL00432___nif 720 CGCCGGCGCCGTTACACTTGCAAAAGCGATCAAT-TTGTCAAAACAG--G 766
BSNT_04308___ 767 ATTTTGACACACGGCTT-----GACACGATGACTGCCGCAAAGGAAT--- 808
|||.|.|| || || ||....||.|..||.|||| |||
BL00432___nif 767 ATTATAAC-CA----TTATATAGAAGAAATAAAGGCGGCAA---AATCAG 808
BSNT_04308___ 809 -TGTTTATGAAAAGGCT----GAG-TGAAATTGAGGGCGTCGTTATCAAC 852
| |||||.||...||| ||| ||||| ||.||..|..|.||.
BL00432___nif 809 CT-TTTATCAAGGAGCTAAAAGAGCTGAAA-----GGTGTTATATTAAAT 852
BSNT_04308___ 853 ACGCCTCAAATGAATAGCGCGCCGCACATTATTAATTTCTCTGTACCGGG 902
|||||..||...||.|||||||||||.||.||.|||||.||.||.|| ||
BL00432___nif 853 ACGCCGGAAGAAAACAGCGCGCCGCATATCATCAATTTTTCCGTTCC-GG 901
BSNT_04308___ 903 GATT-AAAGCGGAAGTGCTTTTACACATGCTTGAGGAACAGGATATATTC 951
|||| ||.||.||.||.|||||.||.|||||.|||||.|.||||||.|||
BL00432___nif 902 GATTGAAGGCTGAGGTCCTTTTGCATATGCTAGAGGAGCGGGATATTTTC 951
BSNT_04308___ 952 GTCTCCACAACATCGGCTTGCTCGGCAAAAGAACATAAGCCCAGCAAGGT 1001
||.||.||.|||||.||.|||||..|||||.|.||||||||.||||||||
BL00432___nif 952 GTATCGACGACATCAGCATGCTCTTCAAAACAGCATAAGCCGAGCAAGGT 1001
BSNT_04308___ 1002 TCTCTTAGAGATGGGCAAAGGAGAGCAGAT--TGCCGGAAGCAGCATCAG 1049
.||.|||||.|||||.|||||.|| ||.| .|||..||||||||||||
BL00432___nif 1002 GCTTTTAGAAATGGGAAAAGGTGA--AGGTGCGGCCTCAAGCAGCATCAG 1049
BSNT_04308___ 1050 AATCAGTTTAAATTACAGCCAGA--CAAGCGA-TGT-GGCAGAACCGTTT 1095
||||||..|.|..|||.|..|.| ||.|.|| ||| ||| ||||||
BL00432___nif 1050 AATCAGCATGACGTACCGGGATAATCATGAGATTGTCGGC----CCGTTT 1095
BSNT_04308___ 1096 ATGAACGCGCTTCGTCCTGGTATCAAA------------AAATTAAGGGA 1133
|||| ||.||| |.||| |||.|||..|.
BL00432___nif 1096 ATGA--------CGGCCT----TAAAAGAAAGTTTACACAAACTAAAAGG 1133
BSNT_04308___ 1134 AATGATGAGGTAG 1146
|||.|||||||||
BL00432___nif 1134 AATTATGAGGTAG 1146
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