Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04307 and BL00431

See Amino acid alignment / Visit BSNT_04307 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:26
# Commandline: needle
#    -asequence dna-align/BSNT_04307.1.5803.seq
#    -bsequence dna-align/BL00431___thiI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04307-BL00431___thiI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04307-BL00431___thiI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04307
# 2: BL00431___thiI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1254
# Identity:     887/1254 (70.7%)
# Similarity:   887/1254 (70.7%)
# Gaps:          96/1254 ( 7.7%)
# Score: 2999.0
# 
#
#=======================================

BSNT_04307         1 ATGAATTACGATCATATATTAATTCGTTTTGGGGAAATTTCGACCAAAGG     50
                     ||||||.|.||..|.||.|||||..|.|||||.||||||||.||.|||||
BL00431___thi      1 ATGAATGAGGACTACATTTTAATCAGATTTGGCGAAATTTCAACAAAAGG     50

BSNT_04307        51 CAAAAACAGAAAAAGCTTTATT---GAGCGCTTAAAACAAAACATCAGAC     97
                     .||.||.||  |||||||| ||   ||.|||.|.|||..|||.||||.|.
BL00431___thi     51 AAAGAATAG--AAAGCTTT-TTGTCGATCGCCTGAAAAGAAATATCAAAA     97

BSNT_04307        98 TCGTTTTGAAAGACTATCCGAA-------TTTAAAATACTTTTCCAACA-    139
                     |.||.|||...|| |.||||.|       ||...|||       ||||| 
BL00431___thi     98 TGGTCTTGCGCGA-TTTCCGCAACGTCCGTTATGAAT-------CAACAC    139

BSNT_04307       140 GGGATCGTATGACGATTACATTAAATGGAGAGGATCCTGAGGCTCTTTTT    189
                     |.||..|.|||||..|...||||||.|||||.||..||||.|||.|..|.
BL00431___thi    140 GCGACAGAATGACTCTCGTATTAAACGGAGAAGACGCTGAAGCTGTAATG    189

BSNT_04307       190 CCTCATTTAAAGCAAGTGTTTGGGATTCAAAGCTTCAGCCTGGCAATTAA    239
                     .|||.|.|.||.||.||.||.||.||.|||...|||||.||.||..|.||
BL00431___thi    190 GCTCGTCTGAAACACGTTTTCGGCATCCAATCGTTCAGTCTTGCCGTGAA    239

BSNT_04307       240 GTG--TGACAGCCGCCTTGATGATATTAAGGCAACCGCACTAAAG-----    282
                     |||  .||||           |||.|   ||.||  |||.|||||     
BL00431___thi    240 GTGCCGGACA-----------GATCT---GGAAA--GCATTAAAGAGACG    273

BSNT_04307       283 ------GCTATC----AAAGATCAGTATAAACCAGGTGATACGTTTAAAG    322
                           ||| ||    .||||.||.||.||.||.||.|||||.|||||||
BL00431___thi    274 GCGCTCGCT-TCTGTTCAAGAACAATACAAGCCCGGGGATACCTTTAAAG    322

BSNT_04307       323 TCGCGACAAAGAGAGCGTATAAGCAATTTGAATTAGATACAAACCAAATG    372
                     |..||||.||.||.||.||||||||.|||||||||.|||||||..|.|||
BL00431___thi    323 TATCGACGAAAAGGGCTTATAAGCAGTTTGAATTAAATACAAATGAGATG    372

BSNT_04307       373 AACGCTGAAATCGGCGGCCATATTTTGCGAAATACAGAAGGAT-TGACGG    421
                     ||.||.||.|||||.||.||.||||||||.||.||.| |.||| |.||.|
BL00431___thi    373 AATGCCGAGATCGGAGGACACATTTTGCGCAACACCG-ACGATCTTACCG    421

BSNT_04307       422 TCGATGTTCGCAACCCAGACATCCCGCTCAGAATCGAAATCAGGGAAGAA    471
                     |.||.||.|.|..|||.|||||||...|..|.||||||||..|||||||.
BL00431___thi    422 TTGACGTCCACTCCCCGGACATCCATTTGCGTATCGAAATTCGGGAAGAT    471

BSNT_04307       472 GCAACATTTTTGACAATTCGTGATGAAAAAGGTGCAGGCGGGTTGCCAGT    521
                     ||.||.|.|||||||.|.||.||||||||||||||.|||||..||||.||
BL00431___thi    472 GCCACGTATTTGACATTCCGGGATGAAAAAGGTGCGGGCGGACTGCCGGT    521

BSNT_04307       522 TGGTTCAGC--AGGAAAAGCGATGCTGATGCTTTCTGGCGGTTTTGACAG    569
                     .||  .|||  |||||||||||||||.|||.|.||.|||||..|.|||||
BL00431___thi    522 CGG--AAGCGGAGGAAAAGCGATGCTTATGATATCCGGCGGAATCGACAG    569

BSNT_04307       570 CCCTGTTGCCGGTTTTTATGCGATGAAACG-GGGCTTGTCGGTAGAAGCT    618
                     ||||||||||||.||.|||||.|||||.|| ||.|||| .|.|.|||||.
BL00431___thi    570 CCCTGTTGCCGGGTTCTATGCCATGAAGCGCGGACTTG-AGATCGAAGCC    618

BSNT_04307       619 GTTCATTTCTTCAGCCCGCCATACACAAGCGAGCGCGCAAAGCAAAAGGT    668
                     |||||.||.||||||||||||||.|||||||||||.||.||||||||.||
BL00431___thi    619 GTTCACTTTTTCAGCCCGCCATATACAAGCGAGCGGGCCAAGCAAAAAGT    668

BSNT_04307       669 AATGGATCTGGCGAAATGTCTGTCCCG-TTTTGGGGGAAGCATGACACTT    717
                     .||.|||||..|.||..|.|| |.|.| ||||||.|||..|||.|..|||
BL00431___thi    669 GATCGATCTTACTAAGCGGCT-TACGGCTTTTGGCGGAGACATCAAGCTT    717

BSNT_04307       718 CATATTGTTCCATTTACAAAAACGCAAGAGCTCATTCAAAAACAAATTCC    767
                     |||||.|||||.|||||||||||.|||||||||||||||||.||.|||||
BL00431___thi    718 CATATCGTTCCGTTTACAAAAACTCAAGAGCTCATTCAAAAGCAGATTCC    767

BSNT_04307       768 TGAAAATTACACAATGACGGCAACCCGCCGCCTCATGCTTCAGATCGCCG    817
                     .||.||.||..|.||||||||.|||.|..|.||.|||||.||||||||||
BL00431___thi    768 CGAGAACTATTCCATGACGGCGACCAGAAGGCTGATGCTCCAGATCGCCG    817

BSNT_04307       818 ACAGAATCAGAGAA----AAGAGAAACGGGCTTGCCGTTATTACGGGAGA    863
                     |||.|.|..|.|||    |    .||||.||||||..|..||||.||.||
BL00431___thi    818 ACAAACTGCGCGAACGCCA----TAACGCGCTTGCGATCTTTACAGGGGA    863

BSNT_04307       864 AAGCCTCGGTCAGGTAGCGAGCCAAACGCTTGAAAGCATGTATGCAATTA    913
                     |||||||||.|||||.||.|||||.||||||||||||||||||||.||.|
BL00431___thi    864 AAGCCTCGGCCAGGTGGCAAGCCAGACGCTTGAAAGCATGTATGCCATCA    913

BSNT_04307       914 ATGCGGTGACGTCAACACCGATTTTGCGTCCGCTAATCGCCATGGACAAA    963
                     |.|||||.|||...||.|||.|||||||.||..||||||.||||||.||.
BL00431___thi    914 ACGCGGTCACGAGCACGCCGGTTTTGCGCCCTTTAATCGGCATGGATAAG    963

BSNT_04307       964 ACAGAAATCATCGAAAAATCACGGGAAATTGGCACATATGAGACAAGCAT   1013
                     ||.|||||||||||||||.|...||||||.|..||.||.||.|..|||||
BL00431___thi    964 ACGGAAATCATCGAAAAAGCGAAGGAAATCGATACGTACGATATCAGCAT   1013

BSNT_04307      1014 TCAGCCGTTTGAAGACTGCTGCACGATCTTTACACC----GCCAAGCCCG   1059
                     .|..||||..|||||||||||||||||||||||.||    ||    .|||
BL00431___thi   1014 ACGTCCGTACGAAGACTGCTGCACGATCTTTACGCCTTCTGC----GCCG   1059

BSNT_04307      1060 AAAACACGCCCTAAAAAAGAGAAAATTGAACACTTTGAAAGCTTTGTTGA   1109
                     |||||.||.||.||||||||||||||.||||||||||||||||.....||
BL00431___thi   1060 AAAACGCGTCCGAAAAAAGAGAAAATCGAACACTTTGAAAGCTACACAGA   1109

BSNT_04307      1110 TTTCGAGCCGTATATTCAA-GAAGCGGTAGATAACATTGAGACAATGACC   1158
                     ||||||.|||..|| |||| |||||.||.||.||||..||.||.||    
BL00431___thi   1110 TTTCGAACCGCTTA-TCAACGAAGCTGTGGAAAACACGGAAACGAT----   1154

BSNT_04307      1159 CTGTAT--AGCGAACAA----GAAGCTAACGATAAATTCGCTGAACTCTT   1202
                      |||.|  ||| |.|||    |||.|.||.|||.||||.||.||..|.||
BL00431___thi   1155 -TGTTTTGAGC-AGCAAAGCGGAAACGAAAGATCAATTTGCGGATTTTTT   1202

BSNT_04307      1203 TTAA   1206
                     .|||
BL00431___thi   1203 CTAA   1206


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