Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04576 and BL00427
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:44
# Commandline: needle
# -asequence dna-align/BSNT_04576___yubD.1.5803.seq
# -bsequence dna-align/BL00427___yubD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04576___yubD-BL00427___yubD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04576___yubD-BL00427___yubD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04576___yubD
# 2: BL00427___yubD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1978
# Identity: 907/1978 (45.9%)
# Similarity: 907/1978 (45.9%)
# Gaps: 797/1978 (40.3%)
# Score: 1593.0
#
#
#=======================================
BSNT_04576___ 1 ---------------------------------------------AT--- 2
||
BL00427___yub 1 ATGAGTCAATCTGATGTGGCGATCCCGAGCTCTAAAAAAATCGGCATTCC 50
BSNT_04576___ 3 GAAGACAAAACACTATTGGGTGATTTCTTTGCTCGCCGTCTTAGCGGT-C 51
|||| ||||.|.|.|||| |.||.|||.||.| |
BL00427___yub 51 GAAG---------TATTTGATCATTT---------CGGTTTTAACGATAC 82
BSNT_04576___ 52 GGGCCGGGATTGATGTCTAACACGGC------ATTGTC------------ 83
.|||| |||| ||| |||.||
BL00427___yub 83 TGGCC---ATTG-----------GGCCGCAATATTTTCTTAATCTTTCCT 118
BSNT_04576___ 84 -----GTCAGTTCAAGGCCTTGTTCAGAAAGCGGTTGGAACAAGTGTCTT 128
.|||| |||||.|.|..||||.||.| |.|||
BL00427___yub 119 ATACGCTCAG-TCAAGTCGTCATTCAAAACG--------------GACTT 153
BSNT_04576___ 129 CA-----CATCAG----TA-----AATCCG---ATATTGATCGGC-AATA 160
|| ||.|.| || |.|||| ||.|||| | |||.
BL00427___yub 154 CATTTGTCACCGGACGATATGCGGATTCCGTCCATTTTGA----CAAATC 199
BSNT_04576___ 161 TGGCCTTTGC-CTTGTTAGTTCCGGCAGGACCGCTGCT------GAGGAA 203
|.||.||||| ||.|.| ||||||...||||...|..| ||||
BL00427___yub 200 TTGCTTTTGCTCTCGGT-GTTCCGCTTGGACGTATATTTTCAAGGAGG-- 246
BSNT_04576___ 204 AAAATTCGG--TGCGCGTCCCGTCTATCTGGC-TTCATTACC-TGTCTTT 249
||||| |.|| |..|.| |||.|||.| .||||.||| |.|.|||
BL00427___yub 247 ----TTCGGCATTCG-GAACAG-CTACCTGACACTCATCACCTTATTTTT 290
BSNT_04576___ 250 ATACTAGGCTCACTGCTCATCGCATGTTCAGGCGATATTGCATGGATGGC 299
||.| |||||.|||.||..|||||.||||
BL00427___yub 291 ATGC--GGCTCGCTGATCGACGCATTTTCA-------------------- 318
BSNT_04576___ 300 GGCAGG-------GCGCTTTTTACAGG--GGGCGGCA-ACAGGCGTCATG 339
||||| .|||||.|||..|| |||.| | |||.|..|.|||
BL00427___yub 319 -GCAGGCTTGTTTTCGCTTCTTATCGGAAGGGTG--ATACAAGGATTATG 365
BSNT_04576___ 340 CT----GATGATTAT-------GATTCCAATGCTTGTACTGTC--ATTCC 376
|| .||| |||| ||||| .|.||||| |||
BL00427___yub 366 CTCCGGAATG-TTATTTTTGACGATTC--------TTCCTGTCAAATT-- 404
BSNT_04576___ 377 CGATT--------GAACGCAGGAACTATGCA--CTGCTTGTGCTGATCG- 415
|||| |||| .||| |..||| .||.||.||.|..|||
BL00427___yub 405 -GATTTCGTTTCCGAAC-AAGG---TCCGCAATTTGTTTTTGTTTTTCGT 449
BSNT_04576___ 416 -----GGGGATTCTATGG---TTCTGTTATCATCGGCACAATCCTCGGAA 457
|.|||||.|..|| ||||| .||||||..|..|..|.||..
BL00427___yub 450 CATTAGCGGATTGTTCGGCGCTTCTG---CCATCGGAGCGGTTTTTGGTT 496
BSNT_04576___ 458 CCATTGCAACAAGCTGCGG--GCATTGGAGATGGCTGTTTTTCAT----- 500
||.|..||...||| |||| ||| |||.|.|||.|||||.| ||
BL00427___yub 497 CCCTGTCACTCAGC-GCGGATGCA-TGGCGCTGGGTGTTTAT-ATTAAAT 543
BSNT_04576___ 501 ---------------CTTTGGCACCTTGTCCCTGATCGGTGTCGCGGTGA 535
||||| ||||| |||||||..||
BL00427___yub 544 ATTTGTTCGCCTGTCCTTTG---CCTTG----TGATCGGCTTC------- 579
BSNT_04576___ 536 GCTATTTCTTT-----------CTTC--ATGA---CGAGCATCACGGGGC 569
.||||||| |..| |||| .||||||||
BL00427___yub 580 ---TTTTCTTTGCCGAAACAAGCAGCGGATGAGCGGGAGCATCA------ 620
BSNT_04576___ 570 GTCG---GATCAAGAACAGCCGCTTGATCATGCGGAAATTCT--TTTATC 614
.||| ||| ||| ||.|.||.|| |.|||| ||| ||..||
BL00427___yub 621 TTCGATTGAT-AAG-ACGGGCGTTT--TTATGC------TCTCATTGCTC 660
BSNT_04576___ 615 -----TGTTTT--CCTTGCCGC--AGCCTCA----GC--------GGT-T 642
|||||| |..|||||| | ||| || ||| |
BL00427___yub 661 ATGGTTGTTTTGACGGTGCCGCTTA---TCAATTTGCAGAAGACGGGTGT 707
BSNT_04576___ 643 TCATTCATTTTTCTGCAAAAATG-GGGGCTGTCATCGGGTTATGTATGGA 691
||||||.|||| ||| |.|||.||..| ||.||...|||
BL00427___yub 708 TCATTCTTTTT---------ATGTGTGGCCGTTCT----TTTTGGCCGGA 744
BSNT_04576___ 692 T---TGGTTTCGGGGTGACGTTATGTTTGCTCATTGGTCTATTGA-TTG- 736
| |..|||.||.|| |||||| |||| ||..|| |||
BL00427___yub 745 TTCATCATTTTGGCGT-------TGTTTG-TCAT-----TACAGACTTGC 781
BSNT_04576___ 737 ------TGGAATATAAAGTGAAAAACCCATTCATATCTATTAAACTGATG 780
.||||..|...||| ||..|||.| || ||||
BL00427___yub 782 GCGCCCGGGAACCTCTTGTG-----CCGTTTCGT-TC------ACTG--- 816
BSNT_04576___ 781 CTGCTGC-CAAAA----------------------CCGGTGCTTGGCTTA 807
||.|.| ||||| |||.|||||..|..|
BL00427___yub 817 -TGGTCCGCAAAAGCTGTTTCCGGGACAGTCATGGCCGTTGCTTCACACA 865
BSNT_04576___ 808 TTG--ATCATAG------CTGCAGGGACGAT-AACGGTAGCTGTCAGCCT 848
||| |||||.| .|||.|| ||| ||||| .|
BL00427___yub 866 TTGCAATCATTGTTTCCCTTGCCGG---GATAAACGG-----------AT 901
BSNT_04576___ 849 GTCTG-----CTTTTCA-AGGCTTGCTCCGTCAAATGTATGATATTTCTC 892
.|.|| |.||.|| |||||| || |.|||
BL00427___yub 902 TTTTGGAAAACATTGCAGAGGCTT-CT----------TTTGA-------- 932
BSNT_04576___ 893 AGGAGCATCTCATTCTTTTACACTTGACTCTTTTAATCGGAG------TG 936
.|||||..||..||||| |.|||..|.||| |||.|| |.
BL00427___yub 933 --AAGCATGACACGCTTTT--ATTTGTGTTTTT---TCGCAGGGATTTTA 975
BSNT_04576___ 937 GCGATCGCGGCCATTTTGAGCGCTCTGTTTTATGATAAAGTCGGACCAGG 986
||.| |.|||.|..|.|||.|.||.||.||||||.|..|.||..|.||
BL00427___yub 976 GCTA---CTGCCGTGCTCAGCACGCTTTTGTATGATCATTTTGGCGCCGG 1022
BSNT_04576___ 987 GATGCTCGGTATTATCGGCGGACTCATTCTCGTCTTTGTGAATTTTCAAT 1036
..|||||||...|||||||| |||||..|||..|||..
BL00427___yub 1023 ATTGCTCGGCTGTATCGGCG-------------CTTTGGAAATGATCATC 1059
BSNT_04576___ 1037 GGCTGCAT---ATGCAGGATC-GATCATC-----------------TCTT 1065
|.|.|.|| |||.| |||| |.|||.| ||.|
BL00427___yub 1060 GTCGGTATGGAATGGA-GATCGGTTCAACCCGGTGTTTCGATGGAGTCGT 1108
BSNT_04576___ 1066 TATATGTTCGCGGCACTGTTTATCATGCT-TGCAGCGGGAACAGGCCTGA 1114
|||||.|||..| |||||| |||| .|||||||
BL00427___yub 1109 TATATCTTCATG---CTGTTT----TGCTGGGCAGCGG------------ 1139
BSNT_04576___ 1115 CAGTCG-CCGCAGGG--CTGAT---GGGAGCTGCCATGGG--AGGCCCGC 1156
|| |.|||.|| .||.| |||||| || |||| .|| |||
BL00427___yub 1140 ----CGTCAGCATGGTATTGGTATCGGGAGC-GC--TGGGCACGG--CGC 1180
BSNT_04576___ 1157 -TGCCTGATTTGGTCAAGAGAATGAC--AGCT-------GTTCAGTTT-- 1194
||||.| |||.|.|.|| |||| |.||.||||
BL00427___yub 1181 TTGCCGG---------AGATATTCACCAAGCTTCAAAACGCTCGGTTTCG 1221
BSNT_04576___ 1195 -TTAAGATTGTTTGTCTATATGG--GAGTTCCTATTC--------TCATC 1233
||.|..||.|..| |.||.|.| | ||.|||...| |.|||
BL00427___yub 1222 CTTCACTTTATCCG-CAATTTCGCCG-GTGCCTGGGCTGCACCGGTGATC 1269
BSNT_04576___ 1234 GGCTTTTTCACGAAAAAAGATGCTGCCA--GACAAAGCGGTTCGGTACAG 1281
||||..|| ||||.|.| .|.||.|||||.|..|||..
BL00427___yub 1270 GGCTGGTT------------TGCTTCAATGAAGAATGCGGTGCACTACGA 1307
BSNT_04576___ 1282 GATTCTATGATGACTGCTTATCA-------TGATC-------TCTTCT-- 1315
|||..||.||.|| |.||||| ||||| ||..||
BL00427___yub 1308 GATGATAAGAGGA---CATATCAGTGAAGCTGATCCTGAAATTCAGCTGG 1354
BSNT_04576___ 1316 -----TCA------TTTC----TTTTATCCTTAGCG----TGCTGCTCGT 1346
||| .||| ||||.||...|||| |.|||.|.||
BL00427___yub 1355 AATTGTCAAAAATGATTCGTGATTTTGTCAGCAGCGGGCTTTCTGTTGGT 1404
BSNT_04576___ 1347 ----------------CTGCCTGT--CATT-TTGTATGAATGCCACTGGA 1377
|.||||.| .||| |||.| ||||||| ||
BL00427___yub 1405 GATGCGAAGAACATGGCGGCCTATACGATTGTTGCA--AATGCCA---GA 1449
BSNT_04576___ 1378 ATGGGGCACAAGC---------TGGCACATAAACCAC---------ATGA 1409
| |||| ||||.||| |.||| |.||
BL00427___yub 1450 A--------AAGCTTCAGCCCTTGGCGCAT--ATCACGATTTGTTTACGA 1489
BSNT_04576___ 1410 TA-----------AAGCGAAAACA-GCTTCGGAAAAACCGGCCGTTTCAG 1447
|| ||||...|.|| |||| ||.|.||||
BL00427___yub 1490 TACTGCTCTGGCTAAGCATCATCATGCTT-----------GCGGCTTCA- 1527
BSNT_04576___ 1448 CAGAAGGTTTGTCG-AAGGCA---ACTGTCAAATCTTATAAAGTAATAAA 1493
.||| | |||||| ||.|
BL00427___yub 1528 -------ATTG--GAAAGGCAGCGACCG---------------------- 1546
BSNT_04576___ 1494 TGATACGGAATATCG--------TAA-----------TGC---AC---TC 1518
||.|.||||.|||| .|| ||| || ||
BL00427___yub 1547 -GAAAAGGAAGATCGCTCGTTCAGAAGCGCCTTCGCCTGCCAGACCCTTC 1595
BSNT_04576___ 1519 AG-AAATTTACAAAA----ATAG----- 1536
|| ||.|..|||||| ||||
BL00427___yub 1596 AGCAAGTCAACAAAAGGAGATAGGATAA 1623
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