Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04298 and BL00424
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_04298___yteJ.1.5803.seq
# -bsequence dna-align/BL00424___yteJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04298___yteJ-BL00424___yteJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04298___yteJ-BL00424___yteJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04298___yteJ
# 2: BL00424___yteJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 552
# Identity: 339/552 (61.4%)
# Similarity: 339/552 (61.4%)
# Gaps: 90/552 (16.3%)
# Score: 895.0
#
#
#=======================================
BSNT_04298___ 1 ATGGACGCGACATATGA---AGAGTTAGAGCGCAATGACAT------CAA 41
|||||.|.|||.||||| |.|| ||.|..||||| || |.|
BL00424___yte 1 ATGGATGTGACTTATGATGGAAAG---GATCATAATGA-ATTATCGCCGA 46
BSNT_04298___ 42 AGGCCCGC----------AAGAAGCGGAGCAGC-TG-ACA-CATGCCTAT 78
|.|.|.|| |||||.|||..|.|| || |.| |||||||||
BL00424___yte 47 ATGTCGGCGTTTCCAGGGAAGAATCGGCCCCGCATGTAGAGCATGCCTAT 96
BSNT_04298___ 79 GCTGGCTTTTGGGTTC-----GTTTCTGGGCTTTCCTGCTTGATTGGCTC 123
||.|| ||||.||.|| |||| |||||.||||||||..||.|
BL00424___yte 97 GCCGG-TTTTTGGATCAGGCTGTTT----GCTTTTCTGCTTGACGGGGT- 140
BSNT_04298___ 124 GTGATATGGG--GATTAAACCA-TTTGCTCGTTTCTCCCCTCTTTACCGT 170
||.|||.|| |..|.|||.| ||.|| .|||||.|||.|.||.|.|.|
BL00424___yte 141 -TGTTATCGGCAGCATCAACAACTTAGC-GGTTTCACCCGTTTTCAGCCT 188
BSNT_04298___ 171 ATTGGATCTGCCGAAAACATCCGGCATGTTTACCTTCTCGGCCTACA--- 217
..||.|.||.||.|||..|||.||..|.||.|||||.||| ||..|
BL00424___yte 189 GCTGAACCTCCCTAAAGAATCAGGGTTTTTCACCTTTTCG--CTTTATTC 236
BSNT_04298___ 218 --GTGTGACAACG--CTTATTGTGTATCTTGCCTATTTCGCACTAATGAC 263
.||||||..|| ..|||| |.||||.||.||.|..||.|||||
BL00424___yte 237 TTTTGTGACGGCGGCAGTATT-----TTTTGCTTACTTTGTCCTGATGAC 281
BSNT_04298___ 264 AAAATACTTCAGGCAGACGCTTGGTAAAATGGTGTTCGGCCTCAAAGTGG 313
.||.||.|||.|.||||||.|.||.||.|||||.|||||.||.||.||.|
BL00424___yte 282 GAAGTATTTCGGACAGACGTTGGGCAAGATGGTATTCGGGCTGAAGGTCG 331
BSNT_04298___ 314 TTTC---TGT----GAAGCGAGATAGCAAGCTGACATGGAGTACAGTGAT 356
|.|| ||| ||| |.|| .||||||||||..|...||..|
BL00424___yte 332 TGTCGCTTGTCCCGGAA-----AAAG--GGCTGACATGGGATGTGGTCCT 374
BSNT_04298___ 357 TTTTCGTGAAGTGGTT----GGACGGTATATTGATAAGA-TTTGGATTTT 401
.|||.|.|| ||| ||.||.||||| .||.| |||..||.||
BL00424___yte 375 GTTTAGGGA----GTTTATCGGCCGCTATAT---CAACAGTTTATATATT 417
BSNT_04298___ 402 A--TATATCGTTGTTGCTTTTTCACCTACAAAACAAGGGATTCATGATTA 449
| |||.||||.|..||.|||||.||||..||||||||||||||.||||.
BL00424___yte 418 ACGTATCTCGTAGCAGCGTTTTCGCCTAAGAAACAAGGGATTCACGATTT 467
BSNT_04298___ 450 CATCGCGGATACCACCGTGGTGCATGAAAAATTATACCGCAAATAA---- 495
|.|.|||||.||..|.||..|.|||||||||.|.||.||.|||.||
BL00424___yte 468 CTTTGCGGACACTGCGGTTATCCATGAAAAACTGTATCGAAAAAAAGACT 517
BSNT_04298___ 495 -- 495
BL00424___yte 518 GA 519
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