Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04294 and BL00420
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:25
# Commandline: needle
# -asequence dna-align/BSNT_04294___ytxK.1.5803.seq
# -bsequence dna-align/BL00420___ytxK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04294___ytxK-BL00420___ytxK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04294___ytxK-BL00420___ytxK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04294___ytxK
# 2: BL00420___ytxK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1052
# Identity: 697/1052 (66.3%)
# Similarity: 697/1052 (66.3%)
# Gaps: 127/1052 (12.1%)
# Score: 2207.5
#
#
#=======================================
BSNT_04294___ 1 ATGCAAAAAGA-CCATGTAGGTGCGGTGTATGA---GCTGTTAAACGAAG 46
||||||||..| ||| ||.|...||.|.||||| |||
BL00420___ytx 1 ATGCAAAACTATCCA-GTCGAAACGATTTATGAATGGCT----------- 38
BSNT_04294___ 47 CCGCGATTATGATAAAGAA--TGAATT---------------GCAGATTT 79
|||.||||.| .|||.| ||||||..
BL00420___ytx 39 ---------TGACAAAGGAGCGGAAGTCATCGCACGCGATCGGCAGATCC 79
BSNT_04294___ 80 CATATATAGAGGCGCTGGCCGAAGCAGGAGAAATGTATTTTCTTGAAAAA 129
|.||.|||||.|...||||.|||||.|||| |.|.| |||||.|.|
BL00420___ytx 80 CTTACATAGAAGGATTGGCGGAAGCCGGAG--AGGCA--TTCTTTACA-- 123
BSNT_04294___ 130 ACGGATCAGCTGAAACTGCCTGCTGATCAGA--AAACCAAACAACTTCAG 177
||.||.||.| ||.||..||| .||.|| ||.||.||||| .||
BL00420___ytx 124 --GGTTCTGCGG--ACCGCGGGCT-TTCCGAAGAAGCCGAACAA---AAG 165
BSNT_04294___ 178 GCTCTGCTTGAAAAAGCGGAATTCGGCACGT-----------ATGAG--- 213
| ||||..|.|.|| ||||| ||| | |||
BL00420___ytx 166 G-------TGAAGGATCTGA--TCGGC-CGTGCGCGCTTTTCA-GAGTGC 204
BSNT_04294___ 214 ---CATGAGTGGGTACGCAAGGCTTTTCAGCTTGCCGTCCTTAAAGGAAT 260
|||||||.|.||||.||.||.||.|||||||||.|.||.|||||...
BL00420___ytx 205 AGTCATGAGTCGATACGGAAAGCCTTCCAGCTTGCCATACTGAAAGGCCA 254
BSNT_04294___ 261 GAAAGATATCTCTCATCCAAACAGACAAATGACGCCGGATACGATCGGGC 310
|||||||||..|||||||.|||||.||.||||||||.|||||||||||..
BL00420___ytx 255 GAAAGATATTCCTCATCCGAACAGGCAGATGACGCCCGATACGATCGGAT 304
BSNT_04294___ 311 TTTTCATCAGCTATTTGGTGAATAAGTTTATG--GCGGACAAAAAGGAAC 358
|.||.|||.|.|||.|.|||||.||.|||||| ||||| ||||||| |.
BL00420___ytx 305 TATTTATCGGATATCTTGTGAACAAATTTATGGAGCGGA-AAAAAGG-AT 352
BSNT_04294___ 359 TGACCATTCTTGATCCAGCCTTGGGAACTGGGAACCTTCTGTTTACCGTG 408
||||..|..|||||||.||..|.||.|||||.|||||.|||.||.||||.
BL00420___ytx 353 TGACGCTGTTTGATCCGGCGGTCGGCACTGGAAACCTGCTGCTTGCCGTT 402
BSNT_04294___ 409 CTGAACCAGCTGTCTGAAAAAACGGCAAACAGC-TTTGGCATTGAAATTG 457
.|||||||||||.||||..||.|||.||| ||| ||.|||...||.||||
BL00420___ytx 403 TTGAACCAGCTGGCTGAGGAAGCGGGAAA-AGCGTTCGGCTCAGAGATTG 451
BSNT_04294___ 458 ATGATGTGCTCTTGAAAATCGCCTATGCCCAAGCGAACCTTCTGAAAAAA 507
||||.||.||..|.||..|.|||||||.|||.||.|||||.|.|.||||.
BL00420___ytx 452 ATGACGTCCTGATCAAGCTGGCCTATGTCCAGGCAAACCTGCAGGAAAAG 501
BSNT_04294___ 508 GAGCTTGAGCTTTTCCACCAGGACAGCCTTGAGCCGTTGTTTATTGATCC 557
||..|.||||||||..|||||||||||||..|||||.|.|||||.||.|.
BL00420___ytx 502 GAAATCGAGCTTTTTAACCAGGACAGCCTGCAGCCGATTTTTATGGAACA 551
BSNT_04294___ 558 AGTTGACACGGTCATTTGTGATCTGCCAGTCGGCTATTATCCGAATGACG 607
.|..||..|||||||.||.|||||.||.|||||.||||||||..||||||
BL00420___ytx 552 TGCCGATGCGGTCATCTGCGATCTTCCTGTCGGATATTATCCTGATGACG 601
BSNT_04294___ 608 AAGGAGCAGAAGCG----TTTGAGCTCAAAGCTGACGAAGGCCATTCCTT 653
||.|.|| ||| ||.||..|.||.||.||.||||||||.||.||
BL00420___ytx 602 AAAGTGC----GCGCGCTTTCGAATTAAAGGCAGATGAAGGCCACTCTTT 647
BSNT_04294___ 654 CGCTCATCATCTGTTTATTGAACAGAGCGTCAAGCATACCAAACCGGGCG 703
..|.||.|||.|||||||||||||.|||.|.|...||||.||||||||||
BL00420___ytx 648 TTCACACCATTTGTTTATTGAACAAAGCTTGACCTATACGAAACCGGGCG 697
BSNT_04294___ 704 GCTACTTATTTTTTATGATTCCGAATCATTTGTTTGAGAGCTCCCAAAGC 753
||||.||||||||||||||||||||.|||||||||||.|||...||||||
BL00420___ytx 698 GCTATTTATTTTTTATGATTCCGAACCATTTGTTTGAAAGCGGTCAAAGC 747
BSNT_04294___ 754 GGCAAGCTGAAACAGT---TTTTCAAAG-ATAAGGTTCATATCAACGCAC 799
|..|||||| .|| ||||.|||| |.||.|..|||||.||.|||.
BL00420___ytx 748 GAAAAGCTG----CGTACCTTTTTAAAGAACAATGCGCATATTAATGCAG 793
BSNT_04294___ 800 TGTTGCAGCTGCCAAAATCTATTTTTAAAGACGAAGCTCATGCCAAAAGC 849
||.|.|||||.||....||.|||||.|||||.|||||.||.||.||.|||
BL00420___ytx 794 TGCTTCAGCTTCCGCTGTCCATTTTCAAAGATGAAGCACACGCGAAGAGC 843
BSNT_04294___ 850 ATCCTTGTGCTTCAGAAACAAGGAGAGTATACGAAAGCGCCGGGGCAAA- 898
||..|.||..|.||.||.||.||.||..|..|||||||||| .|||
BL00420___ytx 844 ATTTTGGTTTTACAAAAGCATGGGGAACAGGCGAAAGCGCC----TAAAC 889
BSNT_04294___ 899 ---TTCTGCTTGCGAATCTTCCGTCTTTCTCCAATCAAAAGGCGATGCTT 945
|||||||.|||.|..|.|||||.|||.|||||||..|.||||||||.
BL00420___ytx 890 AGGTTCTGCTCGCGCAAGTCCCGTCATTCGCCAATCAGGATGCGATGCTG 939
BSNT_04294___ 946 GATATGATGGCTCAATTTGATGAATGGT-------TTAAAAAAGAAAAGT 988
.|.||||..||..||.|.||....|||| |.||||||||.||
BL00420___ytx 940 AACATGACAGCCAAACTCGACAGCTGGTTCCAGGCTGAAAAAAGATAA-- 987
BSNT_04294___ 989 AA 990
BL00420___ytx 987 -- 987
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