Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04273 and BL00410

See Amino acid alignment / Visit BSNT_04273 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:24
# Commandline: needle
#    -asequence dna-align/BSNT_04273___ytqI.1.5803.seq
#    -bsequence dna-align/BL00410___ytqI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04273___ytqI-BL00410___ytqI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04273___ytqI-BL00410___ytqI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04273___ytqI
# 2: BL00410___ytqI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 976
# Identity:     714/976 (73.2%)
# Similarity:   714/976 (73.2%)
# Gaps:          65/976 ( 6.7%)
# Score: 2569.0
# 
#
#=======================================

BSNT_04273___      1 ATGAAAACAGAATTGATCAGAACCATATCATTATATGACACGATTATCTT     50
                     |||||||.||||.|.|||||||||||||||||||||||||||||.||..|
BL00410___ytq      1 ATGAAAAAAGAAATCATCAGAACCATATCATTATATGACACGATCATTAT     50

BSNT_04273___     51 ACATAGACATGTGCGTCCTGATCCGGATGCCTACGGATCACAGTGCGGGC    100
                     |||||||||||||.|.||.|||||.||.|||||||||||.||.|||||.|
BL00410___ytq     51 ACATAGACATGTGAGACCGGATCCTGACGCCTACGGATCCCAATGCGGCC    100

BSNT_04273___    101 TTACGGAAATCCTGCGTGAAACATATCCTGAAAAAAATATTTTTGCGGTC    150
                     ||||||||||||||.|.|.|||.||.||.||||||||||||||.||||||
BL00410___ytq    101 TTACGGAAATCCTGAGGGCAACCTACCCCGAAAAAAATATTTTCGCGGTC    150

BSNT_04273___    151 GGCACGCCTGAACCGTCCCTCTCTTTCTTATATTCCCTTGATGAGGTGGA    200
                     ||..|.||||||||.||.|||.||||.||.|||.|.|..||||.|     
BL00410___ytq    151 GGAGCTCCTGAACCTTCTCTCGCTTTTTTGTATACTCCAGATGTG-----    195

BSNT_04273___    201 CAATGAA-AC-----ATATGAAGGCGCACTTGTCATTGTCTGCGATACGG    244
                      |.|||| ||     .||||||...|||||||||||.||.|||||.||||
BL00410___ytq    196 -ATTGAAGACCCGGTGTATGAAAATGCACTTGTCATCGTTTGCGACACGG    244

BSNT_04273___    245 CAAATCAGGAAAGAATCGACGATCAGCGTT--ATCCTTCAGGCGCCAAAC    292
                     |||||||.|..|||||....|||..|||.|  |.|||  .||||.|||.|
BL00410___ytq    245 CAAATCAAGCGAGAATTTCAGATTCGCGCTACAACCT--GGGCGACAAGC    292

BSNT_04273___    293 TAATGAAAATCGACCACCATCCGAACGAAGATCCATACGGTGACCTTCTC    342
                     |.||.||||||||||||||||||||.|||||.|..|||||.||||||.|.
BL00410___ytq    293 TGATCAAAATCGACCACCATCCGAATGAAGACCGGTACGGCGACCTTTTA    342

BSNT_04273___    343 TGGGTCGATACAAGCGCCAGCTCAGTAAGTGAAATGATTTACGAGCTGTA    392
                     |||||.|||||.||.||.|||||....||.||.|||||||||||.|||||
BL00410___ytq    343 TGGGTGGATACGAGTGCGAGCTCGACGAGCGAGATGATTTACGAACTGTA    392

BSNT_04273___    393 TTTAGAAGGAAAAGAGCA---CGGCTGGAAGCTGAATACGAAAGCG-GCA    438
                     |||||..||.|||||.||   .||.|||..|||....|| ||||.| ||.
BL00410___ytq    393 TTTAGCGGGTAAAGAACAAGCGGGATGGGCGCTTCCAAC-AAAGGGCGCC    441

BSNT_04273___    439 GAGCTGATCTACGCCGGCATTGTTGGAGATACCGGACGCTTTTTATTTCC    488
                     ||.||||||||.|||||||||||.||.|||||.||.|||||.||||||||
BL00410___ytq    442 GAACTGATCTATGCCGGCATTGTGGGGGATACAGGGCGCTTCTTATTTCC    491

BSNT_04273___    489 GAATACCACGGAAAAAACATTAAAATATGCAGGCGAGCTCATTCAGTATC    538
                     |||.||.||..||||.|||||.||||||||.||.|||||.||..||||||
BL00410___ytq    492 GAACACGACAAAAAAGACATTGAAATATGCCGGAGAGCTGATCGAGTATC    541

BSNT_04273___    539 CATTCTCTTCCTCA-GAGTTATTTAATCAATTGTATGAAACAAAACTGAA    587
                     |.||.|||||| || |.|.|.|||.|||||||.|||||.||.|||.|.||
BL00410___ytq    542 CTTTTTCTTCC-CAGGCGCTTTTTGATCAATTATATGAGACGAAATTAAA    590

BSNT_04273___    588 TGTGGTGAAGCTTAATGGCTTTATCTTTCAAAATGTGTCTTTGTCCGAAA    637
                     |||.||||.|||.|||||||.|||.|..||.|||||.|||.|||||||||
BL00410___ytq    591 TGTTGTGAGGCTGAATGGCTATATTTACCAGAATGTTTCTCTGTCCGAAA    640

BSNT_04273___    638 ACGGGGCGGCTTCTGTTTTCATCA-------------AAAAGGATACGCT    674
                     ||||.|..||.||.||||||||||             |.|...||||   
BL00410___ytq    641 ACGGTGTTGCGTCGGTTTTCATCACCCGCGATATTTTACATCAATAC---    687

BSNT_04273___    675 TGAAAAATTCGGCACAACGGCTTCTGAAGCGTCGCAGCTTGTCGGGACGC    724
                        ||.|||       |||.|.||||||||.||.|||||||||.|.||||
BL00410___ytq    688 ---AATATT-------ACGCCGTCTGAAGCTTCACAGCTTGTCAGCACGC    727

BSNT_04273___    725 TCGGCAATATCTCAGGTATTCGCGCCTGGGTGTTTTTCGTAGAAGAAGAC    774
                     ||||||||||.||.||.||....||.|||||||||||.||.||.||||.|
BL00410___ytq    728 TCGGCAATATTTCGGGGATCAAAGCATGGGTGTTTTTTGTGGAGGAAGCC    777

BSNT_04273___    775 GATCAAATCAGAGTCAGATTCCGTTCGAAGGGGCC---TGTCATTAACGG    821
                     |||||||||||.||.||..|.|||||.||||||||   ||||   ||.|.
BL00410___ytq    778 GATCAAATCAGGGTAAGGCTTCGTTCAAAGGGGCCGATTGTC---AATGA    824

BSNT_04273___    822 ACTTGCCCGGAAATATAACGGCGGAGGGCATCCGTTAGCTTCAGGCGCCT    871
                     |.|.||....|||||.||||||||.||.||||||.|.||..|.|||||.|
BL00410___ytq    825 AGTCGCTAAAAAATACAACGGCGGGGGCCATCCGCTCGCAGCCGGCGCTT    874

BSNT_04273___    872 CTATTTACAGCTGGGATGAAGCTGATCGGATTT----TAGCTGATCTGGA    917
                     |.||.||...||||.|.||.|||||||    ||    |.|||||.|||| 
BL00410___ytq    875 CCATCTATGACTGGAAAGACGCTGATC----TTGTCATCGCTGACCTGG-    919

BSNT_04273___    918 AACAT-TATGTAAAGAACACGAGTAG    942
                     |.|.| ||||.||||||.||.|.||.
BL00410___ytq    920 AGCGTATATGCAAAGAAAACAAATAA    945


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04273 and BL00410

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
