Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04267 and BL00405

See Amino acid alignment / Visit BSNT_04267 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_04267___accD.1.5803.seq
#    -bsequence dna-align/BL00405___accD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04267___accD-BL00405___accD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04267___accD-BL00405___accD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04267___accD
# 2: BL00405___accD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 880
# Identity:     689/880 (78.3%)
# Similarity:   689/880 (78.3%)
# Gaps:          11/880 ( 1.2%)
# Score: 2653.0
# 
#
#=======================================

BSNT_04267___      1 TTGTTAAAGGATATATTCACGAAAAAG---AAAAAGTATGCTTCCGTACC     47
                     ||||||||.||||||||||..||||||   |||||.||.||||||||.||
BL00405___acc      1 TTGTTAAAAGATATATTCAGCAAAAAGAAAAAAAAATACGCTTCCGTTCC     50

BSNT_04267___     48 ATCTGAACAAGCGAAGCACGATGTTCCGGAAGGCATTATGACAAAATGTC     97
                     ..|.|||..|||||||||.|||||.||||||||.||.||||||||.||.|
BL00405___acc     51 CGCGGAATCAGCGAAGCAAGATGTACCGGAAGGGATCATGACAAAGTGCC    100

BSNT_04267___     98 CTAAGTGTAAAAAAATCATGCTCACTAAAGAGTTGGATAAAAATATGCGG    147
                     |..|.||||||||||||||||||||.||||||.|||||||||||.|..||
BL00405___acc    101 CGGATTGTAAAAAAATCATGCTCACAAAAGAGCTGGATAAAAATTTAAGG    150

BSNT_04267___    148 GTATGCATGAACTGCGATTATCATTTCCCAATGAACGCAAAACAGCGTAT    197
                     ||.||||||||.||||.|||.|||.|.|.|||||||||.||.||||||||
BL00405___acc    151 GTCTGCATGAATTGCGGTTACCATCTTCAAATGAACGCGAAGCAGCGTAT    200

BSNT_04267___    198 CGAAAGCTTGATGGATGAAAAATCCTTTGAGGAATTTAATCAGGGAATGC    247
                     ..|||||.||.||||.||....||||||||.|||||.|||||||..|||.
BL00405___acc    201 AAAAAGCCTGCTGGACGATGGCTCCTTTGAAGAATTCAATCAGGATATGA    250

BSNT_04267___    248 TCTCGGAAAATCCGCTTGGTTTCCCGGGATATCTGGAAAAGCTTG-AAAA    296
                     |.||.|||||.|||||.|..|||||||||||.||.||||| .||| ||||
BL00405___acc    251 TGTCTGAAAACCCGCTGGAGTTCCCGGGATACCTTGAAAA-ATTGCAAAA    299

BSNT_04267___    297 AGATCGCGAGAAAACATCCTTAAACGAGGCTGTTGTGACAGGCAAGGGCA    346
                     |||.||.||.|||||.||..|.||.||.||.|||||.||.||.||.||.|
BL00405___acc    300 AGACCGGGAAAAAACGTCGCTGAATGAAGCGGTTGTTACCGGGAAAGGGA    349

BSNT_04267___    347 CCATCGGCGGACACCCGGCTGTTGTCGCCGTCATGGACTCTTCATTCAGA    396
                     |.||.|.||||...|||||.||.||.|||||.|||||.||.||.||||||
BL00405___acc    350 CGATTGACGGATCTCCGGCGGTCGTGGCCGTGATGGATTCATCTTTCAGA    399

BSNT_04267___    397 ATGGGCAGCATGGGTTCAGTCGTCGGTGAAAAAATCACGCTTGCGATTGA    446
                     |||||.||||||||.||.|||||.||.||||||||.||||||||.||.||
BL00405___acc    400 ATGGGAAGCATGGGATCTGTCGTTGGCGAAAAAATTACGCTTGCAATCGA    449

BSNT_04267___    447 AAAAGCAAAAGCTGATAAAGTTCCGTTTATTATTTTTACGGCTTCAGGCG    496
                     |||.||||.||..||.|||||.||.||.||.||||||||.||.|||||||
BL00405___acc    450 AAAGGCAAGAGAAGAAAAAGTACCTTTCATCATTTTTACCGCATCAGGCG    499

BSNT_04267___    497 GCGCTAGAATGCAGGAAGGCGTATTAAGTTTGATGCAGATGGCTAAGACA    546
                     |.||.|||||||||||||||.|..|.||.||||||||.||||||||.|||
BL00405___acc    500 GTGCAAGAATGCAGGAAGGCCTTCTCAGCTTGATGCAAATGGCTAAAACA    549

BSNT_04267___    547 AGCTCTGCGTTAAAACTGTTCAGTGAAGAACAGGGTCTT-ATTATTTCAG    595
                     |||||.||.||.||.||||||||.|||||.||||| ||| ||.|||||||
BL00405___acc    550 AGCTCCGCTTTGAAGCTGTTCAGCGAAGAGCAGGG-CTTGATCATTTCAG    598

BSNT_04267___    596 TAATGACGCATCCGACTACCGGGGGCGTATCAGCAAGCTTTGCATCCCTT    645
                     |.||||||||||||||.||.||.||||||||.||||||||.||||||||.
BL00405___acc    599 TGATGACGCATCCGACAACAGGCGGCGTATCCGCAAGCTTCGCATCCCTC    648

BSNT_04267___    646 GGCGATTACAATTTCGCTGAGCCTGGCGCGCTGATCGGTTTTGCCGGAAG    695
                     |||||||||||..|.||.||.||.|||||||||||.||.|||||||||||
BL00405___acc    649 GGCGATTACAACCTTGCCGAACCGGGCGCGCTGATAGGCTTTGCCGGAAG    698

BSNT_04267___    696 ACGGATTATTGAACAGACAATAGGAGAAAAACTGCCTGAGGACTTCCAAA    745
                     |.|.|||||.|||||.||.||..|.|||.|||||||.|||||.||.||.|
BL00405___acc    699 AAGAATTATCGAACAAACCATCCGTGAAGAACTGCCCGAGGATTTTCAGA    748

BSNT_04267___    746 CGGCTGAATTTTTATTAAAACATGGACAGCTTGATGCGGTTATTCATCGC    795
                     |.||.||||||.|.|||||.|||||.|||||||||.|.||..||||..|.
BL00405___acc    749 CTGCGGAATTTCTGTTAAAGCATGGCCAGCTTGATTCCGTCGTTCACAGA    798

BSNT_04267___    796 GACGATATGAAAAAAACGTTAG--AAAATCTGCTGGATATGCATCAAACA    843
                     |..||.||||||||||||.|.|  |..||.|  ||.|.|||||.|||||.
BL00405___acc    799 GCTGACATGAAAAAAACGCTCGGCAGCATTT--TGAAAATGCACCAAACT    846

BSNT_04267___    844 GGAGGTGACATTGAGTGGCTCCAAGATTAG    873
                     ||||||||..|.||||||||..|..|||||
BL00405___acc    847 GGAGGTGATCTCGAGTGGCTGGAGAATTAG    876


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04267 and BL00405

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
