Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04266 and BL00404

See Amino acid alignment / Visit BSNT_04266 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_04266___accA.1.5803.seq
#    -bsequence dna-align/BL00404___accA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04266___accA-BL00404___accA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04266___accA-BL00404___accA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04266___accA
# 2: BL00404___accA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity:     760/994 (76.5%)
# Similarity:   760/994 (76.5%)
# Gaps:          32/994 ( 3.2%)
# Score: 2824.0
# 
#
#=======================================

BSNT_04266___      1 GTGGCTCCAAGATTAGAATTTGAAAAACCGGTGATTGAACTGC---AAAC     47
                     ||||||..|..||||||||||||||||||||||.|.|||||||   ||  
BL00404___acc      1 GTGGCTGGAGAATTAGAATTTGAAAAACCGGTGGTCGAACTGCGTGAA--     48

BSNT_04266___     48 CAAAATCGCCGAACTAAAAAAATTCACCCAAGATTCCGATATGGATCTAA     97
                      ||.|||.|||||.|.|||||.|||||.||.|||||||||||||||.|.|
BL00404___acc     49 -AAGATCTCCGAATTGAAAAAGTTCACACAGGATTCCGATATGGATTTGA     97

BSNT_04266___     98 GTGCGGAAAT--CGAACGGCTCGAAGACCGTCTCGCTAAGCTTCAGGATG    145
                     |..|.|||||  ||||  |||.||||..|||||.|..|.||||.|.||.|
BL00404___acc     98 GCTCTGAAATTACGAA--GCTTGAAGCTCGTCTTGAAAGGCTTGAAGAAG    145

BSNT_04266___    146 ATATTTACAAAAATCTG-AAGCCATGGGACCGGGTTCAAATCGCGCGTCT    194
                     |.|||||.|.||||||| ||||| ||||||.|.||.||.||.||..|.|.
BL00404___acc    146 ACATTTATACAAATCTGAAAGCC-TGGGACAGAGTCCAGATTGCAAGGCA    194

BSNT_04266___    195 GGCGGACCGTCCGACAACTCTTGATTATATCGAACACCTGTTTACCGACT    244
                     ..||.|||||||||||||.||.||||||||||||||.||.||||||||.|
BL00404___acc    195 CCCGAACCGTCCGACAACGCTCGATTATATCGAACATCTCTTTACCGATT    244

BSNT_04266___    245 TTTTTGAATGTCACGGAGACAGAGCG----TACGGGGACGATGAAGCCAT    290
                     ||||||||||.|||||    |||.||    |.|||.||.||||||||.||
BL00404___acc    245 TTTTTGAATGCCACGG----AGATCGTTATTTCGGTGATGATGAAGCAAT    290

BSNT_04266___    291 TGTCGGCGGGATTGCGAAGTTCCACGGCCTCCCTGTAACGGTAATCGGGC    340
                     |||||||||.|||||.|||||||..||.||.|||||.||.||||||||.|
BL00404___acc    291 TGTCGGCGGAATTGCCAAGTTCCGGGGTCTTCCTGTGACAGTAATCGGTC    340

BSNT_04266___    341 ATCAGCGCGGCAAAGACACGAAGGAAAACCTAGTCCGCAATTTTGGGATG    390
                     |.|||||||||||.||.||.||.||||||.|...|||||||||.||.|||
BL00404___acc    341 AGCAGCGCGGCAAGGATACAAAAGAAAACATCCGCCGCAATTTCGGAATG    390

BSNT_04266___    391 CCGCATCCAGAAGGCTACAGAAAAGCGCTTCGTCTGATGAAACAGGCTGA    440
                     ||||||||.|||||||||.|.||||||||..|.||||||||.|||||.||
BL00404___acc    391 CCGCATCCTGAAGGCTACCGCAAAGCGCTCAGGCTGATGAAGCAGGCCGA    440

BSNT_04266___    441 CAAATTTAACAGACCAATTATCTGTTTTATTGATACGAAGGGGGCATACC    490
                     ||||||||||||.||.||.|||||.|||||||||||.||.||.|||||||
BL00404___acc    441 CAAATTTAACAGGCCGATCATCTGCTTTATTGATACAAAAGGAGCATACC    490

BSNT_04266___    491 CCGGACGAGCAGCTGAAGAAAGAGGACAAAGTGAAGCTATTGCCAAAAAC    540
                     |.||...||||||||||||..|.||.|||||.|||||.||||||||.||.
BL00404___acc    491 CGGGCAAAGCAGCTGAAGAGCGGGGGCAAAGCGAAGCGATTGCCAAGAAT    540

BSNT_04266___    541 CTGTTTGAGATGGCCGGCCT-TCGAGTGCCTGTTATCTGCATCGTCATCG    589
                     ||.|||||.|||||.||.|| || .|||||.||.||||..||||||||||
BL00404___acc    541 CTTTTTGAAATGGCGGGACTCTC-CGTGCCGGTCATCTCGATCGTCATCG    589

BSNT_04266___    590 GTGAAGGCGGAAGCGGCGGAGCCCTTGGTCTGGGTGTAGGTAATCACTTG    639
                     |.||||||||.|||||.|||||.||||..||.||.||.|..||.|.||| 
BL00404___acc    590 GGGAAGGCGGCAGCGGGGGAGCGCTTGCGCTCGGCGTCGCAAACCGCTT-    638

BSNT_04266___    640 CAT--ATGCTGGAAAACTCTACTTATTCTGTTATTTCTCCGGAAGGTGCC    687
                      ||  ||||||||||||||.||||||||.||.||.|||||.||.||.||.
BL00404___acc    639 -ATTGATGCTGGAAAACTCAACTTATTCGGTGATCTCTCCCGAGGGAGCT    687

BSNT_04266___    688 GCGGCACTTTTATGGAAGGACTCCAGTCTTGCTAAAAAAGCAGCAGAAAC    737
                     ||.||..|..|.||||||||.||..|.||.||.||||||||.||||||||
BL00404___acc    688 GCTGCTATCCTCTGGAAGGATTCAGGACTCGCGAAAAAAGCGGCAGAAAC    737

BSNT_04266___    738 AATGAAAATCACTGCGCCGGATTTAAAAGAATTAGGTATTATAGATCATA    787
                     ||||||||||||.||.|||||..|.||||||||.|.|||||||||||||.
BL00404___acc    738 AATGAAAATCACCGCTCCGGACCTTAAAGAATTGGATATTATAGATCATG    787

BSNT_04266___    788 TGATTAAAGAAGTAAAAGGCGGAGCGCACCATGATGTGAAGCTGCAGGCA    837
                     |.||.||||||||||.|||||||||.||||..||||||.|||.||||||.
BL00404___acc    788 TTATAAAAGAAGTAAGAGGCGGAGCACACCGCGATGTGGAGCAGCAGGCT    837

BSNT_04266___    838 AGCTATATGGACGAAACCCTTAAA--CAATCGTTAAAAACTTTGCTGAAG    885
                     ..|||.||.||||||.|.||.|||  |.|  |.|.|||.|..|||||||.
BL00404___acc    838 GCCTACATCGACGAAGCGCTGAAAGGCGA--GCTTAAATCCCTGCTGAAA    885

BSNT_04266___    886 CTGAGCGAAGAA-GAATTAGTTCAGCAGCGCTATGAAAAATATAAAGCAA    934
                     ||| |..||||| ||..|..|.||.||..|.|||.|.||.|||||..|||
BL00404___acc    886 CTG-GATAAGAACGAGCTGATCCAACAAAGATATAACAAGTATAAGTCAA    934

BSNT_04266___    935 TTGGCAAAGTCTCGGTTGAAGATCAATATATCGGGGTAAACTAA    978
                     ||||.|||.|.|||..||||.|.||||||.|.|||.||||.|||
BL00404___acc    935 TTGGAAAAATTTCGACTGAAAACCAATATGTTGGGATAAAATAA    978


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04266 and BL00404

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
