Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04252 and BL00397
See
Amino acid alignment /
Visit
BSNT_04252 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_04252___mdh.1.5803.seq
# -bsequence dna-align/BL00397___mdh.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04252___mdh-BL00397___mdh.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04252___mdh-BL00397___mdh.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04252___mdh
# 2: BL00397___mdh
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 939
# Identity: 755/939 (80.4%)
# Similarity: 755/939 (80.4%)
# Gaps: 0/939 ( 0.0%)
# Score: 3039.0
#
#
#=======================================
BSNT_04252___ 1 ATGGGAAATACTCGTAAAAAAGTTTCTGTTATCGGAGCAGGTTTTACCGG 50
||||||||.|..||.||.|||||.|||||.||||||||.||||||||.||
BL00397___mdh 1 ATGGGAAAGAAGCGAAATAAAGTATCTGTCATCGGAGCGGGTTTTACAGG 50
BSNT_04252___ 51 AGCTACAACTGCATTTTTAATCGCTCAAAAAGAGCTGGCAGACGTTGTTC 100
.||.||||||||.|||||||..|||||||||||..||||.||.||.||.|
BL00397___mdh 51 TGCAACAACTGCGTTTTTAACGGCTCAAAAAGAATTGGCTGATGTCGTGC 100
BSNT_04252___ 101 TTGTTGACATTCCGCAATTGGAGAACCCGACAAAGGGAAAAGCGCTTGAT 150
|.||.|||||||||||..|.||.|||||.|||||.||.||||||||.|||
BL00397___mdh 101 TAGTCGACATTCCGCAGCTTGAAAACCCTACAAAAGGGAAAGCGCTCGAT 150
BSNT_04252___ 151 ATGCTTGAAGCAAGCCCGGTTCAAGGCTTTGACGCAAAAATTACGGGAAC 200
|||||.|||||.|||||.||.|||||.||||||||.||.|||||.|||||
BL00397___mdh 151 ATGCTGGAAGCGAGCCCTGTCCAAGGATTTGACGCGAATATTACAGGAAC 200
BSNT_04252___ 201 ATCCAATTACGAGGATACAGCTGGCTCTGACATTGTTGTCATTACAGCCG 250
..|.||.||.||.|||||.|||||.||.||.||.||.|||||.||.||.|
BL00397___mdh 201 GGCAAACTATGAAGATACGGCTGGTTCAGATATCGTCGTCATCACGGCGG 250
BSNT_04252___ 251 GTATCGCAAGAAAACCTGGTATGAGCAGAGATGATCTGGTCTCTTCAAAC 300
|.|||||||||||.||.||.||||||.|.||.||.||.||..||.||||.
BL00397___mdh 251 GGATCGCAAGAAAGCCGGGAATGAGCCGGGACGACCTCGTGGCTACAAAT 300
BSNT_04252___ 301 GAAAAGATTATGAGAAGCGTTACCCGGGAAATCGTGAAATATTCTCCTGA 350
||||||||.|||||.|||||.||...||||.|.||.|||||.||.|||||
BL00397___mdh 301 GAAAAGATCATGAGGAGCGTAACGAAGGAAGTTGTTAAATACTCACCTGA 350
BSNT_04252___ 351 CTCTATTATTGTGGTGCTGACAAATCCTGTTGATGCAATGACATACGCGG 400
.|.|||.||..|.||.||||||||.|||||.|||||.|||||||||||.|
BL00397___mdh 351 TTGTATCATCATCGTTCTGACAAACCCTGTAGATGCGATGACATACGCCG 400
BSNT_04252___ 401 TGTACAAAGAATCAGGCTTCCCTAAAGAGCGTGTAATCGGCCAGTCCGGT 450
|.||.||||||||.||||||||.||||||||.||.|||||||||||.||.
BL00397___mdh 401 TCTATAAAGAATCGGGCTTCCCGAAAGAGCGGGTCATCGGCCAGTCGGGA 450
BSNT_04252___ 451 GTGCTTGATACGGCAAGATTCAGAACATTTGTGGCAGAGGAATTAAACCT 500
.|..|.||||||||||||||||||||.|||||.||..||||..|.|||||
BL00397___mdh 451 ATTTTGGATACGGCAAGATTCAGAACGTTTGTCGCTCAGGAGCTCAACCT 500
BSNT_04252___ 501 GTCAGTGAAAGATGTGACTGGTTTCGTACTCGGCGGACACGGTGACGATA 550
.||.||.|||||..|.||.|||||.|||||.|||||||||||.|||||||
BL00397___mdh 501 TTCCGTCAAAGACATTACAGGTTTTGTACTGGGCGGACACGGGGACGATA 550
BSNT_04252___ 551 TGGTGCCGCTTGTGCGTTATTCTTATGCTGGCGGTATCCCGCTTGAAACT 600
||||.|||||.||.||.||.||||||||.|||||.||.|||||||||||.
BL00397___mdh 551 TGGTTCCGCTCGTTCGCTACTCTTATGCAGGCGGCATTCCGCTTGAAACG 600
BSNT_04252___ 601 CTTATTCCGAAAGAACGGATTGACGCAATTGTGGAGCGCACTAGAAAAGG 650
|||.||||||||||.|||||.||.||.|||||.||..|.||.||||||||
BL00397___mdh 601 CTTCTTCCGAAAGACCGGATCGATGCGATTGTTGAAAGAACGAGAAAAGG 650
BSNT_04252___ 651 CGGAGGCGAAATCGTGAATCTTCTTGGAAACGGAAGCGCGTATTATGCGC 700
|||.||.|||||.||.||.||..|.|||||||||||||||||.|||||||
BL00397___mdh 651 CGGGGGAGAAATTGTCAACCTGTTAGGAAACGGAAGCGCGTACTATGCGC 700
BSNT_04252___ 701 CTGCGGCTTCTCTGACAGAAATGGTCGAAGCGATCTTGAAAGATCAGCGC 750
||||.|||||.||||||||||||||.|||||.|||||.|||||.||||||
BL00397___mdh 701 CTGCCGCTTCCCTGACAGAAATGGTTGAAGCAATCTTAAAAGACCAGCGC 750
BSNT_04252___ 751 CGCGTCCTTCCTACAATTGCTTATCTTGAAGGGGAATACGGCTATGAAGG 800
|||||.||.||.||.|||||.||.||||||||.|||||||||||||||||
BL00397___mdh 751 CGCGTGCTGCCGACCATTGCCTACCTTGAAGGCGAATACGGCTATGAAGG 800
BSNT_04252___ 801 CATCTACCTTGGTGTTCCTACAATTATAGGCGGCAACGGTCTTGAGCAAA 850
|||.||.||.||.|||||.||.|||||.|||||.|||||||||||.||.|
BL00397___mdh 801 CATTTATCTCGGCGTTCCGACGATTATCGGCGGAAACGGTCTTGAACAGA 850
BSNT_04252___ 851 TCATTGAACTTGAACTGACAGACTATGAAAGAGCGCAGCTGAATAAATCA 900
|||||||||||||||||||.||....||||.|...|||||..|||||||.
BL00397___mdh 851 TCATTGAACTTGAACTGACTGAAACCGAAAAAAGTCAGCTCGATAAATCC 900
BSNT_04252___ 901 GTAGAATCTGTCAAAAATGTCATGAAAGTATTATCCTAA 939
||.|||||.||||||||.|||||||||||||||||.|||
BL00397___mdh 901 GTTGAATCAGTCAAAAACGTCATGAAAGTATTATCATAA 939
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.