Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04246 and BL00393

See Amino acid alignment / Visit BSNT_04246 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:21
# Commandline: needle
#    -asequence dna-align/BSNT_04246___mutM.1.5803.seq
#    -bsequence dna-align/BL00393___mutM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04246___mutM-BL00393___mutM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04246___mutM-BL00393___mutM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04246___mutM
# 2: BL00393___mutM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 870
# Identity:     619/870 (71.1%)
# Similarity:   619/870 (71.1%)
# Gaps:          75/870 ( 8.6%)
# Score: 2158.0
# 
#
#=======================================

BSNT_04246___      1 ATGGATGTGCCGGAATTACCAGAGGTTGAGACGGTCCGGCGCACTCTGAC     50
                           |||||||||||||||||.||.||.|||||||||||||||||..|
BL00393___mut      1 ------GTGCCGGAATTACCAGAAGTCGAAACGGTCCGGCGCACTCTTGC     44

BSNT_04246___     51 CGGGCTTGTAA-AGGGAAAAACAATCAAATCGGTAGAGATCAGATGGCCG     99
                     ||||||||||| |||| |||||.|||.|..||||.||..||||||||.|.
BL00393___mut     45 CGGGCTTGTAAGAGGG-AAAACGATCGATGCGGTTGATGTCAGATGGACA     93

BSNT_04246___    100 AATATCATCAAACGGCCTGCCGAACCGGAGGAATTTGCGCGAAAA-----    144
                     ||.|||||.|||||.||.|..||.||.||||||||.||     ||     
BL00393___mut     94 AAAATCATAAAACGTCCGGAGGAGCCTGAGGAATTCGC-----AAGGCTC    138

BSNT_04246___    145 CTAGCAGGAGAAACGATACAGTCCATCGGAAGACGGGGAAAGTTTTTACT    194
                     ||.||.||..|.|||||.|||||.|||||||||.|||||||.||..|..|
BL00393___mut    139 CTGGCCGGCCAGACGATTCAGTCGATCGGAAGAAGGGGAAAATTCCTGTT    188

BSNT_04246___    195 GTTTCATTTAGATCATTATGTTATGGTTTCTCACCTTCGAATGGAAGGAA    244
                     |||||||.|.|||.|||.|||.||||||||.||..|..||||||||||||
BL00393___mut    189 GTTTCATCTTGATGATTGTGTCATGGTTTCCCATTTGAGAATGGAAGGAA    238

BSNT_04246___    245 AATACGGTCTTCATCAAGCCGAGGAGCCTGACGATAAACACGTGCATGTC    294
                     |.|||||.|||||||||..|||.||.||....||||||||.|||||.|||
BL00393___mut    239 AGTACGGGCTTCATCAAAACGATGAACCCCTTGATAAACATGTGCACGTC    288

BSNT_04246___    295 ATATTCACGATGACGGATGGAACCCAGCTCCGGTACAGGGATGTGCGGAA    344
                     ||.||||.|.|.|||||.||||.|.||||.||.|||.||||||| |.|||
BL00393___mut    289 ATTTTCAGGTTCACGGACGGAAGCGAGCTGCGCTACCGGGATGT-CAGAA    337

BSNT_04246___    345 A-TTTGGAACCATGCACTTATTTAAACCGGGAGAAGAAGCGGGC-GAGCT    392
                     | ||.||.||||||||.||.|||||.||||||||.||| |.|.| |||||
BL00393___mut    338 AGTTCGGCACCATGCATTTGTTTAAGCCGGGAGAGGAA-CTGACAGAGCT    386

BSNT_04246___    393 CCCGCTTTCT----CAGTTAGGTCCGGAGCCGGATGCAGAA--GAATTTA    436
                     .||    |||    |||.|.||.||.|||||  .|.|||.|  |||||||
BL00393___mut    387 GCC----TCTCAGGCAGCTCGGCCCCGAGCC--CTTCAGCAGCGAATTTA    430

BSNT_04246___    437 CAAGTGCGTATTTAAAAGAACGGCTTGCGAAAACAAACCGCGCTGTCAAA    486
                     ||...|..||.||||.|||.||.||...|||||||||||||.|.||.|||
BL00393___mut    431 CAGCCGATTACTTAAGAGAGCGCCTGAAGAAAACAAACCGCTCGGTGAAA    480

BSNT_04246___    487 ACTGCCCTACTGGATCAAAAAACGGTAGTTGGACTCGGGAACATTTATGT    536
                     ||.||.||.||.|||||....||.||.||.|||||.||.||.||||||||
BL00393___mut    481 ACCGCGCTGCTCGATCAGCGGACAGTCGTCGGACTGGGCAATATTTATGT    530

BSNT_04246___    537 GGATGAGGCTCTTTTCAGAGCAGGTGTCCATCCCGAGACAAAAGCAAA--    584
                     .||.||||||.|.||||||||.|||.|||||||||||.|||.|||.||  
BL00393___mut    531 CGACGAGGCTTTGTTCAGAGCCGGTATCCATCCCGAGGCAACAGCGAACA    580

BSNT_04246___    585 ---TCAATTATCAGATAAAACAATCAAAAC---CCTTCACGCTGGAATCA    628
                        |||     || |.|||||     |.||   .||||.|        ||
BL00393___mut    581 AGCTCA-----CA-AAAAAAC-----AGACGGTTCTTCTC--------CA    611

BSNT_04246___    629 AAAA-----CACTC------TGCAGGAGGCGATTGATGCGGGCGGAAGCA    667
                     .|||     ||.||      |..||||.||..||||.||.||.|||||||
BL00393___mut    612 TAAAGAGATCATTCAAACGTTAAAGGAAGCTGTTGAAGCAGGGGGAAGCA    661

BSNT_04246___    668 CAGTCCGTTCATATATCAACTCCCAAGGGGAAATCGGAATGTTCCAGCTG    717
                     |||||.|.||.||.|||||.||.|||||.||.|||||.|||||||||||.
BL00393___mut    662 CAGTCAGATCTTACATCAATTCACAAGGTGAGATCGGCATGTTCCAGCTC    711

BSNT_04246___    718 CAGCATTTTGTGTACGGAAAAAAAGACGAGCCATGCAAAAATTGCGGAAC    767
                     .|.|.|||.||.|||||.|..|||||.||.||.||.|||||.||||||.|
BL00393___mut    712 AAACTTTTCGTTTACGGCAGGAAAGATGAACCTTGTAAAAAATGCGGATC    761

BSNT_04246___    768 GATGATTTCGAAAATTGTCGTTGGAGGAAGAGGCACGCATTTTTGCGCAA    817
                     ....|||...||||..||||||||.|||||.|||||||||||||||..||
BL00393___mut    762 TCCAATTGAAAAAACAGTCGTTGGCGGAAGGGGCACGCATTTTTGCATAA    811

BSNT_04246___    818 AGTGCCAGACAAAAAAGTAG    837
                     ||||||||| |||||.|.  
BL00393___mut    812 AGTGCCAGA-AAAAATGA--    828


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04246 and BL00393

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
