Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04237 and BL00389
See
Amino acid alignment /
Visit
BSNT_04237 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:20
# Commandline: needle
# -asequence dna-align/BSNT_04237___speD.1.5803.seq
# -bsequence dna-align/BL00389___speD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04237___speD-BL00389___speD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04237___speD-BL00389___speD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04237___speD
# 2: BL00389___speD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 387
# Identity: 329/387 (85.0%)
# Similarity: 329/387 (85.0%)
# Gaps: 6/387 ( 1.6%)
# Score: 1424.5
#
#
#=======================================
BSNT_04237___ 1 ATGGAAACAATGGGGCGTCACGTTATCTCCGAGCTATGGGGATGCGATTT 50
||||||||||||||||||||||||||||||||.||.||||||||||||||
BL00389___spe 1 ATGGAAACAATGGGGCGTCACGTTATCTCCGAACTGTGGGGATGCGATTT 50
BSNT_04237___ 51 TGATAAGCTGAATGACATGGATTTTATTGAAAAAACGTTTGTAAATGCTG 100
||||||||||||||||||||||||||||||||||||||||||||||||.|
BL00389___spe 51 TGATAAGCTGAATGACATGGATTTTATTGAAAAAACGTTTGTAAATGCGG 100
BSNT_04237___ 101 CTCTAAAATCAGGTGCTGAGGTGCGCGAGGTTGCATTTCACAAATTTGCA 150
|.||.||.||||||||||||||.||.|||||.||.|||||.||.|||||.
BL00389___spe 101 CACTGAAGTCAGGTGCTGAGGTACGTGAGGTAGCCTTTCATAAGTTTGCG 150
BSNT_04237___ 151 CCGCAAGGCGTAAGCGGAGTTGTGATTATTTCTGAATCACACTTAACGAT 200
||.|||||.||||||||.||.|||||||||||.|||||.|||||.||.||
BL00389___spe 151 CCTCAAGGTGTAAGCGGGGTCGTGATTATTTCAGAATCTCACTTGACCAT 200
BSNT_04237___ 201 TCACAGTTTTCCTGAGCACGGATATGCGAGCATTGATGTTTATACTTGTG 250
|||||||||||||||.|||||||||||.||||||||||||||||||||.|
BL00389___spe 201 TCACAGTTTTCCTGAACACGGATATGCCAGCATTGATGTTTATACTTGCG 250
BSNT_04237___ 251 GAGACTTAGATCCTAATGTCGCTGCTGATTACATTGCAGAGGCATTACAT 300
||||.||||||||.||.||.|||||.|||||.||.|||||.|..|||...
BL00389___spe 251 GAGATTTAGATCCGAACGTAGCTGCCGATTATATCGCAGAAGAGTTAAGA 300
BSNT_04237___ 301 GCTGATACAAGAGAAAACATTGAAATACCAAGAGGAATGGGGCCTGTGCA 350
||.||.||||||||.||||||||||||||.|||||.|||||.|||||.||
BL00389___spe 301 GCGGAAACAAGAGAGAACATTGAAATACCGAGAGGCATGGGACCTGTTCA 350
BSNT_04237___ 351 AATTAAACAGGCGCAAGCGAAA------GTACTATAA 381
..|.||||||||..||||.||| |.|||.|||
BL00389___spe 351 GGTGAAACAGGCCAAAGCCAAAGCACAGGCACTTTAA 387
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.