Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04231 and BL00385

See Amino acid alignment / Visit BSNT_04231 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:19
# Commandline: needle
#    -asequence dna-align/BSNT_04231___dnaI.1.5803.seq
#    -bsequence dna-align/BL00385___dnaI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04231___dnaI-BL00385___dnaI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04231___dnaI-BL00385___dnaI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04231___dnaI
# 2: BL00385___dnaI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 996
# Identity:     684/996 (68.7%)
# Similarity:   684/996 (68.7%)
# Gaps:         123/996 (12.3%)
# Score: 2260.5
# 
#
#=======================================

BSNT_04231___      1 ATGGAACC----AATCGGCCGTTCTCTGCAGGGCGTAAC--CGGCAGGCC     44
                     |||||.||    ||.||  ||  ||.||||.|||||.||  ||  ||.||
BL00385___dna      1 ATGGAGCCGATTAAACG--CG--CTTTGCAAGGCGTGACGACG--AGACC     44

BSNT_04231___     45 GGATTTCCAAAAACGTCTTGAACAAATGAAGGAAAAAG-----TCATGAA     89
                     .|||||..|||||||.||||||.|.|||||.|||||||     || ||| 
BL00385___dna     45 CGATTTTAAAAAACGCCTTGAAGATATGAAAGAAAAAGTGCTCTC-TGA-     92

BSNT_04231___     90 AGATCAA-GATGTTCAAGCATTTTTGAAGGAAAACGA----------AGA    128
                         ||| ||||||||.||.|||||      |||| |          |||
BL00385___dna     93 ----CAAGGATGTTCAGGCGTTTTT------AAAC-AGCCGCCAGTCAGA    131

BSNT_04231___    129 AGTGATTGACCAAAAAATGATCGAAAAGAGCTTAAATAAGCTTTATGAAT    178
                     ||||   ||.|||..|||||||||.|.||||.|.||.|||||||||||||
BL00385___dna    132 AGTG---GATCAAGGAATGATCGACAGGAGCCTTAACAAGCTTTATGAAT    178

BSNT_04231___    179 ATATCGAACAAAGC-AAGAATTGCTCCTATTGTTCGGAAGA---------    218
                     |||...|.|||||| |||.||..|             ||||         
BL00385___dna    179 ATACACAGCAAAGCAAAGCATGCC-------------AAGACTGCCCGGG    215

BSNT_04231___    219 --TGAAA-ACTGCAACAATTTGTTGGAGGGCTACCATCCGAAGCTTGTTG    265
                       ||||| |.|||||.||..||.|..||||.||.|||||.||||||||..
BL00385___dna    216 TCTGAAAGAATGCAAAAACCTGATACAGGGTTATCATCCAAAGCTTGTGC    265

BSNT_04231___    266 TCAATGGGAGGTCTATTGATATCGAGT--ATTACGA---ATGTCCAG-TC    309
                     |.||.||.|...|.||.|||     ||  |.|||||   .|||||.| ..
BL00385___dna    266 TGAACGGAAAAACAATCGAT-----GTTCAATACGATAGGTGTCCGGAAA    310

BSNT_04231___    310 AAACGGAAGCTCGACCAGCAGAAGAAACAAAAGTCTCTTATGAAAAGCAT    359
                     |||.|.|||| .|||.||..|.|.|.|||.|.|||.||.||.||||||||
BL00385___dna    311 AAAAGAAAGC-GGACGAGAGGGAAAGACAGAGGTCGCTGATTAAAAGCAT    359

BSNT_04231___    360 GTATATCCAGCAGGATCTTCTCGGA--GCGACGTT--CCAGCAAGTTGAT    405
                     .|||||.||.|||||||||||  ||  ||.|||||  ||        |||
BL00385___dna    360 CTATATTCAACAGGATCTTCT--GAATGCTACGTTTGCC--------GAT    399

BSNT_04231___    406 AT-----CAG-TGACCCGAGCAGGCTCGCGAT-----GT--TTCAGCATG    442
                     ||     .|| |||||||||||       |||     ||  ||||||.||
BL00385___dna    400 ATTGACGGAGATGACCCGAGCA-------GATTGAAGGTCCTTCAGCTTG    442

BSNT_04231___    443 TTACAGACTTCCTGAAAAGCTATAATGAGACGGGAAAAGGGAAAGG-ATT    491
                     |.||.|..|||.||.|...||||||.||.||||||||.||.||||| |||
BL00385___dna    443 TGACGGGATTCTTGCATGACTATAACGAAACGGGAAAGGGAAAAGGCATT    492

BSNT_04231___    492 ATATTTATACGGGAAATTCGGGGTAGGAAAAACGTTTATGCTCGCTGCGA    541
                      ||..|.||||||||.||||||||.|||||.||.||||||||.||.||.|
BL00385___dna    493 -TACGTCTACGGGAAGTTCGGGGTCGGAAAGACCTTTATGCTGGCCGCCA    541

BSNT_04231___    542 TTGCCAATGAGCTGGCGGAAAAAGAGTATTCCTCCATGATTGTCTATGTG    591
                     ||||.||||||||.||.|.|||.||..||.|.|||||..|.||||||||.
BL00385___dna    542 TTGCAAATGAGCTTGCCGCAAAGGATCATCCGTCCATTCTCGTCTATGTC    591

BSNT_04231___    592 CCTGAATTTGTGAGAGAGCTTAAGAATTCGCTGCAAGACCAGACATTGGA    641
                     |||||||||||.||.|||||.||.|||.||.|.||.||.|||.|..|.||
BL00385___dna    592 CCTGAATTTGTCAGGGAGCTGAAAAATGCGATACATGATCAGTCGCTTGA    641

BSNT_04231___    642 AGAGAAGCTCAATATGGTAAAGACCACACCCGTATTGATGCTTGATGACA    691
                     .||.|||||..|||||||.|||.|.||.||..|..|||||||.|||||||
BL00385___dna    642 GGAAAAGCTTGATATGGTCAAGTCTACGCCGATTCTGATGCTCGATGACA    691

BSNT_04231___    692 TCGGAGCAGAATCAATGACAAGCTGGGTAAGGGATGAAGTCATCGGAACG    741
                     ||||.||.||.||.|||.||||||||||.||||||||.||..||||..|.
BL00385___dna    692 TCGGTGCGGAGTCCATGTCAAGCTGGGTGAGGGATGAGGTGCTCGGCGCC    741

BSNT_04231___    742 GTGCTTCAACACAGAATGTCCCAGCAGCTGCCTACTTTCTTTTCTTCTAA    791
                     .|.|||||.|||||||||||||||||||||||.||.||.||.|||||.||
BL00385___dna    742 ATCCTTCAGCACAGAATGTCCCAGCAGCTGCCGACGTTTTTCTCTTCAAA    791

BSNT_04231___    792 TTTCTCA-CCTGACGAGCTGAAGCATCATTTTACGTATTCGCAGAGGGGA    840
                     .|| |.| |||||.||.|||||.||.|||||.||.||||||||.||||||
BL00385___dna    792 CTT-TGATCCTGATGAACTGAAACACCATTTCACCTATTCGCAAAGGGGA    840

BSNT_04231___    841 GAAAAAGAAGAAGTAAAAGCTGCAAGATTAATGGAGCGGATATTATATTT    890
                     ||||||||||||||||||||.|||||..|.|||||..||.|..|.|||||
BL00385___dna    841 GAAAAAGAAGAAGTAAAAGCGGCAAGGCTGATGGAAAGGGTGCTGTATTT    890

BSNT_04231___    891 GGCTGCTCCGATCCGCCTTGACGGAGAAAACCGCCGCCATCCATAA    936
                     .||..|.||..||||.||.|||||..|||||||.||   ||..|||
BL00385___dna    891 AGCGACGCCTGTCCGGCTGGACGGGAAAAACCGGCG---TCAGTAA    933


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