Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04227 and BL00383

See Amino acid alignment / Visit BSNT_04227 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:19
# Commandline: needle
#    -asequence dna-align/BSNT_04227___ytxC.1.5803.seq
#    -bsequence dna-align/BL00383___ytxC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04227___ytxC-BL00383___ytxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04227___ytxC-BL00383___ytxC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04227___ytxC
# 2: BL00383___ytxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 897
# Identity:     593/897 (66.1%)
# Similarity:   593/897 (66.1%)
# Gaps:         105/897 (11.7%)
# Score: 1797.5
# 
#
#=======================================

BSNT_04227___      1 ATGCTTGAAATAATCTTTGAAGATGACCATGATGCAGCCGCTTTTTTACA     50
                     |||||||||||.|..|||||||||||..|||||.|||||||.|||||.||
BL00383___ytx      1 ATGCTTGAAATTACATTTGAAGATGATTATGATACAGCCGCGTTTTTGCA     50

BSNT_04227___     51 TCTCATTCAGC-ATTCGGACG---ATCGGAACAATATCATTGTCCATGAA     96
                     ||||.||| || ||.||||.|   |||||   .||||||...|.||.|||
BL00383___ytx     51 TCTCCTTC-GCAATGCGGATGCGAATCGG---CATATCAGGATTCACGAA     96

BSNT_04227___     97 G-GCATACGAAAAATCGGGATTGAAAA-AGCGAATCCGGCTTTTCCTATT    144
                     | || .|.|.||.|||||.|||||||| |.|.|.||| .||.|...||||
BL00383___ytx     97 GCGC-CAGGGAAGATCGGAATTGAAAAGACCCATTCC-TCTGTCAGTATT    144

BSNT_04227___    145 CAGCGTTTTATGGAGCCGATTCTGGTCAAATTTTTTTTGGAATGCAAAGA    194
                     |||...|.|||.||||||.|||||...|.|||||||...|||||||||||
BL00383___ytx    145 CAGGCCTATATTGAGCCGGTTCTGACGAGATTTTTTACAGAATGCAAAGA    194

BSNT_04227___    195 AGACGAGCATATGCT----GTCATTGATTGAGGAAACTTATTGTTTCACG    240
                     |||.||..|.|||||    ||||||||   |||..| |||||..||...|
BL00383___ytx    195 AGATGAATACATGCTTTCGGTCATTGA---AGGCGA-TTATTACTTTTTG    240

BSNT_04227___    241 GACCAGGATGAACAGCAGCAAATCCTTCAGCTCGCACACAGTATTATTGA    290
                     ||||.|||||||||||||||.||.|||||..|.||.|||||.|||||.||
BL00383___ytx    241 GACCGGGATGAACAGCAGCAGATTCTTCAATTGGCCCACAGCATTATGGA    290

BSNT_04227___    291 AGGTGAAGCAGCCGATCTTCCGTTTGAGCCGCTGAAGCTTTCACGGA---    337
                     .||.|||...|..|..|||         ||.||.||     ||.|||   
BL00383___ytx    291 GGGCGAACTTGAAGGGCTT---------CCTCTCAA-----CAAGGACGA    326

BSNT_04227___    338 -----------AACA----ATCTATTTTGGATGAACTCCAAACGATCTGT    372
                                ||||    ||| |||   .|.||.||||||.||||||||
BL00383___ytx    327 CACCCCTCGCGAACATTACATC-ATT---CAGGAGCTCCAAGCGATCTGT    372

BSNT_04227___    373 TTAGAGGAAGGAGTATTTTACATTCGCTCCTTTCAGACCTTCCGACTTG-    421
                     .|.||||||...||.||||..|||||.||.|||..|||.||.||.|||| 
BL00383___ytx    373 CTTGAGGAAAACGTCTTTTCGATTCGGTCATTTATGACGTTTCGCCTTGC    422

BSNT_04227___    422 GATCA-TACTATAAGCAGCTGAGAGATATTA--CAGAAGCAGCGATTGAT    468
                     ||  | ||.|||.|.|..||  .||||.|||  ..||.||.|||||.||.
BL00383___ytx    423 GA--AGTATTATGAACGCCT--CAGATCTTATGTGGAGGCGGCGATCGAC    468

BSNT_04227___    469 GAATATAAGATGGAACAGGAATATCAAAACTTTATTCAAACACTCAGAGA    518
                     ||.|||||.|||||.|||||||||||.|..||.||||||.|.||.|||||
BL00383___ytx    469 GAGTATAAAATGGAGCAGGAATATCAGACATTCATTCAATCGCTGAGAGA    518

BSNT_04227___    519 CTATGTAAACGCCAAACAGCCGCGAAT-------CAAAAAAGTGCATATT    561
                     |||.||.|...|.|||.|||||   ||       |    |.||.||.|||
BL00383___ytx    519 CTACGTCATGTCGAAAGAGCCG---ATGCTTGACC----ATGTCCACATT    561

BSNT_04227___    562 GTCCATGATGGTTCCTTTACATTATGGGAGCTGCGCTATGTGCCGGAACG    611
                     ||.||.||.||||.||||..|||.|||||..|....|||.|..|.|||||
BL00383___ytx    562 GTGCACGACGGTTACTTTGTATTGTGGGAATTAAAGTATATTTCTGAACG    611

BSNT_04227___    612 GGAAAAAATGAAATACATAGACAGGAGATTTGTCCGGGATCATCCTATGT    661
                     ||||.|||..|||||||||||||||.|.||.||..|.||.||.||.||||
BL00383___ytx    612 GGAACAAAAAAAATACATAGACAGGCGGTTCGTAAGAGAACACCCAATGT    661

BSNT_04227___    662 ATATTGATTCTCATTTGCTCGCGCCGCTGATTTCCATTGCGCCTGATGAA    711
                     ||||||||||.|||.|.||.||.|||||..|.||.||||||||.||..||
BL00383___ytx    662 ATATTGATTCCCATCTCCTGGCTCCGCTCGTATCGATTGCGCCGGAAAAA    711

BSNT_04227___    712 GTCGTGCTTTATACCGACCAGCCCGAGCACATG--ATGG--CAAGGACCA    757
                     .|.|..||.|||||.||  ||.|||.|.|||.|  ||||  ||  |||||
BL00383___ytx    712 ATAGACCTCTATACAGA--AGACCGGGAACACGCCATGGTTCA--GACCA    757

BSNT_04227___    758 TTCAAAACGTATTTCAAGAGAGAGTGGAAATGCTTCCGCT--GCATGCTT    805
                     |||||||..|.|||||.|||||.|||...||.||||||||  ||  ||.|
BL00383___ytx    758 TTCAAAATATTTTTCAGGAGAGGGTGCGGATTCTTCCGCTTGGC--GCCT    805

BSNT_04227___    806 TTACAGATGCAGAAATAC----CGGTGAAGCAATC--GAAAGGATGA    846
                     || ||...||.|.||.||    .||...||||.||  ||        
BL00383___ytx    806 TT-CATCCGCGGGAAAACATTTTGGAAGAGCATTCTTGA--------    843


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04227 and BL00383

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
