Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04327 and BL00378
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:28
# Commandline: needle
# -asequence dna-align/BSNT_04327___acuC.1.5803.seq
# -bsequence dna-align/BL00378___acuC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04327___acuC-BL00378___acuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04327___acuC-BL00378___acuC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04327___acuC
# 2: BL00378___acuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1248
# Identity: 844/1248 (67.6%)
# Similarity: 844/1248 (67.6%)
# Gaps: 144/1248 (11.5%)
# Score: 2884.0
#
#
#=======================================
BSNT_04327___ 1 ATGGCCGTCAGAGCAAAGGGATCTGCTATGAGAGACAGTGTATTTATCTA 50
||||..|||||.||||||||.|.
BL00378___acu 1 ---------------------------ATGAAGGACAGCGTATTTATTTT 23
BSNT_04327___ 51 TTCTCCATCCTACCAAACCTATATGTTTCATCAGGAGCATCCCTTTAATC 100
||||||.||.||.|||||||||...||||||||.||.||.||.|||||||
BL00378___acu 24 TTCTCCCTCATATCAAACCTATCAATTTCATCAAGACCACCCGTTTAATC 73
BSNT_04327___ 101 AGCAGCGGGTTCTGT-TAACATATGATTTGCTTAAGACGATCAATGCCTT 149
|||.|||.| |||.| |||||||.|||.|..|.||.|||.||...||.||
BL00378___acu 74 AGCTGCGAG-TCTATGTAACATACGATCTTTTGAACACGGTCGGCGCATT 122
BSNT_04327___ 150 TGATGATGGAGA---CATTGTCACCCC-----CAGACTCGCTTCAGAAGA 191
|||....||||| .|||| |||| || ||..|||||..
BL00378___acu 123 TGAACCGGGAGAAACGATTG---CCCCGCGCGCA-----GCGACAGAAAC 164
BSNT_04327___ 192 GGAGCTTTCCCTTGTCCACACGGACGATTACATTCA-GGCCGTAAAGCTT 240
.|||||....|||||.|||||||.||||||.| ||| ||||||..|||||
BL00378___acu 165 CGAGCTCGAGCTTGTTCACACGGGCGATTATA-TCAGGGCCGTCCAGCTT 213
BSNT_04327___ 241 GCGGGCGCCGGAAAGCTTCCCGCTGAAGAAGGAGAAAGCTACGGGCTCGG 290
||.||.||.||||||||.||.||.|..|||.|.||||.|||||||||.||
BL00378___acu 214 GCAGGGGCGGGAAAGCTCCCGGCAGCCGAAAGCGAAAACTACGGGCTTGG 263
BSNT_04327___ 291 CACTGAAGACACACCCGTCTTTGCCGGCATGCACGAAGCGGCATCACTCT 340
.||.||.||.||.||.||.||||||||.|||||.|||||.||.||.||.|
BL00378___acu 264 AACGGAGGATACCCCTGTTTTTGCCGGGATGCATGAAGCCGCCTCCCTTT 313
BSNT_04327___ 341 TGGTCGGCGGCACTTTAACGGCCGCAGACTGGGTCATGTCAG-------- 382
||||.|||||.||..|.|||||.|||||||..||||||.|.|
BL00378___acu 314 TGGTAGGCGGAACGCTGACGGCTGCAGACTATGTCATGACGGGCAAAGCT 363
BSNT_04327___ 383 -GACAAGCCCTGCATGCGGCAAACCTTGGCGGAGGGCTTCATCACGGCTT 431
||||.||||| .||.|||||.||.||||||||.|||||.||
BL00378___acu 364 AGACACGCCCT---------CAATCTTGGAGGCGGGCTTCACCACGGGTT 404
BSNT_04327___ 432 TCGTGGGAGAGCTTCAGGGTTTTGCATATATAATGACAGCGCTGTGGCGA 481
..|.||.||.||||||||.||||||.|.|||||||||||..|.||.|.||
BL00378___acu 405 CAGAGGAAGGGCTTCAGGCTTTTGCGTCTATAATGACAGTTCAGTTGTGA 454
BSNT_04327___ 482 TTCAATATATCCAGAAAAAATACAGATCCAGG-----GTACTTTATATTG 526
|.|..||..|.||||||||||| .||.| ||..|.|||||||
BL00378___acu 455 TACGTTACTTGCAGAAAAAATA-----TCATGCGAAAGTTTTATATATTG 499
BSNT_04327___ 527 ATACCGACGCCCACCACGGGGACGGTGTGCAATTTACCTTTTACGATAAT 576
||||.||||||||.|||||.|||||.|||||.|||||.||.||.|||.||
BL00378___acu 500 ATACAGACGCCCATCACGGCGACGGGGTGCAGTTTACGTTCTATGATGAT 549
BSNT_04327___ 577 CCTGACGTATGCACGCTGTCCATTCATGAAACAGGAAGGTATTTATTCCC 626
|||..|||.|||||..|.||.||.|||||||||||..|.||..|||||||
BL00378___acu 550 CCTTCCGTCTGCACCGTCTCGATACATGAAACAGGCCGCTACCTATTCCC 599
BSNT_04327___ 627 TGGAACCGGTCAGATCCAAGAAAAAGG-CA--GCGGAAAAGGATATGGCT 673
.|||||.||.|||.|.||.||||.||| || ||| ||||.||.||||
BL00378___acu 600 GGGAACGGGGCAGGTTCAGGAAAGAGGTCATGGCG---AAGGCTACGGCT 646
BSNT_04327___ 674 ATTCCTTTAATATCCCGCTTGACGCTTTTACAGAGGATGATTCTTTTCTT 723
||.|.||||||||||||||.||.||.||.|||||.|||||.|||||||||
BL00378___acu 647 ATGCTTTTAATATCCCGCTCGATGCCTTCACAGAAGATGAGTCTTTTCTT 696
BSNT_04327___ 724 GAGGCTTACCGGACAGCAGCTTCAGAAGTCGCCGCTTATTTCAAGCCCGA 773
||..|.||||||||.||.|.|||.|||.|.||||..|.||||||.||.||
BL00378___acu 697 GATTCCTACCGGACGGCTGTTTCTGAAATAGCCGAGTTTTTCAAACCGGA 746
BSNT_04327___ 774 TGTCATTATCAGCCAAAACGGCGCCGATGCCCATTACTACGACCCGCTGA 823
|||||||.|....||||||||.||.||.||.|||||||||||.|||||||
BL00378___acu 747 TGTCATTTTGTCGCAAAACGGAGCTGACGCACATTACTACGATCCGCTGA 796
BSNT_04327___ 824 CGCATTTATCAGCA--ACAATCAATATATACGAAGAAATCCC-------- 863
|.||.||.| ||| ||.||.||.||.||||||||.||.||
BL00378___acu 797 CACACTTGT--GCACGACGATGAAGATTTACGAAGAGATTCCAAAGCTCG 844
BSNT_04327___ 864 ----CCGTCTTGCACACACTTTGGCTCATCAATATTGCGGAGGGAAATGG 909
|...||||||||||| .||||||.|.||.|.||||
BL00378___acu 845 CTCACGAACTTGCACACAC------------CTATTGCAGCGGAAGATGG 882
BSNT_04327___ 910 ATTGCAGTCGGAGGCGGCGGATATGATATTTGGCGCGTCGTGCCCCGCGC 959
||.||.|||||.||.|||||.||.||.||||||||||||||.||..|.||
BL00378___acu 883 ATCGCTGTCGGCGGAGGCGGCTACGACATTTGGCGCGTCGTACCGAGGGC 932
BSNT_04327___ 960 CTGGGCCAGAATATGGCTTGAAATGAAGGGAATTGACCCGGGACACGAGA 1009
.|||||.|||||.||||||||||||||.||.||.||.|| |.|.||||
BL00378___acu 933 ATGGGCAAGAATCTGGCTTGAAATGAAAGGGATGGAACC---AGAGGAGA 979
BSNT_04327___ 1010 TCCCGCCGGAATGGATTGCTAAATGGCAAAAACAATGCCCCG-------- 1051
....|||.||| |||||||..|||.|||| |
BL00378___acu 980 AAATGCCTGAA---------AAATGGCTGAAAAAATG----GGGGAAACA 1016
BSNT_04327___ 1052 ------TGGCC--CTTCCGTCGAGCTGGAGCGATCCGGCTGATTTATATC 1093
||.|| |||||..|.|.||||..|||.||||..|||||.||||
BL00378___acu 1017 GGCATCTGTCCGGCTTCCTGCCAACTGGTCCGACCCGGAAGATTTGTATC 1066
BSNT_04327___ 1094 CTCCGATTCCCCGCAAGCCTGAAATTACAGAAAAAAATGCCCAAACTGTC 1143
||||.|||||..|.||..|.|||||.||.||||||||.||.|||||.||.
BL00378___acu 1067 CTCCAATTCCAAGAAAAACCGAAATAACGGAAAAAAACGCACAAACCGTT 1116
BSNT_04327___ 1144 AGCAAAGCATTATATGCGATACGTTCTGAACAGCAAAGAACAAAGTAA 1191
..||||||..|.|||.||||.||.||||..|||| |.||.|..|||
BL00378___acu 1117 GCCAAAGCCCTTTATCCGATTCGCTCTGCCCAGC---GTACCACTTAA 1161
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