Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04326 and BL00377
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:28
# Commandline: needle
# -asequence dna-align/BSNT_04326___acuB.1.5803.seq
# -bsequence dna-align/BL00377___acuB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04326___acuB-BL00377___acuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04326___acuB-BL00377___acuB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04326___acuB
# 2: BL00377___acuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 704
# Identity: 449/704 (63.8%)
# Similarity: 449/704 (63.8%)
# Gaps: 118/704 (16.8%)
# Score: 1334.0
#
#
#=======================================
BSNT_04326___ 1 ATGATTGTTGAGCAAATCATGAAAAGAGATGTCATTACATTAACGAAGAC 50
|||||||||||..|||||||||||.|.|||||..|.|||.||.|.|..||
BL00377___acu 1 ATGATTGTTGAAAAAATCATGAAACGGGATGTTGTGACACTATCCAGAAC 50
BSNT_04326___ 51 GGATACGCTTGAAACAGCAAT-------ATGCAAACTGAAGGAATTCCAT 93
.||||||.|||||..|||.|| ||||.||| ||||||.
BL00377___acu 51 CGATACGATTGAAGAAGCGATCAAACGCATGCGAAC-------ATTCCAC 93
BSNT_04326___ 94 ATCAGGCATCTGCCTGTTGTAGATGAA----GAACGACACGTGATCGGCA 139
||.|.|||.||.||.||..|..||||| ||||| ||.||.||||
BL00377___acu 94 ATAAAGCACCTTCCCGTCATCAATGAACGGGGAACG----GTCATAGGCA 139
BSNT_04326___ 140 TGATTACAGACAGAGACAT-GAAACAGGCCAGCCCGAGTATTTTTGAAGA 188
|..|.||.|||||.|||.| .||||| ||.||.||||||||.||||...|
BL00377___acu 140 TTGTCACGGACAGGGACGTCAAAACA-GCAAGTCCGAGTATCTTTGCCCA 188
BSNT_04326___ 189 AAACA-----AACGAAGCCTATTTCTCACACGAAGC--GTAGATTCAATT 231
||||| ||||||| |||| .|..|||| ||.||....||.
BL00377___acu 189 AAACAGATCTAACGAAG---ATTT----AAAAAAGCCGGTGGAACTGATC 231
BSNT_04326___ 232 ATGAAAAAGGATGTTGTCTGCGTCCACCCGTTAGATTTTGTCGAAGAAAT 281
|||...||.||.||..||..||..||||||.|.|||||||.|||||||||
BL00377___acu 232 ATGTCCAAAGAAGTGATCACCGGTCACCCGCTTGATTTTGCCGAAGAAAT 281
BSNT_04326___ 282 ATCAGCCGTGTTCTACGAGCATGGCATCGGCTGCCTTCCAGTGGTACACC 331
|||||||||.||.|..||.||.|..|||||||||||.||..|.|||
BL00377___acu 282 ATCAGCCGTCTTTTTTGAACACGAAATCGGCTGCCTCCCGATCGTA---- 327
BSNT_04326___ 332 ATCAAAAA--------TTAATAGGCATTTTAACAAAAACCGATTTGCTGC 373
||||| || .|.|||||..|.||||||.||||||||||||
BL00377___acu 328 ---AAAAACGGAAAGCTT-GTCGGCATCGTGACAAAATCCGATTTGCTGC 373
BSNT_04326___ 374 GGACGTTTGTCAAATTGACAGGCGCTGACCA---GCCGGGATCGCAAATT 420
..|||||.||..|..|||||||.|| ||| .||.||.||.|||||.
BL00377___acu 374 ATACGTTCGTTCAGCTGACAGGAGC---CCATTTTCCAGGCTCCCAAATC 420
BSNT_04326___ 421 GAGATAAAAGTAAACG---ACATCACCAAAAGCCTCGCTGAGATCAGCAG 467
||.||.|| ||.|| |.|||.||..||||||||||||.||||||
BL00377___acu 421 GAAATTAA---AACCGATCATATCGCCCGAAGCCTCGCTGATATCAGC-- 465
BSNT_04326___ 468 TCTTTGCCAAGACCTTCA--AGTG----AAA-----ATATTAAGCGTGCT 506
||| |.||||| || | ||| |||||.||||||||
BL00377___acu 466 -----GCC---ATCTTCAGCAG-GCGCCAAATCGCCATATTGAGCGTGCT 506
BSNT_04326___ 507 TGTTTATCCGC----ATGACGATCCCGGTGTAAAAGTGCTTGTCTTCCGT 552
.||.||||| | ||||.||| |.|...|||.|.||.||.||.||.
BL00377___acu 507 CGTATATCC-CGGTGATGAAGAT---GATTCGAAAATACTCGTGTTTCGC 552
BSNT_04326___ 553 GTAAAAACGATGAATCCGCTGCCGTTTTTGCAGGCATTACAAAGA----- 597
||..|||||||||||| |.|||..|.| ||| ||||||
BL00377___acu 553 GTTCAAACGATGAATC--CCGCCTCTAT------CAT--CAAAGACGTAA 592
BSNT_04326___ 598 -----AATGGACACCACG-TCTTATGGCCGTCAGAGCAAAGGGATCTGCT 641
||.||..|.||.| |||| ||||||.|.|..|||||||||.|||.
BL00377___acu 593 AATCCAAAGGGTATCAGGTTCTT-TGGCCGGCTGTTCAAAGGGATTTGCC 641
BSNT_04326___ 642 ATGA 645
||||
BL00377___acu 642 ATGA 645
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