Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04309 and BL00368
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:27
# Commandline: needle
# -asequence dna-align/BSNT_04309___braB.1.5803.seq
# -bsequence dna-align/BL00368___braB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04309___braB-BL00368___braB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04309___braB-BL00368___braB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04309___braB
# 2: BL00368___braB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1423
# Identity: 934/1423 (65.6%)
# Similarity: 934/1423 (65.6%)
# Gaps: 170/1423 (11.9%)
# Score: 2805.5
#
#
#=======================================
BSNT_04309___ 1 ATGAAACAC-TCACTGCCTGTCAAAGATACCATTATTATTGGTTTCATGC 49
|||||| || |||||..|.|..||.||.||.|.....|||||..|.||||
BL00368___bra 1 ATGAAA-ACTTCACTATCCGCTAAGGAAACGACGGCGATTGGGCTTATGC 49
BSNT_04309___ 50 TATTTGCGTTATTCTTTGGAGCAGGAAATATGATCTATCCGCCGGAACTT 99
|.||.||..|.||.||.|||||.|||||||||||.|.|||.||..|.|||
BL00368___bra 50 TGTTCGCCCTCTTTTTCGGAGCGGGAAATATGATTTTTCCTCCCCAGCTT 99
BSNT_04309___ 100 GGACAAGCAGCCGGACACAACGTCTGGAAGGCCATCGGCGGATTTTTACT 149
||.|||||.||||||.|.||..|.|||..|||.|||..||||||.||.||
BL00368___bra 100 GGTCAAGCTGCCGGAGAGAATATTTGGCCGGCTATCATCGGATTCTTGCT 149
BSNT_04309___ 150 GACAGGGGTAGGCCTGCCGCTTCTCGGCATTATCGCCATCGCATTAACCG 199
|||.||.||.||.||.||.||.||||||.|.|||||..|.||.||||
BL00368___bra 150 GACGGGCGTTGGTCTTCCTCTGCTCGGCGTCATCGCGGTTGCTTTAA--- 196
BSNT_04309___ 200 GTAAGG--ACGCTAAAGGCCTTGCTGACAAAGCGCACCCTGTTTTCGGCA 247
|||| ..||.||||||||.|||||||||||.|||||.||.|||||||
BL00368___bra 197 --AAGGGAGTGCAAAAGGCCTAGCTGACAAAGCCCACCCGGTCTTCGGCA 244
BSNT_04309___ 248 CAATCTTTACTGTCGT--GC-TTTATTTATCAATCGGACCATTATTCGCC 294
|.||.||.| |||| || ||||||||.|.||||||||.|||||.|||
BL00368___bra 245 CGATATTAA---TCGTCAGCATTTATTTAACGATCGGACCTTTATTTGCC 291
BSNT_04309___ 295 ATCCCGAGAACAGGAACTGTTTCATATGAAATTGGCGCTGTTCCGTTTTT 344
||.|||||.||.||||..||||||||.|..||.|..|.||..||||||||
BL00368___bra 292 ATTCCGAGGACGGGAAACGTTTCATACGTCATAGCGGTTGAGCCGTTTTT 341
BSNT_04309___ 345 GACTGGCGTACCAGAAAGACTT--------TCTTTA----TTAATATTTA 382
||.||.||.| |||||| ||.||.||||
BL00368___bra 342 ------------AGGAAAACATTCGTCAAGTCTTTATCTGTTCATCTTTA 379
BSNT_04309___ 383 CACTTATCTTTTTCGGCGTTACGTACTATTTAGCGTTAAACCCATCCAAG 432
|.||.|||||||||||..|.||.||.|..||.||||||||||||..||||
BL00368___bra 380 CCCTGATCTTTTTCGGGATCACTTATTTCTTGGCGTTAAACCCAAGCAAG 429
BSNT_04309___ 433 GTTGTCGATCGAGTCGGAAAAATTCTGACTCCCATCAAATTCACGATTAT 482
.||||.||.||..||||.||||||.|.||.||.||...|||.||..|.||
BL00368___bra 430 CTTGTTGACCGCATCGGTAAAATTTTAACACCGATATTATTGACTGTAAT 479
BSNT_04309___ 483 TTTAATCATTGTTCTCAAAGCCATCTTCACGCCGATGGGC-GGATTGGGC 531
...||||.|.||..|||||||..|..||||.||||||||| |.||.|||
BL00368___bra 480 CGCAATCTTAGTCATCAAAGCGTTTATCACCCCGATGGGCAGCATCGGG- 528
BSNT_04309___ 532 GCCGTGACAGAAGCATATAAAGGAACACCGGTTTTTAAAGGATTTTTAGA 581
.|.||||||||.||.||..||....|||||.|.|||...|||||||||||
BL00368___bra 529 TCTGTGACAGAGGCTTACCAATCCGCACCGCTGTTTGTCGGATTTTTAGA 578
BSNT_04309___ 582 AGGCTATAAAACAATGGACGCACTTGCTTCAATTGTATTTGGCGTTGTCG 631
|||.||||||||.|||||.||..|.|||||||||||.|||||..||||||
BL00368___bra 579 AGGGTATAAAACGATGGATGCGATCGCTTCAATTGTTTTTGGAATTGTCG 628
BSNT_04309___ 632 T--TGTA----AATGCTGTAAAAA--GCAAAGGCGTTACACAGTCTAAAG 673
| | || ||| ||||.| || ||.||.||| |.||.||||
BL00368___bra 629 TCAT-TACGGCAAT----TAAAGACCGC---GGAGTCACA-AATCCAAAG 669
BSNT_04309___ 674 CTC--TTGCTGCAGCCTGCATTAAAGCAGGTGTGAT------TGCAGCTT 715
|| |.||.||..|.|||||.|||||.|| ||| |||||
BL00368___bra 670 -TCAATCGCCGCTTCATGCATCAAAGCGGG---GATAGTCGCTGCAG--- 712
BSNT_04309___ 716 TAGGCCT--GACTTTCATTTATGTATCCCTTGCTTATTTAGGTGCAACAA 763
|.||.|| ||| ||.||||.||.||.||.|||||||||||.||.||||
BL00368___bra 713 TCGGTCTCGGAC--TCGTTTACGTTTCACTCGCTTATTTAGGGGCGACAA 760
BSNT_04309___ 764 GC--ACAAATGCCATCGGTCCTGTTGGTGAA-GGAGCTAAAATTTTATCT 810
|| ..||| ||.|||||.| |.|.|..|| ||.|...||||.||.||.
BL00368___bra 761 GCGTTGAAA--CCGTCGGTTC-GCTCGACAACGGCGGCGAAATATTGTCC 807
BSNT_04309___ 811 GCGTCTTCC-CATTATTTATTCGGGTCATTGGGCAACATCGTACTCGGAG 859
....||||| || |||||.|||||.||..|.||.||...|||.|||| |
BL00368___bra 808 AAAGCTTCCGCA-TATTTGTTCGGCTCGCTTGGAAATGCCGTGCTCG--G 854
BSNT_04309___ 860 CA--GCGAT----TACAGTCGCATGTTTAACAACAAGCATCGGCCTTGTC 903
|| ||||| | ||||.||..|.||.||||||.|.||.|||||.
BL00368___bra 855 CATCGCGATCTTGT----TCGCCTGCCTGACGACAAGCGTAGGACTTGTT 900
BSNT_04309___ 904 ACATCTTGCGGCCAATATTTTTCAAAACTTATTCCG--GCATTATCATAT 951
.|.||||||||..|.|||||||||||.||.|||||| || |.||.||.
BL00368___bra 901 TCTTCTTGCGGAGAGTATTTTTCAAATCTGATTCCGAAGC--TCTCTTAC 948
BSNT_04309___ 952 AAAATTGTCGTTACGATTGTCACGTTATTCAG-CTTGATCATTGCGAATT 1000
|||...||.||.|..|||||.|||.|.||||| |||| |.|||||.||||
BL00368___bra 949 AAAGCAGTTGTCATCATTGTGACGCTTTTCAGCCTTG-TGATTGCCAATT 997
BSNT_04309___ 1001 TCGGACTCGCGCAAATTATCGCGTTTTCTGTTCCTATTTTATCAGCTATC 1050
|||||||..|..||||.|||.|||||||.||.||.|||.|.||.||.||.
BL00368___bra 998 TCGGACTGACAGAAATCATCTCGTTTTCAGTACCGATTCTGTCTGCGATT 1047
BSNT_04309___ 1051 TATCCGCTTGCCATTGTCATTATCGTT---CTTTCCTTCATCGATAAGAT 1097
|||||||||||.||.||| .||||| ||.||.|||||.||||||.|
BL00368___bra 1048 TATCCGCTTGCGATCGTC---GTCGTTTTGCTCTCATTCATTGATAAGCT 1094
BSNT_04309___ 1098 CTTTAAAGAAAGACGCGAAGTGTACATCG-----CTTGCTTGATCGGTAC 1142
.|||||.|||.|.|||||.||.||.|||| ||| |||...||
BL00368___bra 1095 GTTTAATGAACGGCGCGAGGTCTATATCGGCACCCTT-----ATCCCGAC 1139
BSNT_04309___ 1143 AGGACTTTTCAGTATTTTAGACGGTATCAAA------------------G 1174
||||.||.|.||.||..|.||||| ||.||| |
BL00368___bra 1140 AGGAATTCTGAGCATCATCGACGG-ATTAAACGCGGCGAAAATCCCGCTG 1188
BSNT_04309___ 1175 CAGCCGGTTTTTCACTTGGATCTTTAGATGTGTTTCTAAATGCGAATCTT 1224
..||||||| |.| |||.|.| ||||.|||||..|.
BL00368___bra 1189 GGGCCGGTT----------AAC----GATATCT---TAAAAGCGAACATC 1221
BSNT_04309___ 1225 CCTCTTTACAGCCTCGGCATCGGCTGGGTGCTTCCAGGAATCGTCGGAGC 1274
||.||.|.||||.|.||..||||||||||..||||.|...|..||||.||
BL00368___bra 1222 CCGCTGTTCAGCATGGGTGTCGGCTGGGTCGTTCCGGCTGTTATCGGCGC 1271
BSNT_04309___ 1275 GGTTATCGGCTATGTGCTGACCTTATTCAT--------CGGACCATCCAA 1316
.||.|||||.||..|..||||.||.||.|| ||||..| |||
BL00368___bra 1272 AGTGATCGGTTACATTGTGACATTTTTTATCGCTTTGCCGGAGGA--CAA 1319
BSNT_04309___ 1317 ACAGCTTAATGAA-ATAAGTTAA 1338
| ||||.||| .|.||.|.|
BL00368___bra 1320 A----TTAAAGAACGTCAGCTGA 1338
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