Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04217 and BL00359
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:18
# Commandline: needle
# -asequence dna-align/BSNT_04217___lrgA.1.5803.seq
# -bsequence dna-align/BL00359___lrgA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04217___lrgA-BL00359___lrgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04217___lrgA-BL00359___lrgA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04217___lrgA
# 2: BL00359___lrgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 466
# Identity: 294/466 (63.1%)
# Similarity: 294/466 (63.1%)
# Gaps: 77/466 (16.5%)
# Score: 956.5
#
#
#=======================================
BSNT_04217___ 1 ATGAGTGCTAAAAAAGTGTACGGGTTTTTAACACAAGCATTTATTTTTGC 50
||||..|.||||||||..|||||.||||||||.||.||||||||||||||
BL00359___lrg 1 ATGAAGGGTAAAAAAGAATACGGCTTTTTAACTCAGGCATTTATTTTTGC 50
BSNT_04217___ 51 CGTCATTATGCTGGTTTCAAATATGATTGCCGCTATTGTCCCAATACCTA 100
.||.||.|||.|..|||||||....||.|||||..||.|.||.||.||.|
BL00359___lrg 51 TGTTATGATGTTTATTTCAAACGGAATCGCCGCGGTTCTGCCCATCCCGA 100
BSNT_04217___ 101 TCCCGGCATCGGTTGTAGGGTTGGTCTTATTATTT-CTCCTAT---TATG 146
|.||..||||.||..|.||.|||||..|.||.||| | || |.||
BL00359___lrg 101 TTCCTCCATCTGTCATCGGTTTGGTGCTGTTGTTTGC----ATTGCTGTG 146
BSNT_04217___ 147 TTTGAAAGTCATTAAACTGGAACAAGTGGAAACGCTCGGAACGTCTTTAA 196
|..||||||..|.||.||.||||||||.|||.|||||||.|||.|..|.|
BL00359___lrg 147 TACGAAAGTGCTGAAGCTTGAACAAGTTGAATCGCTCGGCACGGCGCTCA 196
BSNT_04217___ 197 CCTCTCTGATCGGATTTTTATTTGTTCCGTCAGGTATATCTGTTATGAAT 246
|.||.||||||||.|||||.||.||||||||.||.|||||.||.||||||
BL00359___lrg 197 CTTCGCTGATCGGCTTTTTGTTCGTTCCGTCGGGAATATCAGTGATGAAT 246
BSNT_04217___ 247 TCGCTTGGTGTGATGCAGCAATACGGCCTGCAAATTGTTCTTGTCATTCT 296
|||||.||.||.|||.||.|||||||..|||..||.||.||.||.|||.|
BL00359___lrg 247 TCGCTCGGCGTCATGGAGAAATACGGATTGCCGATCGTCCTCGTGATTTT 296
BSNT_04217___ 297 GCTCGCAACGATTATTCTGCTGGGGGCTACGGGATTGTTTTCTCAGCTGA 346
.||.||.||..|.||||||||.|..||.||.|||||||||||.|||.|.|
BL00359___lrg 297 CCTGGCCACCGTCATTCTGCTTGCAGCGACAGGATTGTTTTCACAGTTCA 346
BSNT_04217___ 347 TTCTGTCGCTGAGCGGAAAACGCAAA--ACCG-CAGCGGACA-------T 386
|||||||..| |||.|| ||| |||| || .|||| |
BL00359___lrg 347 TTCTGTCTGT---CGGCAA----AAAGGACCGTCA--AGACACACGAGTT 387
BSNT_04217___ 387 GAA------AACAAAAACAG-----TGCAAAGCCCGCAGAACAATAACGA 425
||| || |||||||| ||.
BL00359___lrg 388 GAACCAGCCAA-AAAAACAGCATCTTGA---------------------- 414
BSNT_04217___ 426 ACTCGTTCACCATTAA 441
BL00359___lrg 414 ---------------- 414
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