Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04216 and BL00358

See Amino acid alignment / Visit BSNT_04216 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:18
# Commandline: needle
#    -asequence dna-align/BSNT_04216___lrgB.1.5803.seq
#    -bsequence dna-align/BL00358___lrgB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04216___lrgB-BL00358___lrgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04216___lrgB-BL00358___lrgB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04216___lrgB
# 2: BL00358___lrgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 704
# Identity:     530/704 (75.3%)
# Similarity:   530/704 (75.3%)
# Gaps:          28/704 ( 4.0%)
# Score: 1982.0
# 
#
#=======================================

BSNT_04216___      1 ATGGAAAGCACAATGAGTCCTTATTTTGGGATTGTCGTATCACTTGCTGC     50
                                 ||||..||||||||.||.||.|||||.|||||.||.||
BL00358___lrg      1 ------------ATGACACCTTATTTCGGTATCGTCGTTTCACTGGCCGC     38

BSNT_04216___     51 ATTCGGCATCGGCACCTTTTTATTTAAGAAAACGAAAGGCTTCTTCCTTT    100
                     |||.||||.||||||.|||||||||||.|||.|.||.||.||.|||.|.|
BL00358___lrg     39 ATTTGGCACCGGCACTTTTTTATTTAAAAAATCAAATGGTTTTTTCTTAT     88

BSNT_04216___    101 TCACTCCTTTGTTTGTTGCCATGGTGCTGGGGATCGCATTTTTAAAAATC    150
                     ||||.|||.|||||||.||.|||.|.||.||||||||.||||||||||||
BL00358___lrg     89 TCACGCCTCTGTTTGTCGCGATGATTCTTGGGATCGCGTTTTTAAAAATC    138

BSNT_04216___    151 GGCGGTTTTTCCTACGCGGATTATAATAACGGGGGAGAGATCATTAAGTT    200
                     |||||||||||.||.|.|||.||.||.|.|||.|||||.|||||||||||
BL00358___lrg    139 GGCGGTTTTTCATATGAGGACTACAAGAGCGGCGGAGACATCATTAAGTT    188

BSNT_04216___    201 TTTCCTTGAACCGGCAACGATCGCATTTGCAATTCCTTTGTACAAACAAA    250
                     .||..|.||.||.||.||.||.||.||.||.||||||||.||.|||||..
BL00358___lrg    189 CTTTTTGGAGCCCGCCACAATTGCGTTCGCCATTCCTTTATATAAACAGG    238

BSNT_04216___    251 GAGATAAGCTTAAAAAATACTGGTGGCAAATCATGGCCTCCATTATTGCC    300
                     ..||.|||.|.|||||.||.|||..|||||||.|.|...||||||||||.
BL00358___lrg    239 CGGACAAGTTGAAAAAGTATTGGCTGCAAATCCTTGGTGCCATTATTGCA    288

BSNT_04216___    301 GGCTCTATCTGCTCTGTCACGATTGTTTATTTGCTCGCTAAAGGC-ATTC    349
                     |||||..|||||||.||..|..|.||.|||.||.|||| |||.|| .|.|
BL00358___lrg    289 GGCTCCGTCTGCTCGGTTGCCGTCGTCTATCTGATCGC-AAACGCGCTCC    337

BSNT_04216___    350 ATCTCGATTCG--GCCGTAATGAAAAGCATGCTTCCGCAGGCGGCTACAA    397
                     ||||.||  ||  |||||.||||||||||||||.||.|||||.||.||||
BL00358___lrg    338 ATCTTGA--CGGAGCCGTCATGAAAAGCATGCTGCCCCAGGCCGCCACAA    385

BSNT_04216___    398 CGGCAATTGCGCTTCCTTTATCAAAAGGCATCGG-GGGCATCAGCGACAT    446
                     ||||.|||||.|||||||||||||||||.||||| |||..||| .||.||
BL00358___lrg    386 CGGCGATTGCTCTTCCTTTATCAAAAGGGATCGGCGGGATTCA-AGATAT    434

BSNT_04216___    447 CACAGCCTTTGCGGTCATCTTTAACGCTGTCATCGTATATGCGCTCGGAG    496
                     .||.|||||.||.||||||||||||||.||.|||||.|||||||||||.|
BL00358___lrg    435 TACGGCCTTCGCCGTCATCTTTAACGCAGTGATCGTCTATGCGCTCGGCG    484

BSNT_04216___    497 CATTGTTCTTGAAGGTGTTTAAAGTGAAAAATCCGATTTCTAAAGGATTG    546
                     |..|.||.|||||..|.||.||||||.|..|||||||..|.|||||.|||
BL00358___lrg    485 CGCTTTTTTTGAAAATCTTCAAAGTGCAGCATCCGATCGCCAAAGGGTTG    534

BSNT_04216___    547 GCTCTTGGAACATCCGGACATGCACTTGGTGTAGCGGTCGGGATTGAGAT    596
                     ||.||.||||||||.||||||||.||.||.||.||.|||||.||||||||
BL00358___lrg    535 GCGCTCGGAACATCAGGACATGCCCTCGGCGTCGCCGTCGGAATTGAGAT    584

BSNT_04216___    597 GGGAGAAGTTGAAGCTGCGATGGCAAGTATTGCTGTTGTCGTAGTAGGAG    646
                     |||.|||||.|||||.||.|||||.||||||||.||||||||.||.||.|
BL00358___lrg    585 GGGGGAAGTCGAAGCGGCAATGGCGAGTATTGCAGTTGTCGTCGTCGGCG    634

BSNT_04216___    647 TGGTAACGGTTTTGGTCATCCC----TGTGTTCGTGCAGCTGATCGGTGG    692
                     |.||.||.||.||.|||.|.||    ||||||    ||..|||||||.||
BL00358___lrg    635 TCGTGACCGTGTTTGTCGTTCCGTTATGTGTT----CAAATGATCGGCGG    680

BSNT_04216___    693 ATAA    696
                     |||.
BL00358___lrg    681 ATAG    684


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