Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04202 and BL00352
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:18
# Commandline: needle
# -asequence dna-align/BSNT_04202___araA.1.5803.seq
# -bsequence dna-align/BL00352___araA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04202___araA-BL00352___araA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04202___araA-BL00352___araA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04202___araA
# 2: BL00352___araA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1576
# Identity: 1074/1576 (68.1%)
# Similarity: 1074/1576 (68.1%)
# Gaps: 179/1576 (11.4%)
# Score: 3485.5
#
#
#=======================================
BSNT_04202___ 1 ATGCTTCAGACAAAGGATTATGAATTCTGGTTTGTGACAGGAAGCCAGCA 50
.||.|||||.|||||....|||..||.||||||||||||||.||||||||
BL00352___ara 1 TTGATTCAGGCAAAGACGCATGTGTTTTGGTTTGTGACAGGCAGCCAGCA 50
BSNT_04202___ 51 CCTATACGGGGAAGAGACGCTGGAACTCGTAGATCAGCATGCTAAAAGCA 100
..||||.||.||||||.||.|..||...|||||..|||||.|.||||..|
BL00352___ara 51 TTTATATGGCGAAGAGGCGGTACAAGAGGTAGAAGAGCATTCCAAAATGA 100
BSNT_04202___ 101 TTTGTGAGGGGCTCA---GCGG-GATTTCTTCCAGATATAAAATC-ACT- 144
|.||..|.||..|.| .||| ||||| .||.|.|.||.|| |.|
BL00352___ara 101 TCTGCAACGGATTAAATGACGGAGATTT----AAGGTTTCAAGTCGAGTA 146
BSNT_04202___ 145 CATAAGCCCGTCGTCACTTCACCGGAAACCATTAGAGAGCTGTT--AAGA 192
|| ||| |.||.|.||||||.|.|||...|.|.|||.|.||||| ||||
BL00352___ara 147 CA-AAG-CGGTGGCCACTTCGCTGGACGGCGTCAGAAAACTGTTTGAAGA 194
BSNT_04202___ 193 GAAGCGGA---GTACAGTGAGACATGTGCTGGCATCATTACATGGATGCA 239
| |||.| |.||...||| ||.||.||||||||.||.||||||||
BL00352___ara 195 G--GCGAACCGGGACGAAGAG---TGCGCAGGCATCATCACCTGGATGCA 239
BSNT_04202___ 240 CACATTTTCCCCTGCAAAAATGTGGATAGAAGGCCTTTCC--TCTTATCA 287
.||.|||||.||.||.|||||||||||....||||||||| .||.| |
BL00352___ara 240 TACGTTTTCACCGGCCAAAATGTGGATTCCCGGCCTTTCCGAGCTGA--A 287
BSNT_04202___ 288 AAAACCGCTTATGCATTTGCATACCCAATATAATCGCGATATCCCGTGGG 337
.||.|||||..|.|||||.||||||||.|.|||.||.||.||.|||||||
BL00352___ara 288 TAAGCCGCTGCTCCATTTTCATACCCAGTTTAACCGGGACATTCCGTGGG 337
BSNT_04202___ 338 GTACGATTGACATGGATTTTATGAACAGCAACCAATCCGCGCATGGCGAT 387
.||..||.|||||||||||.|||||.|..||.||.||.||.||.|||||.
BL00352___ara 338 ATAAAATCGACATGGATTTCATGAATATTAATCAGTCTGCCCACGGCGAC 387
BSNT_04202___ 388 CGAGAGTACGGTTACATCAACTCGAGAATGGGGCTTAGCCGAAAAGTCAT 437
||.||.|||||||..|||....|||||.||||..||...||||||||.||
BL00352___ara 388 CGCGAATACGGTTTTATCGGAGCGAGATTGGGCATTCCTCGAAAAGTAAT 437
BSNT_04202___ 438 TGCCGGCTATTGGGATGATGAAGAAGTGAAAAAAG------------AAA 475
.|||||.||||||||.||...|||||| |||| |||
BL00352___ara 438 CGCCGGATATTGGGAAGACAGAGAAGT----AAAGCGCTCGATCGACAAA 483
BSNT_04202___ 476 TGTCCCAGTGGATGGATACGGCGGCTGCATTAAATGAAAGCAGACATATT 525
||||||....|.||||..||||..|.|||||||.|.|||||.
BL00352___ara 484 --------TGGATGAGCGCAGCGGTCGCATATATTGAAAGCCGCCATATC 525
BSNT_04202___ 526 AAGGTTGCCAGATTTGGAGATAACATGCGTCATGTAGCGGTAACGGACGG 575
||.||.|||.|||||||.||.||||||||..||||.||||||||.||.||
BL00352___ara 526 AAAGTCGCCCGATTTGGGGACAACATGCGGAATGTGGCGGTAACAGAAGG 575
BSNT_04202___ 576 AGACAAGGTGGGAGCGCATATTCAATTTGGCTGGCAGGTTGACGGATATG 625
|||.|||.|.|.||||||.|||||..||||||||...||.||||||||||
BL00352___ara 576 AGATAAGATTGAAGCGCAGATTCAGCTTGGCTGGTCTGTCGACGGATATG 625
BSNT_04202___ 626 GCATCGGGGATCTCGT--------TGAAGTGATGGATCGCATTACGGA-- 665
|.|||||.|||||||| |.|| ||.||.|| ||..||.||
BL00352___ara 626 GAATCGGCGATCTCGTCACGGAGATCAA-TGCTGTAT--CAGAACAGAGT 672
BSNT_04202___ 666 CGA--CGAGGTTGACACGCTTTATGCCGAGTATGACAGA-CTATATGTGA 712
|.| ||||.| || |.| ||||.||||| .|| ||.||||
BL00352___ara 673 CTAAGCGAGCT---CA-----TCT-CCGAATATGA-GGAGCTTTATG--- 709
BSNT_04202___ 713 TCAGTG--AGGAAACAAAACGTGACGAA---GCAAAGGTAGCGTCCATTA 757
|||| .|||| |.|||| ||||.||.| |||.|.|
BL00352___ara 710 --AGTGGCCGGAA---------GGCGAAGCGGCAAGGGAA---TCCGTCA 745
BSNT_04202___ 758 AAGAACAGGCGAAAATTGAGCTTGGCTT-AACCGCTTTTCTT--GAGCAA 804
|.||.||||||...|||||||||||.|| ||.||| |||||| ||||
BL00352___ara 746 AGGAGCAGGCGCGGATTGAGCTTGGATTAAAGCGC-TTTCTTTCGAGC-- 792
BSNT_04202___ 805 GGCGGATACACAGCGTTTACGACATCGTTTGAAGTGCTGCACGGAATGAA 854
||.||.||.||.||.|||||||||.|.|||||||..||.|||||.|||||
BL00352___ara 793 GGAGGCTATACGGCCTTTACGACAACCTTTGAAGACCTCCACGGCATGAA 842
BSNT_04202___ 855 ACAGCTGCCGGGACTTGCTGTTCAGCGCCTTATGGAGAAAGGCTACGGGT 904
.|||||.|||||..|.|||||||||||.||.||||...|||||||.||.|
BL00352___ara 843 GCAGCTTCCGGGTTTGGCTGTTCAGCGGCTGATGGCTGAAGGCTATGGCT 892
BSNT_04202___ 905 TTGCCGGTGAAGGAGATTGGAAGACAGCGGCCCTTGTACGGATGATGAAA 954
|||..||.||||||||||||||.||.||.||.|||||..|||||||||||
BL00352___ara 893 TTGGAGGAGAAGGAGATTGGAAAACGGCTGCGCTTGTCAGGATGATGAAA 942
BSNT_04202___ 955 ATCATGGCTAAAGGAAAAAGAACTTCCTTCATGGAAGATTACACGTACCA 1004
||.|||||....||||||..|||.||.||.|||||.||||||||||||||
BL00352___ara 943 ATGATGGCCGGCGGAAAAGAAACGTCATTTATGGAGGATTACACGTACCA 992
BSNT_04202___ 1005 TTTTGAACCGGGAAATGAAATGATTCTGGGCTCTCACATGCTTGAAGTGT 1054
||||||||||||.|||||||||||.||.|||||.||||||||||||||||
BL00352___ara 993 TTTTGAACCGGGCAATGAAATGATCCTCGGCTCCCACATGCTTGAAGTGT 1042
BSNT_04202___ 1055 G---TCCGACTGTCGCTTTGGATC---AGCCGAAAATCGAGGTTCATCCG 1098
| |.|||.||.| ||.| |.||||.|||.||.||.||||||
BL00352___ara 1043 GCCCTTCGATTGCC------GAACACAAACCGAGAATTGAAGTCCATCCG 1086
BSNT_04202___ 1099 CTTTCGATTGGCGGCAAGGAGGACCCTGCGCGTTTTGTATTTAACGGCAT 1148
||.||.||.||.|..|||||.||.||.|||||..|.||.|||.||||.||
BL00352___ara 1087 CTGTCAATGGGTGCAAAGGATGATCCGGCGCGGCTCGTGTTTGACGGAAT 1136
BSNT_04202___ 1149 --------CAGCGGT-----TCTGCCATTCAAGCTAGCATTGTTGATATT 1185
|.||||| |||.|| ||.|||||.|.
BL00352___ara 1137 TGCAGGTCCTGCGGTCAATGTCTCCC-------------TTATTGATTTG 1173
BSNT_04202___ 1186 GGCGGGCGTTTCCGCCTTGTGCTGAATGAAGTCACCGGTCAGGAAATTGA 1235
|||||.||||||.|.|||||..|.|||.|||| ||||..||.
BL00352___ara 1174 GGCGGACGTTTCAGGCTTGTCATCAATAAAGT---------GGAAGCTGT 1214
BSNT_04202___ 1236 AA---------AAGACATGCCGAATTTACCGGTTGCCCGTGTTCTCTGGA 1276
.| |.||.|||||||||.|.|||||.||.||.||.||.||||
BL00352___ara 1215 GAAGGTTCCGCATGATATGCCGAATCTTCCGGTGGCGCGCGTACTTTGGA 1264
BSNT_04202___ 1277 AGCCGGAGCCGTCATTGAAAACAGCAGCGGAGGCATGGATTTTAGCCGGC 1326
||||..|||||||..|||.||||.|.||.||.||.||||||||.||.|||
BL00352___ara 1265 AGCCTCAGCCGTCTCTGAGAACATCGGCTGAAGCGTGGATTTTGGCTGGC 1314
BSNT_04202___ 1327 GGTGCACATCATACCTGCCTGTCTTATGAACTGACAGCGGAGCAAATGCT 1376
|||||.||.|||||.|||||.||.||..|.||||||||.|||||.|||||
BL00352___ara 1315 GGTGCTCACCATACATGCCTTTCGTACCAGCTGACAGCCGAGCAGATGCT 1364
BSNT_04202___ 1377 TGATTGGGCGGAAATGGCGGGGATCGAA--AGTGTT-CTCATTTCCCGTG 1423
.||||||||.||||||.||||.||.||| .||||| .|||.| ||||
BL00352___ara 1365 CGATTGGGCCGAAATGTCGGGCATTGAAGCGGTGTTGATCAAT---CGTG 1411
BSNT_04202___ 1424 ATACGACAATTCATAAA-CT--GAAACACGAGTTAAAATGGAACGAGGC- 1469
||||.||.||| .|||| || |.| |.||..|.|||||||..||.||
BL00352___ara 1412 ATACAACGATT-TTAAATCTTCGCA--ATGAACTCAAATGGAGTGAAGCT 1458
BSNT_04202___ 1470 GCTTTACCGGCTTCAAAAGT----AG 1491
|| .||.|||||||..|||| |
BL00352___ara 1459 GC-ATATCGGCTTCGCAAGTTTTAA- 1482
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