Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04201 and BL00351
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence dna-align/BSNT_04201___araB.1.5803.seq
# -bsequence dna-align/BL00351___araB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04201___araB-BL00351___araB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04201___araB-BL00351___araB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04201___araB
# 2: BL00351___araB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1764
# Identity: 1210/1764 (68.6%)
# Similarity: 1210/1764 (68.6%)
# Gaps: 186/1764 (10.5%)
# Score: 4057.5
#
#
#=======================================
BSNT_04201___ 1 ATGGCTTACACAATAGGGGTTGATTTTGGAACTTTATCAGGAAGAGCAGT 50
||.|||||..|.|||||
BL00351___ara 1 ---------------------------------TTGTCAGGGCGTGCAGT 17
BSNT_04201___ 51 GCTCGTTCATGTCCAAACAGGGGAGGAACTTGCGGCTGCTGTAAAAGAAT 100
.|||||..||||||..|||||.||||||.|.|||.|.|||||.|||||.|
BL00351___ara 18 TCTCGTCGATGTCCGGACAGGTGAGGAAATCGCGACAGCTGTCAAAGAGT 67
BSNT_04201___ 101 ACCGGCATGCTGTCATTGATACCG------TCC-TTCCAAAAACGGGTCA 143
||..|||.|..||.|| |.|||| ||| .||..|||.||
BL00351___ara 68 ACACGCACGGGGTGAT--AGACCGGGAGCTTCCGGTCTCAAAGCG----- 110
BSNT_04201___ 144 AAAGCTGCCGCGTGACTGGGCGCTGCAGCACCCTGCTGATTACCTCGAAG 193
||||||.|||.|.|||||||||||.|||||.||.||.||||||.|.||||
BL00351___ara 111 AAAGCTTCCGAGAGACTGGGCGCTCCAGCATCCGGCCGATTACATTGAAG 160
BSNT_04201___ 194 TCTTGGAAACAACCATTCC--GTCTTTACTCGAACAG--ACGGGCGTTGA 239
|..||||...|||.||||| |.|||| |..||||| |...||| ||
BL00351___ara 161 TGCTGGAGGAAACGATTCCGAGCCTTT--TGAAACAGTCAAAAGCG--GA 206
BSNT_04201___ 240 ACCGAAAGACATTATCGGGATTGGAATTGATTTCACGGCATGTACGATCC 289
.||||||||.||.|||||.||.|||||.|||||||||||.||.|||||..
BL00351___ara 207 TCCGAAAGAAATCATCGGAATCGGAATCGATTTCACGGCTTGCACGATTT 256
BSNT_04201___ 290 TTCCTATTGAC-AGCAGCGGGCAGCCGTTATGCATGCTGCCTGAATATGA 338
|.||..||||| || |.||||...||..|.||.|||..|...||.||||.
BL00351___ara 257 TGCCCGTTGACGAG-AACGGGACTCCTCTTTGTATGAGGGAAGAGTATGC 305
BSNT_04201___ 339 AGAGGAGCCGCACAGCTATGTGAAGCTCTGGAAGCATCATGCGGCCCAAA 388
...|||.||||||||||||||||||||.||||||||.|||||.||.||..
BL00351___ara 306 GTCGGAACCGCACAGCTATGTGAAGCTTTGGAAGCACCATGCTGCACAGG 355
BSNT_04201___ 389 AACATGCTGATCGGCTCAATCAAATCGCGGAAG-AAGAAGGGAAGGCTTT 437
|.||.||..||||..|.|||||||||||||||| |||||..||| .||||
BL00351___ara 356 AGCAGGCGAATCGCTTAAATCAAATCGCGGAAGAAAGAAATGAA-CCTTT 404
BSNT_04201___ 438 TTT----ACAGCGGTACGGAGGAAAAATTTCATCAGAATGGATGATTCCA 483
|.| ||| |||||.||.||||||||.||.||.|||.|..|||||
BL00351___ara 405 TCTTCAAACA----TACGGCGGGAAAATTTCTTCCGAGTGGCTCGTTCCA 450
BSNT_04201___ 484 AAGGTCATGCAAATTGCCGAGGAAGCGCCTCACATTTATGAAGCGGCTGA 533
||.||.||||||||.||.||.|||||||||.||||||||||.||.||.|
BL00351___ara 451 AAAGTGATGCAAATCGCGGAAGAAGCGCCTGACATTTATGATGCCGCAG- 499
BSNT_04201___ 534 CCG-GATCATCGAGGCTGCGGACTGGATCGTGTACCAGCTGTGCGGCTCG 582
||| ||||||.||.||.||.|||||||||||.||...|||||||||..|.
BL00351___ara 500 CCGAGATCATGGAAGCGGCCGACTGGATCGTCTATATGCTGTGCGGAACC 549
BSNT_04201___ 583 CTCAAGCGAAGCAATTGTACCGCAGGGTATAAAGCGATGTGGAGTGAAAA 632
...|||||.|.||||||.||.||.||.|||||||||||.|||| ..||.|
BL00351___ara 550 AGAAAGCGCAACAATTGCACAGCGGGTTATAAAGCGATTTGGA-ACAATA 598
BSNT_04201___ 633 AGCG-GGGTATCCGTCAGATGATTTCTT--------------------TG 661
||.| ||.|||||.||.||.|||||||| ||
BL00351___ara 599 AGAGCGGCTATCCTTCCGACGATTTCTTCGCAAGCCTGCATCCGAAGCTG 648
BSNT_04201___ 662 AGAAATTAAATCCTTCAATGAAAACGATTACAAAGGACAAATTGGCAGGT 711
|.|||| |||.|||....||||| |.||..||||
BL00351___ara 649 AAAAAT---ATCGTTCGGGAAAAAC--TAACGGAGGA------------- 680
BSNT_04201___ 712 TCTATTCATTCGGTAGGAGAAAAAGCCGGCAGTCTGACTGAAAAAATGGC 761
||||.||||.|||||.||||||||.|||.|.|||||||||.|||||||
BL00351___ara 681 --TATTTATTCTGTAGGCGAAAAAGCGGGCGGACTGACTGAAGAAATGGC 728
BSNT_04201___ 762 ----AAAGCTGACAGGGCTTCTCCCGGGAACGGCTGTTGCGGTTGCCAAT 807
||| |||||||||||..|.||.|||||.||.||.||.||.|||
BL00351___ara 729 CGGGAAA----ACAGGGCTTCTGGCAGGTACGGCGGTCGCTGTCGCAAAT 774
BSNT_04201___ 808 GTGGACGCTCATGTTTCCGTACCGGCGGTTGGCATTACAGAGCCAGGGAA 857
||.||.||||||||.||.||.||||||||.|||||.||||||||.||.||
BL00351___ara 775 GTTGATGCTCATGTGTCGGTTCCGGCGGTCGGCATCACAGAGCCGGGCAA 824
BSNT_04201___ 858 AATGCTGATGATTATGGGAACCTCAACGTGCCATGTTCTTCTTGGTGAAG 907
.|||||||||||.||||||||.||.||.||.|||.|.||.||.||.||.|
BL00351___ara 825 GATGCTGATGATCATGGGAACGTCTACCTGTCATATGCTGCTCGGCGAGG 874
BSNT_04201___ 908 AGGTGCA-TATCGTTCCAGGTATGTGCGGCGTTGTGGACAACGGAATTCT 956
|.|| || .||.||.||.||.|||||||||||.||.||..||||.|||||
BL00351___ara 875 ATGT-CAGGATGGTGCCGGGAATGTGCGGCGTCGTTGAAGACGGGATTCT 923
BSNT_04201___ 957 CCCGGGCTATGCGGGATATGAAGCCGGGCAGTCCTGTGTCGGCGATCATT 1006
.||||||||||..||.||||||||.||.||.||.||.||.|||||.||||
BL00351___ara 924 GCCGGGCTATGTCGGCTATGAAGCGGGCCAATCGTGCGTTGGCGACCATT 973
BSNT_04201___ 1007 TTGACTGGTTTGTGA--AAACA-TGTGTCCCGCCAGCTTAT------CAA 1047
||.|.||| .||| .|||| |.|||.||...|||.||| .||
BL00351___ara 974 TTCATTGG---CTGATTCAACACTTTGTTCCAGAAGCGTATTTGAAAGAA 1020
BSNT_04201___ 1048 GAGGAAGC--AAAGGAAAAAAACATTGGCGTTCATGAGCTGCTGAGTGAG 1095
|..||||| ||.|| |||..|.||.|.||.||||||..|.|.
BL00351___ara 1021 GCTGAAGCCGAAGGG--------ATTTCCATTTACGAACTGCTGTCTCAA 1062
BSNT_04201___ 1096 AAAGCAAACCATCAAGCGCCA----GGTGAAAGCGGCCTGCTTGCTTTAG 1141
||.| ||..||..|.||| |||||||||||..|||||||.||.|
BL00351___ara 1063 AAGG----CCGGCAGTCTCCAAATCGGTGAAAGCGGTTTGCTTGCATTGG 1108
BSNT_04201___ 1142 ATTGGTGGAATGGAAACCGTTCAACTCTTGTTGATGCAGATTTAACAGGG 1191
||||||||||.||||||||||||||.||.||||||||.|||.|.||.||.
BL00351___ara 1109 ATTGGTGGAACGGAAACCGTTCAACACTCGTTGATGCCGATCTGACGGGA 1158
BSNT_04201___ 1192 ATGCTGCTTGGAATGACACTGCTG--ACGAAGCCTGAAGAGATTTATAGA 1239
||||||||.||.|||||.|| || ||.||||||||||||||.||..|.
BL00351___ara 1159 ATGCTGCTCGGTATGACCCT--TGCCACTAAGCCTGAAGAGATATACCGT 1206
BSNT_04201___ 1240 GCGTTAGTTGAAGCGACAGCTTACGGAACCCGGATGATTATCGAAACATT 1289
||.||.|||||||||||.||.|||||.||..||||.|||||.|||||.||
BL00351___ara 1207 GCATTGGTTGAAGCGACTGCCTACGGGACGAGGATCATTATTGAAACGTT 1256
BSNT_04201___ 1290 CAAAGAAAGCGGTGTTCCGATTGAGGAACTATACGCAGCGGGCGGAATAG 1339
||.|.|||||||.||.|||||.|||||.||.||.||.||.||.|||||.|
BL00351___ara 1257 CAGACAAAGCGGCGTGCCGATCGAGGAGCTGTATGCCGCAGGAGGAATCG 1306
BSNT_04201___ 1340 CTGAGAAAAACCCGTTTGTCATGCAGATTTATGCGGATGTGACAAACATG 1389
|.||.|||||.||||||.||||||||.||||.||||||||.||.||||||
BL00351___ara 1307 CCGAAAAAAATCCGTTTATCATGCAGGTTTACGCGGATGTCACCAACATG 1356
BSNT_04201___ 1390 GACATTAAAATCTCTGGTTCACCGCAAGCCCCAGCCTTAGGATCTGCCAT 1439
||.||.|||||.||.||.||.|||||.||.||.||.|||||.||.||.||
BL00351___ara 1357 GAAATCAAAATTTCCGGATCTCCGCAGGCGCCGGCTTTAGGTTCAGCGAT 1406
BSNT_04201___ 1440 TTTCGGTGCGCTTGCAGCAGGCAAAGAA--AAAGGCGGCTACGATGACAT 1487
.|||||.|||||.||.||.|| |||.| ||.|||||.|||||..|.||
BL00351___ara 1407 ATTCGGAGCGCTCGCGGCCGG--AAGCATGAACGGCGGTTACGACCATAT 1454
BSNT_04201___ 1488 CAAAGAGGCAGCGGCGAACATGGGAAAACTGAAAGATATAACTTATACGC 1537
|.||||.||||..||..|.|||||.||..|.||.||||.|||.||.|..|
BL00351___ara 1455 CGAAGAAGCAGTCGCACATATGGGCAAGATCAAGGATAAAACGTACAAAC 1504
BSNT_04201___ 1538 CAAATGCCGAAAACG---CCGCGGTTTAT--GAAAAATTGTACGCTGAAT 1582
|||.|.|.||||||| || |||| ||..|..|.||.||.||||
BL00351___ara 1505 CAATTCCTGAAAACGTTTCC-----TTATACGATCAGCTTTATGCGGAAT 1549
BSNT_04201___ 1583 ATAAAGAGCTGGTT-CA-TTATTTCGGAAAAGAAAACCATGTCATGAAGC 1630
||||.||||| || || .||.||||||||..|||||.||||.|||||.|
BL00351___ara 1550 ATAAGGAGCT--TTACACGTACTTCGGAAAGCAAAACAATGTGATGAAAC 1597
BSNT_04201___ 1631 GTCTGAAAACGATCAAAAATCTTCAAT---TTTCATCTG---CCGCCAAA 1674
|.||.||||...|.|||||..|.||.| ||...|||| |||..|||
BL00351___ara 1598 GCCTTAAAAAATTGAAAAACATCCAGTCCCTTAGTTCTGACACCGGTAAA 1647
BSNT_04201___ 1675 AAGAATTGA----- 1683
..|| ||.
BL00351___ara 1648 GCGA--TGGCTTAG 1659
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