Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04195 and BL00346

See Amino acid alignment / Visit BSNT_04195 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:17
# Commandline: needle
#    -asequence dna-align/BSNT_04195___araQ.1.5803.seq
#    -bsequence dna-align/BL00346___araQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04195___araQ-BL00346___araQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04195___araQ-BL00346___araQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04195___araQ
# 2: BL00346___araQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 882
# Identity:     626/882 (71.0%)
# Similarity:   626/882 (71.0%)
# Gaps:          75/882 ( 8.5%)
# Score: 2159.5
# 
#
#=======================================

BSNT_04195___      1 ATG-----TTGCGGCACAGTCCTCAGTTCAGCGTTTACAGAATTGCG---     42
                     |||     |..|||   ||.|||||           ||   ||||||   
BL00346___ara      1 ATGCGTCCTGCCGG---AGGCCTCA-----------AC---ATTGCGAAA     33

BSNT_04195___     43 CTAACCCTGTTTTT-----------TATTATGCTGAGCCTATTGTATCTT     81
                     .||.|.||||||.|           |||||     |||.|.||||.|.|.
BL00346___ara     34 GTAGCTCTGTTTCTGCTGTTTGCGATATTA-----AGCTTTTTGTTTGTG     78

BSNT_04195___     82 TTTCCGATTTTCTGTTTGCTTTTA---GGATCATTAAAGCCCTCATCTGA    128
                     ||||||.|.|||||   .|||.||   ||.||..|.|||||.||.||.||
BL00346___ara     79 TTTCCGCTCTTCTG---CCTTGTACTCGGCTCGCTCAAGCCATCTTCGGA    125

BSNT_04195___    129 GCTTTTGCGTGTGGGGCTCAATCTCGACA-TTGA-TCCTAAAGTAATGAG    176
                     ..|..||||..|.||.||.|||.|  |.| .||| .|||.||.|..||||
BL00346___ara    126 ATTGCTGCGCTTCGGCCTGAATTT--AAAGCTGAGCCCTGAAATCCTGAG    173

BSNT_04195___    177 TCTTGATAATTATACATTTC-TGTTTAACGGCGGAAGCATTTATTTCAAA    225
                     .|||||.|||||.|| ||.| ||||||||||.||.|||||||||||..||
BL00346___ara    174 CCTTGACAATTACAC-TTACTTGTTTAACGGAGGCAGCATTTATTTTCAA    222

BSNT_04195___    226 TGGTTTTTTAACAGTCTTG-TACTTGGGCTTTTCACAACCATGCTCACCC    274
                     |||||||..||||| |||| |.||.|.|.|..|..|.|||.||||.||.|
BL00346___ara    223 TGGTTTTCGAACAG-CTTGATTCTCGTGGTGATATCCACCGTGCTGACGC    271

BSNT_04195___    275 TGTTTTTTTCTTCGATGATCGGGTACGGGCTTGCGGTTTATGATTTTAAG    324
                     |.||.||||||||.|||.||||.|||||||||||.||.||.||.|||||.
BL00346___ara    272 TCTTGTTTTCTTCAATGGTCGGATACGGGCTTGCCGTCTACGACTTTAAA    321

BSNT_04195___    325 GGCAGAAATATCATCTTTGTTCTT----GTGCTGATTATCATGATGGTTC    370
                     ||.|.||||.||    ||||||.|    |||||..|.|||||||||||.|
BL00346___ara    322 GGAAAAAATCTC----TTGTTCGTAGCCGTGCTCCTGATCATGATGGTGC    367

BSNT_04195___    371 CGCTGGAAGTGATGATGCTTCCTCTGTTTAAGCTTACCGTCGGACTGCAC    420
                     ||.|.|||.|..|.|||||.|||.|||||||..|.||.||     |.|.|
BL00346___ara    368 CGATCGAAATTCTCATGCTGCCTTTGTTTAAAATGACGGT-----TTCTC    412

BSNT_04195___    421 TTGA-----TCGATTCATATACAGGTGTCATATTGCCGTTTATCGTTTCA    465
                     ||.|     ||||..||||..|.|||||.||..|||||||||||||.||.
BL00346___ara    413 TTCATATTGTCGACACATACGCCGGTGTGATCCTGCCGTTTATCGTCTCG    462

BSNT_04195___    466 CCTGTTGCCGTTTTCTTTTTTAGGCAATATGCTCTTGGCCTTCCAAGAGA    515
                     |||||.|||||.||.||.||.||.||.|||||.||.|||||.||.|||||
BL00346___ara    463 CCTGTAGCCGTGTTTTTCTTCAGACAGTATGCGCTCGGCCTGCCGAGAGA    512

BSNT_04195___    516 TCTGCTGGACTCTGCAAGGATGGACGGCTGTACGGAATTCGGCATCTTTT    565
                     |.||||.||.||.||.||.|||||||||||.||.||.||||||||.|..|
BL00346___ara    513 TTTGCTTGATTCCGCGAGAATGGACGGCTGCACAGAGTTCGGCATTTACT    562

BSNT_04195___    566 TCAGGATTATGGCACCGCTGATGAAACCGGCTTTCGGTGCCATGATTATC    615
                     |||||||.|||||.||..|||||||.|||||.||.||.||.|||||.||.
BL00346___ara    563 TCAGGATCATGGCGCCCTTGATGAAGCCGGCATTTGGAGCGATGATCATT    612

BSNT_04195___    616 CTTCAGTCCTTAAACAGCTGGAACAACTTCTTGTGGCCGCTGATTGTGCT    665
                     |||||.||||||||||||||||||||||||||.|||||||||||.||..|
BL00346___ara    613 CTTCAATCCTTAAACAGCTGGAACAACTTCTTATGGCCGCTGATCGTTTT    662

BSNT_04195___    666 TCGGTCGAAAGAAATGTTTACGCTTCCAATAGGGCTGTCCAGC-TTGCTG    714
                     .||.||||||||||||||||||||.|||||.||.|||||| || |||||.
BL00346___ara    663 GCGATCGAAAGAAATGTTTACGCTCCCAATCGGACTGTCC-GCTTTGCTC    711

BSNT_04195___    715 AGCCCTTATGGCAACAACTATGACATGCTTATATCCGGCTCAGTATTTGC    764
                     ||.||.||.||.|||||.|||||||||.|.||.||.||.||.||..|.||
BL00346___ara    712 AGTCCGTACGGGAACAATTATGACATGTTGATTTCGGGTTCTGTGCTGGC    761

BSNT_04195___    765 GATTTTGCCGGTGATTATCATTTTCTTGTTTTTCCAAAAGTACTTTATCT    814
                     ||||.||||.||||||.||||.|||.||||.|||||.|||||||||||.|
BL00346___ara    762 GATTCTGCCCGTGATTCTCATCTTCCTGTTCTTCCAGAAGTACTTTATAT    811

BSNT_04195___    815 CCGGCCTGACGGTAGGGGGAGTCAAAGGTTAA    846
                     |.||..||||||..||.|||.|||||||.|.|
BL00346___ara    812 CAGGTTTGACGGCGGGCGGAATCAAAGGCTGA    843


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04195 and BL00346

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
