Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04193 and BL00344
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_04193___cstA.1.5803.seq
# -bsequence dna-align/BL00344___cstA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04193___cstA-BL00344___cstA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04193___cstA-BL00344___cstA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04193___cstA
# 2: BL00344___cstA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1825
# Identity: 1423/1825 (78.0%)
# Similarity: 1423/1825 (78.0%)
# Gaps: 56/1825 ( 3.1%)
# Score: 5496.0
#
#
#=======================================
BSNT_04193___ 1 ATGAATGCGGTTACAATTGTGATAGCATCAATGTGTATTTTGGCTATTGC 50
||||||||..|.|||||||||||.||.||.||.|||||||||||.||.||
BL00344___cst 1 ATGAATGCAATAACAATTGTGATCGCTTCCATCTGTATTTTGGCGATCGC 50
BSNT_04193___ 51 CTATCGTTTATACGGAACATTTATGATGGTGAAGGTTCTCAAAGTAAATG 100
|||||||||.|||||||||||||||||||||||.||..|.||.||..|||
BL00344___cst 51 CTATCGTTTGTACGGAACATTTATGATGGTGAAAGTGTTGAAGGTTGATG 100
BSNT_04193___ 101 ATGACAAGCCGACACCTGCTCACGTGCTTGAG---GATGGGAAAGACTAT 147
|.|||||||||||.|||||.|| .|||.|| ||.||.|||||.|||
BL00344___cst 101 ACGACAAGCCGACTCCTGCCCA---TCTTCAGAAAGACGGCAAAGATTAT 147
BSNT_04193___ 148 GTGCCTACAAATAAATGGGTTTCGTTCGGCCACCATTTTGCCGCGATCGC 197
|||||.||.||.||||||||.||.|||||||||||.|||||.||.|||||
BL00344___cst 148 GTGCCGACGAACAAATGGGTGTCTTTCGGCCACCACTTTGCGGCCATCGC 197
BSNT_04193___ 198 AGCGGCCGGACCGTTGGTCGGACCAATTCTGGCGGCGCAGTTTGGCTATT 247
|||.||.||.|||.|.|||||.||.||..|||||||||||||.|||||.|
BL00344___cst 198 AGCCGCGGGGCCGCTTGTCGGGCCGATCTTGGCGGCGCAGTTCGGCTACT 247
BSNT_04193___ 248 TGCCGGGATTATTGTGGCTGTTAATCGGGGCGGTAATTGGGGGAGCCGTC 297
|||||||..|.||||||||..|.|||||.|||||.||.|||||.|||||.
BL00344___cst 248 TGCCGGGGCTGTTGTGGCTCCTGATCGGAGCGGTCATCGGGGGCGCCGTG 297
BSNT_04193___ 298 CATGATATTGTGGTGTTGTTTGCATCGATGCACAAAAACGGAAAATCGCT 347
|||||||||||.||.||.|||||.|||||||..|..||.|||||.|||||
BL00344___cst 298 CATGATATTGTTGTTTTATTTGCGTCGATGCGGAGGAAGGGAAAGTCGCT 347
BSNT_04193___ 348 GTCGGAAGTGGCGAAGGCTGAGCTTGGCCCTGTTGCAGGATTTTGTACAG 397
.||.|||||||||||.|..|||||.||.||||||||.||||||||.||.|
BL00344___cst 348 TTCAGAAGTGGCGAAAGAAGAGCTCGGGCCTGTTGCGGGATTTTGCACGG 397
BSNT_04193___ 398 GACTGTCCATGCTGTTTATCATCACGATCACAATGGCGGGCCTGTCGATG 447
|.||..|.|||||||||||.||.||.|||||.||||||||.|||||||||
BL00344___cst 398 GGCTTGCGATGCTGTTTATTATTACAATCACGATGGCGGGGCTGTCGATG 447
BSNT_04193___ 448 GTTGT-CTTGCATGCGCTTGAACGTAATCCATGGGGAACATTTGCGGTAG 496
||||| ||| ||||||||||||||.|||||.|||||.||.||.||.||.|
BL00344___cst 448 GTTGTGCTT-CATGCGCTTGAACGCAATCCGTGGGGGACGTTCGCCGTTG 496
BSNT_04193___ 497 GGATTACGATACCGATTGCGATGGGTGTGGGCTTATTTTATAAGAAAACG 546
.||||||.||.|||||.||||||||.||.||||||||||||||.||.||.
BL00344___cst 497 CGATTACAATTCCGATCGCGATGGGGGTCGGCTTATTTTATAAAAAGACA 546
BSNT_04193___ 547 GGAAATTTAAAGCTCGCTTCAACGGTCGGCTTTCTCTTTTTAATGGCAGG 596
||.||.|||||..|.||.||.||.|.|||.|||.|.||..|.|||||.||
BL00344___cst 547 GGCAACTTAAAATTAGCGTCTACCGGCGGATTTATTTTGCTGATGGCCGG 596
BSNT_04193___ 597 AGTCTTTATCGG----TCCATGGGTACAGACTACAGCGCTTGGTGACTTT 642
.|||||.||||| ||||| |.|||| .||..|||||||.|||...
BL00344___cst 597 TGTCTTCATCGGGCCCTCCAT---TGCAGA-GACGCCGCTTGGAGACGCC 642
BSNT_04193___ 643 TTAACGCTAGATACGAAAACGCTTGCAATCGCGCTTCCTGTTTACGCGTT 692
||.|||||.|||||||||||||||||..||||.||||||||.||.||.||
BL00344___cst 643 TTGACGCTCGATACGAAAACGCTTGCTGTCGCACTTCCTGTCTATGCATT 692
BSNT_04193___ 693 TTTTGCGGCTGCGCTTCCCGTTTGGCTGCTTCTGGCTCCGCGTGATTATT 742
||||||.||.|||||.||.||.||||||||.||.||.|||||.|||||||
BL00344___cst 693 TTTTGCAGCGGCGCTGCCTGTATGGCTGCTGCTCGCACCGCGCGATTATT 742
BSNT_04193___ 743 TAAGCAGCTTTATGAAAATCGGTGTTTTTATCGCTTTGATTGTTGGTGTG 792
|.||||||||||||||||||||.||.||||||||||||||||..||.||.
BL00344___cst 743 TGAGCAGCTTTATGAAAATCGGGGTGTTTATCGCTTTGATTGCCGGGGTT 792
BSNT_04193___ 793 TTTGTCGTCAATCCGTCCATTCCGTTCCCTGCGTTTACAGAATTCGTAAA 842
||.||.|||||||||.|.||||||||.||.||||||||.||.||| |.
BL00344___cst 793 TTCGTTGTCAATCCGGCGATTCCGTTTCCGGCGTTTACCGAGTTC---AC 839
BSNT_04193___ 843 AGGCGGCGGG---CCGGTGCTGGCAGGACCTGTCTGGCCGTTCATCTCAA 889
.|||||.||| ||.||...|.|.||.||.||||||||||||||.||||
BL00344___cst 840 GGGCGGAGGGGGACCTGTTTCGCCTGGTCCGGTCTGGCCGTTCATTTCAA 889
BSNT_04193___ 890 TAACCATCGCCTGCGGGGCGATCTCTGGGTTCCATGCCTTTGTCGGTTCA 939
|.||.|||||||||||.|||||.||.||.||||||||.||||||||||||
BL00344___cst 890 TTACGATCGCCTGCGGTGCGATTTCCGGTTTCCATGCGTTTGTCGGTTCA 939
BSNT_04193___ 940 GGAACGACACCGAAAATGCTGAATAAATGGAGTGATATGAA----GCCGG 985
||.|||||.|||||.|||||..|.||.|||||.||.||||| |.|||
BL00344___cst 940 GGCACGACGCCGAAGATGCTTGACAAGTGGAGCGACATGAAATTCGTCGG 989
BSNT_04193___ 986 TTGCGTTTGGCGCAATGCTTGTTGAGTGTCTTGTTGGCATCATGGCGCTG 1035
.||.||.||.|||||.||||||||||||||.|||||||||||..|.
BL00344___cst 990 ----CTTCGGAGCGATGCTCGTTGAGTGTCTTGTCGGCATCATGGCTTTA 1035
BSNT_04193___ 1036 ATTGCAGCGACCGCTTTACAGCCTGCTGATTACTTTGCGATTAACAGCAC 1085
||.||.||.||.||.||.|||||.|..|||||.|||||.||.|||||..|
BL00344___cst 1036 ATCGCGGCAACGGCGTTGCAGCCGGGCGATTATTTTGCCATCAACAGTTC 1085
BSNT_04193___ 1086 GCCTGAGGTTTTCCGTACGCTTGGCATGAATGTCATACATTTGCCTGAAT 1135
|||.||.||.||.||.||||||||||||||||||.|.|||.||||||||.
BL00344___cst 1086 GCCAGAAGTCTTTCGGACGCTTGGCATGAATGTCGTCCATCTGCCTGAAC 1135
BSNT_04193___ 1136 TGAGCAGGGAAATCGGTTTGGA-CTTAGAAGGAAGAACAGGGGGAGCCGT 1184
|.|||.|.|||||||||.|.|| ||| ||||||||||||||.|||||.||
BL00344___cst 1136 TCAGCCGCGAAATCGGTCTCGATCTT-GAAGGAAGAACAGGCGGAGCTGT 1184
BSNT_04193___ 1185 TACGCTTGCGGTGGGGATGACTTATATTTTTACCGGA-ATGCCGTTTTTC 1233
|||.|||||.||.||.|||.||||||||||.| |||| ||.|||||||||
BL00344___cst 1185 TACCCTTGCCGTCGGCATGGCTTATATTTTCA-CGGATATTCCGTTTTTC 1233
BSNT_04193___ 1234 AGCCATTTGGCCTCATACTTTTTCCAATTTGTCATTATGTTTGAAGCGGT 1283
||||||||||||||.||||||||||||||||||||.|||||||||||.||
BL00344___cst 1234 AGCCATTTGGCCTCTTACTTTTTCCAATTTGTCATCATGTTTGAAGCTGT 1283
BSNT_04193___ 1284 CTTTATTTTAACAGCGATTGACGCCGGCACACGCGTTGCCCGTTATTTGA 1333
||||||||||||.|||||.||.|||||.|||.|.||.||.||||||||||
BL00344___cst 1284 CTTTATTTTAACGGCGATCGATGCCGGTACAAGGGTGGCGCGTTATTTGA 1333
BSNT_04193___ 1334 TCCAGGATTTCTTCGGGGAGGTGTATAAACCGCTGAAGAAAACAGACTGG 1383
|.||.||.||.||||||||.|||||.|||||||||||.|||||.||||||
BL00344___cst 1334 TTCAAGACTTTTTCGGGGAAGTGTACAAACCGCTGAAAAAAACGGACTGG 1383
BSNT_04193___ 1384 ATTCCGGGCTCTGTATTTGCCAGCGCGCTTGCCTGTTTGATGTGGGGGTA 1433
.|||||||.||.||....||.|||||.|||||||||||.||||||||.||
BL00344___cst 1384 CTTCCGGGTTCGGTCGCAGCGAGCGCCCTTGCCTGTTTCATGTGGGGATA 1433
BSNT_04193___ 1434 CTTGCTGTATTCAGGAGATATCGGTTCCATTTGGGCGCTGTTCGGCGTTT 1483
.||||||||.|||||.||||||.|.||.||||||||||||||.|||||.|
BL00344___cst 1434 TTTGCTGTACTCAGGCGATATCAGCTCGATTTGGGCGCTGTTTGGCGTAT 1483
BSNT_04193___ 1484 CTAATCAGCTGATGGCTTCAGTGGGGCTGATTATCGGAGCGACCATCGTG 1533
|.||.|||||||||||.||.||.||..|.||||||||||||||..||.|.
BL00344___cst 1484 CCAACCAGCTGATGGCATCCGTCGGTTTAATTATCGGAGCGACGGTCATT 1533
BSNT_04193___ 1534 CTGAAAATCGCTGATAAACGCCGGTACATTCTGACTTGCCTTATCCCGCT 1583
.|.|||||.||.||.|||||.||.||.||.|||||.||.||.||.|||||
BL00344___cst 1534 TTAAAAATTGCGGACAAACGGCGTTATATGCTGACATGTCTCATTCCGCT 1583
BSNT_04193___ 1584 TGCCTATTTATATGTCACTGTCAATTATGCGGGCTATTGGATGGTGCGCA 1633
.||.|||||.|||||.||.|||||.||||||||.||.||||||.|....|
BL00344___cst 1584 CGCTTATTTGTATGTGACGGTCAACTATGCGGGATACTGGATGATCAAAA 1633
BSNT_04193___ 1634 ATGTGTATCTCAATCCTGAAGCAGCAGGATATAGTGTATTGAATGGCGTA 1683
|.||.|||.|.|||.|.|||||.||.||.|..||.||.||.||.|||.|.
BL00344___cst 1634 ACGTTTATTTTAATGCGGAAGCTGCCGGTTTCAGCGTTTTAAACGGCATT 1683
BSNT_04193___ 1684 TTATCTATCATCATGCTGGTGTTAGG-CT--TCATCATTATTGTGGCGGC 1730
|||||.|||||.|||||.|||||.|| || |.|||| ||||.||
BL00344___cst 1684 TTATCGATCATTATGCTTGTGTTGGGACTTGTGATCA------TGGCTGC 1727
BSNT_04193___ 1731 TG---TGAAAAAATGGGCGCAGATGTGGAAAGATCCGAGC-TTAAGGATG 1776
.| |.|||||||||.||.||||.|||...|||||| || ||..|||||
BL00344___cst 1728 AGCCATTAAAAAATGGACGGAGATTTGGCGCGATCCG-GCATTGCGGATG 1776
BSNT_04193___ 1777 GAAGCATCTATACCGGTCTAG---- 1797
||..|.||||||| ||.|
BL00344___cst 1777 GAGCCTTCTATAC----CTGGATGA 1797
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