Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04181 and BL00342
See
Amino acid alignment /
Visit
BSNT_04181 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_04181___ysgA.1.5803.seq
# -bsequence dna-align/BL00342___ysgA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04181___ysgA-BL00342___ysgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04181___ysgA-BL00342___ysgA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04181___ysgA
# 2: BL00342___ysgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 785
# Identity: 523/785 (66.6%)
# Similarity: 523/785 (66.6%)
# Gaps: 76/785 ( 9.7%)
# Score: 1605.0
#
#
#=======================================
BSNT_04181___ 1 GTGAAACAAATAGAATCGGCAAAAAACCAAAAAGTGAAGGATTGGAAAAA 50
.||||||.|||.|||||.||.|||||.||||||||||||||.||||||||
BL00342___ysg 1 TTGAAACGAATTGAATCAGCCAAAAATCAAAAAGTGAAGGACTGGAAAAA 50
BSNT_04181___ 51 GCTTCACACAAAAAAAGAACGAACAAAAACAAATACATTTC-TGATAGAG 99
.|||||..||||||||||.||.||||||||.||||| |||| |.|||||.
BL00342___ysg 51 ACTTCATGCAAAAAAAGAGCGGACAAAAACGAATAC-TTTCTTAATAGAA 99
BSNT_04181___ 100 GGAGAACACCTCGTTGAAGAGGCGTTGAAAAGCCCGGGCATTGTGAAAGA 149
||.||.||.||||||||.||.|||.||||.|..|||||..||||||||||
BL00342___ysg 100 GGCGAGCATCTCGTTGAGGAAGCGCTGAAGACACCGGGTGTTGTGAAAGA 149
BSNT_04181___ 150 AATCCTTGTAAAGGATGAAACGAGGA-TTCCTTCAGATCT------TGAG 192
||||.|.||....||.||| |.||| |||| |.|.|.| ||||
BL00342___ysg 150 AATCATGGTCGCAGACGAA--GCGGACTTCC--CGGCTATGATTGATGAG 195
BSNT_04181___ 193 ACTGGTATCCAGTGCTATATGCTGAGTGAAGATGCGTTTTCAGCTGTGAC 242
.|||.|..|| |||||.|..||||.|..|||||.||||||||..|..|
BL00342___ysg 196 TCTGTTGCCC---GCTATGTTTTGAGCGCCGATGCTTTTTCAGCGATTGC 242
BSNT_04181___ 243 TGAAACCGAAACGCCGCAGCAGATTGCCGCTGTGTGCCATATGCCTGAAG 292
.|||||.||.|||||.|||..|.|.||||||||.||||..|||||.|
BL00342___ysg 243 CGAAACGGAGACGCCTCAGGCGGTCGCCGCTGTATGCCGAATGCCCG--- 289
BSNT_04181___ 293 AAAAGCTGG-------CAACGGCACG-CAAGGTGCTGCTGATTGACGCTG 334
||||| || ||| .||| .|||.|||||||...|||.||||
BL00342___ysg 290 -AAAGC-GGACCTTTTCAA---TACGAAAAGCTGCTGCTAGCTGATGCTG 334
BSNT_04181___ 335 TTCAAGATCCGGGAAACCTTGGCACAATGATTCGAACGGCTGATGCGGCC 384
|.||.||.|||||.||..|.||.||.||.||.||.|||||.||.|||||.
BL00342___ysg 335 TGCAGGACCCGGGCAATTTAGGGACGATCATCCGGACGGCAGACGCGGCG 384
BSNT_04181___ 385 GGTTTGGATGCGGTTGTACTCGGTGACGGCACGGCGGACGCCTT-TAACG 433
||..|.|||||.|||||..||||..|.||.||.|..||| |||| .||.|
BL00342___ysg 385 GGGATCGATGCCGTTGTTATCGGACAAGGGACTGTCGAC-CCTTACAATG 433
BSNT_04181___ 434 GAAAAACACTGCGATCTGCTCAAGGATCTCACTTCCATATTCCTGTTGTG 483
..|||||.||..|.||.||||||||.||.||.||.||.||.||..||.|
BL00342___ysg 434 CCAAAACGCTCAGGTCGGCTCAAGGCTCGCATTTTCACATCCCGATTTT- 482
BSNT_04181___ 484 AGAAGAAACCTGCCTTCATATGTGGACGAATTGAAG-GCAGAGGGCGTAA 532
||.|..|..||.||||.|..|| ||||||| ||.||.|| |.||
BL00342___ysg 483 --AAAACGCGAGCTTTCAGAGCTG-----ATTGAAGAGCTGAAGG-GAAA 524
BSNT_04181___ 533 AA--------GTATACGGCACGGCGCTGCAAAACGGAGCGCCTTACCA-- 572
|| ||.||||||||.|||||||| |.|.|||.|.|||
BL00342___ysg 525 AAGCGTCCCGGTTTACGGCACAGCGCTGCA-----GGGTGCCGTGCCATT 569
BSNT_04181___ 573 ---------GGAGATTCCTCAGTCTGAATCCTTTGCGCTCATTG-TAGGA 612
|||| |.|||..|.||.|||||||| |||| |.|||
BL00342___ysg 570 TAGAGAAGCGGAG------CCGTCGCAGTCGTTTGCGCT-ATTGATCGGA 612
BSNT_04181___ 613 AATGAAGGTGCAGGGGTGGATGCTGCATTGCTGGAAAAAACGGATTTGAA 662
||.|||||..|.|||||.|||.|.||..|.||.|.|.|.||.||....||
BL00342___ysg 613 AACGAAGGATCTGGGGTCGATCCGGCCCTCCTCGCACAGACCGACCAAAA 662
BSNT_04181___ 663 CCTGTACGTGCCGCTTTACGGACAGGCTGAATCACTAAACGTTGCGGTTG 712
.||||||||.|||.|.||||||.|.||.||.||.||.||.||.||||..|
BL00342___ysg 663 TCTGTACGTTCCGATCTACGGAAAAGCGGAGTCGCTCAATGTGGCGGCCG 712
BSNT_04181___ 713 CGGCTGCCATCCTCGTGTATCACTTGCGAGGATAG 747
|.||.||..||||..|.|||||..|.||.|||||.
BL00342___ysg 713 CAGCCGCGGTCCTTCTTTATCATCTCCGCGGATAA 747
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.