Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04179 and BL00339
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:15
# Commandline: needle
# -asequence dna-align/BSNT_04179___pheT.1.5803.seq
# -bsequence dna-align/BL00339___pheT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04179___pheT-BL00339___pheT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04179___pheT-BL00339___pheT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04179___pheT
# 2: BL00339___pheT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2483
# Identity: 1797/2483 (72.4%)
# Similarity: 1797/2483 (72.4%)
# Gaps: 136/2483 ( 5.5%)
# Score: 6308.5
#
#
#=======================================
BSNT_04179___ 1 ATGTTTGTTTCTTATAAATGGTTAGAGGATTATGTTGATTTAAAAGGCAT 50
|||||||||||.|||||||||.|..|.||.||.||..|||||.|.||.||
BL00339___phe 1 ATGTTTGTTTCATATAAATGGCTGCAAGAATACGTGAATTTAGACGGGAT 50
BSNT_04179___ 51 GGAC-CCGGCTGTTCTTGCTGAAAAAATTACAAGAGCCGGTATTGAGGTT 99
||| ||.|...||||.||||||||.|||||||||..|||.|||||.||.
BL00339___phe 51 -GACTCCCGAGATTCTCGCTGAAAAGATTACAAGAAGCGGAATTGAAGTG 99
BSNT_04179___ 100 GAAGGAATTGAATACAAAGGAGAAGGCATCAAAGGCGTTGTCATCGGCCA 149
|||||.||.|||||.||.||||||||.||.|||||.||||||||.||.||
BL00339___phe 100 GAAGGCATCGAATATAAGGGAGAAGGAATTAAAGGTGTTGTCATTGGACA 149
BSNT_04179___ 150 TGTGCTGGAGCGCGAGCAGCACCCGAATGCTGATAAGCTGAATAAGTGCC 199
|||||||||||||||.|||||.|||||.||.||.||..|.||.||.||||
BL00339___phe 150 TGTGCTGGAGCGCGAACAGCATCCGAACGCCGACAAATTAAACAAATGCC 199
BSNT_04179___ 200 TTGTGGATATCGGAGCTGAAGCCCCTGTACAAATCATTTGCGGCGCGCCA 249
|.||.||||||||.|..||||..|||||.||.|||||.|||||.||.||.
BL00339___phe 200 TCGTCGATATCGGCGAAGAAGAGCCTGTCCAGATCATCTGCGGGGCTCCG 249
BSNT_04179___ 250 AATGTGGATAAGGGACAAAAAGTCGCAGTTGCAACAGTCGGAGCAGTGCT 299
||||||||.||.||.||||||||.||.||.||.||.||.||.||.||..|
BL00339___phe 250 AATGTGGACAAAGGGCAAAAAGTTGCCGTCGCCACGGTTGGCGCGGTATT 299
BSNT_04179___ 300 GCCGGGCAATTTCAAAATCAAAAAAGCCAAGCTTCGCGGTGAAGAATCAA 349
|||.||||||||.|||||||||||.||.|||||.|||||.||||..||.|
BL00339___phe 300 GCCCGGCAATTTTAAAATCAAAAAGGCGAAGCTCCGCGGGGAAGCGTCTA 349
BSNT_04179___ 350 ATGGCATGATCTGTTCCTTACAGGAGCTTGGCATCGAAAGCAAACTTGTG 399
|.||||||||.||.||.||.||||||||||||||..||.||||.||||||
BL00339___phe 350 ACGGCATGATATGCTCTTTGCAGGAGCTTGGCATTCAAGGCAAGCTTGTG 399
BSNT_04179___ 400 GCGAAGGAGTATGCAGAAGGCATTTTCGTATTCCCGAATGACGCTGAAAC 449
.||||.||.|||||.||||||||.|||||.||||||...||.||||||||
BL00339___phe 400 CCGAAAGAATATGCGGAAGGCATCTTCGTTTTCCCGGGCGATGCTGAAAC 449
BSNT_04179___ 450 -----AGGAAGCGATGCCTT---AGC--GGCTTTACAGCTTGACGATGCG 489
.|||.|| |||| ||| ||| |||.|||||||||
BL00339___phe 450 CGGGGCGGACGC----CCTTCAAAGCCTGGC------GCTCGACGATGCG 489
BSNT_04179___ 490 ATTCTTGAGCTGGGTTTAACGCCAAACCGCGCCGATGCCATGAACATGCT 539
.||||.||.|||||..|.|||||||||||||||||.||||||||||||||
BL00339___phe 490 GTTCTCGAACTGGGACTGACGCCAAACCGCGCCGACGCCATGAACATGCT 539
BSNT_04179___ 540 TGGTGTTGCTTACGAGGTTGCGGCGATTTTAGACACTGAGGTAAAGCTTC 589
.||.|||||.||.||.||.||.||||||.|.|.|...||.||.|||||.|
BL00339___phe 540 CGGCGTTGCCTATGAAGTGGCTGCGATTCTCGGCCGCGAAGTCAAGCTCC 589
BSNT_04179___ 590 CGCAAACGGATTACCCGGCTGCTTCAGAACAAGCGTCTGATTACATTTCA 639
|..|.||||.|||.|.|||.|...|.|||.|||||.|.||.||.|||||.
BL00339___phe 590 CTGAGACGGCTTATCAGGCAGGCGCCGAAAAAGCGGCGGACTATATTTCC 639
BSNT_04179___ 640 GTCAAAATTGAAGATCAAGAAGCGAACCCGCTGTACACTGCAAAAATCAT 689
||||||||||||||||..|||||.||.||..|.|||.|.||.||||||||
BL00339___phe 640 GTCAAAATTGAAGATCCTGAAGCCAATCCTTTATACGCGGCGAAAATCAT 689
BSNT_04179___ 690 TAAAAATGTCACGATTGCTCCGTCACCGCTTTGGATGCAGACAAAACTGA 739
||||.|.||||..||.|..|||||.|||||||||||||||||.||.||||
BL00339___phe 690 TAAAGACGTCAAAATCGGCCCGTCGCCGCTTTGGATGCAGACGAAGCTGA 739
BSNT_04179___ 740 TGAATGCAGGCATTCGTCCGCACAACAACGTCGTTGACATCACAAATTTT 789
|.||.||.|||||..|.|||||||||||.|||||.|||.|.||.||.|||
BL00339___phe 740 TCAACGCCGGCATCAGACCGCACAACAATGTCGTCGACGTTACGAACTTT 789
BSNT_04179___ 790 GTCCTGTTGGAATACGGACAGCCGCTTCATGCATTTGATTATGACAGATT 839
||.|||.|.||||||||.||||||||.||.||.||||||||||||.|.||
BL00339___phe 790 GTGCTGCTCGAATACGGCCAGCCGCTCCACGCGTTTGATTATGACCGCTT 839
BSNT_04179___ 840 TGGCTCTAAGGAAGTCGTAGTAAGAAAAGCAGCTGAGAATGAAATGAT-- 887
.|||||.||.||.|||||..|..|.|||||....|||||.||||.|||
BL00339___phe 840 CGGCTCAAAAGAGGTCGTCATCCGCAAAGCGTACGAGAACGAAACGATAA 889
BSNT_04179___ 888 CGTCACTCTTGATGATCAAGAACGTAAGCTGTCCGCCGATCACCTTGTTA 937
|| ||.||.||.||.||||||.|.|.||||.||.|.||.||||||||.|
BL00339___phe 890 CG--ACGCTCGACGAACAAGAAAGAACGCTGACCACTGAGCACCTTGTCA 937
BSNT_04179___ 938 TTACAAACGGAATGAAAG--------CGCAGGCCGTTGCGGGTGTCATGG 979
|.||||||| | |||||||.||.||.||.||.||||
BL00339___phe 938 TCACAAACG--------GCTCTTCTCCGCAGGCTGTCGCAGGCGTAATGG 979
BSNT_04179___ 980 GAGGAGCAGAGTCAGAGGTTCAGGAAGATAC-GAAAACGA---TTTTGCT 1025
|.|||||.||.|||||.||.|..|||||||| | ||| |..||||
BL00339___phe 980 GCGGAGCGGAATCAGAAGTCCGCGAAGATACTG----CGACAGTGCTGCT 1025
BSNT_04179___ 1026 TGAGGCTGCGTATTTCAACGGGCAGACGGTTCGCAAGGCTTCCAAAGACC 1075
.||.||.||||||||||||||.|||||.||||||||.||.||.||.||||
BL00339___phe 1026 GGAAGCGGCGTATTTCAACGGCCAGACCGTTCGCAAAGCATCAAAGGACC 1075
BSNT_04179___ 1076 TTGGTTTGAGAAGTGACTCAAGCGTAAGATTTGAAAAAGGAATTGATCCG 1125
|.|||.|..|.||.||.||||||||..|.|||||||||||.||.|||||.
BL00339___phe 1076 TCGGTCTTCGCAGCGAATCAAGCGTCCGCTTTGAAAAAGGCATCGATCCT 1125
BSNT_04179___ 1126 GCGCGCGTACGTCTTGCAGCAGAACGGGCTGCGCAGCTGATCCATCTGTA 1175
||.||.||.||.||.||.||||||||.||.||..|..|||||...|.|||
BL00339___phe 1126 GCACGGGTGCGCCTCGCTGCAGAACGCGCGGCAGATTTGATCAGCCGGTA 1175
BSNT_04179___ 1176 TGCCGGCGGTGAGGTGCTT-GCAGGAACAGTTGAGGAAGATCA-CCTGAC 1223
||||||.||....|| ||| |.|||.||.||.||.|||.|.|| |.||||
BL00339___phe 1176 TGCCGGAGGAACCGT-CTTGGAAGGTACGGTCGAAGAAAACCATCTTGAC 1224
BSNT_04179___ 1224 AATCGAAGCAAATAACATTCACGTATCTGCTGACAAAGTGA-GCAGCGTT 1272
|||.|||..|||..|||.|.|.|.||.|.|||.||||||| |.|| |||
BL00339___phe 1225 -ATCAAAGAGAATGTCATCCGCCTTTCCGTTGATAAAGTGACGAAG-GTT 1272
BSNT_04179___ 1273 CTAGGCCTGACGATCAGTAAAGAAGAACTGATCAGCATTTATAAACGTCT 1322
||.|||.||.|.|||||.|||||||||.||.|||.|||||.|.||.|.||
BL00339___phe 1273 CTCGGCATGTCCATCAGCAAAGAAGAAATGGTCAACATTTTTGAAAGGCT 1322
BSNT_04179___ 1323 CGGTTTTACGGTCGGTGAAGCGGGTGAACTT---CTCGTTGTGACTGTCC 1369
|||.|||.|.|| |||||..|.|||||.| ||.||.|||||.||.|
BL00339___phe 1323 CGGCTTTGCAGT---TGAAGACGCTGAACGTGAACTGGTCGTGACGGTTC 1369
BSNT_04179___ 1370 CATCACGCCGCGGCGACATTACAATAGAAGAGGATTTAATCGAAGAAGCG 1419
|.|||.|..|.|||||.|||.|.||.|||||.|||||.||||||||.|..
BL00339___phe 1370 CGTCAAGAAGAGGCGATATTGCGATTGAAGAAGATTTGATCGAAGAGGTC 1419
BSNT_04179___ 1420 GCAAGACTGTACGGCTACGATAACATTCCGTCTACGCTTCCTGAGACAGC 1469
||||||||||||||.||.||.||||||||||| ||.||.||
BL00339___phe 1420 GCAAGACTGTACGGATATGACAACATTCCGTC----------GACACTGC 1459
BSNT_04179___ 1470 GGGAACTA----------CAGGCGGATTAACGCCATACCAGGCAAAACGC 1509
.||||.|| |.||||||.|.||.||.||.||||..||.|||
BL00339___phe 1460 CGGAAGTAACAGGCTTTGCGGGCGGACTGACACCTTATCAGGACAAGCGC 1509
BSNT_04179___ 1510 CGTAAAGTCAGACGCTTCCTTGAAGGCGCA-GGCTTATCACAAGCCATCA 1558
.|.|||||.|||||||||||.|||||.||| ||||| ||.||.||.||||
BL00339___phe 1510 AGAAAAGTAAGACGCTTCCTGGAAGGAGCAGGGCTT-TCCCAGGCGATCA 1558
BSNT_04179___ 1559 CTTACTCACTGACAAACGAGAAGAAAGCGGCAGCGTTTGCG-ATT-GAAA 1606
|.||||||.|.||||||||.||.||||||.|.|| ||.|| ||| ||||
BL00339___phe 1559 CATACTCATTAACAAACGATAAAAAAGCGACGGC--TTACGCATTGGAAA 1606
BSNT_04179___ 1607 AGTCATTGAATACTGTGCTTGCGCTTCCAATGAGTGAAGAAAGAAGCATT 1656
|.||.||.||.||..|.|||.|.||.||.|||||.||.|||||||||.|.
BL00339___phe 1607 AATCGTTTAAAACGATCCTTTCACTGCCGATGAGCGAGGAAAGAAGCGTG 1656
BSNT_04179___ 1657 CTCAGACACAGTCTTGTTCCGAATCTGCTTGATTCTGTTTCTTACAACCT 1706
||.||.|||||.||..|.||.||||||||.|||||.|||.|.||||||.|
BL00339___phe 1657 CTGAGGCACAGCCTGCTCCCTAATCTGCTCGATTCGGTTGCATACAACTT 1706
BSNT_04179___ 1707 CGCGAGGCAGACTGACTCAGTTGCACTGTACGAAGTCGGCTCCGTTTTCC 1756
.||.||||||.|.||.||||.|||..|.||.|||.||||.||.||||||.
BL00339___phe 1707 GGCAAGGCAGGCCGATTCAGCTGCTTTTTATGAAATCGGTTCTGTTTTCT 1756
BSNT_04179___ 1757 TGACGAAG--GAAGAGGACACAAAACCTGTTGAAACAGAACGCGTAGCAG 1804
||| ||| |||||..|.||.|||||.||.||||.|||||.|||.||.|
BL00339___phe 1757 TGA--AAGCCGAAGAACATACGAAACCGGTCGAAAAAGAACACGTCGCCG 1804
BSNT_04179___ 1805 GAGCTGTTACCGGATTATGGCGCAAGCAGCTATGGCAGGGTGAAAAGAAA 1854
||||.||.||.||..|.||||.|||..|.||.||||||||.||.||.||.
BL00339___phe 1805 GAGCCGTGACAGGCCTGTGGCACAAAAACCTCTGGCAGGGCGAGAAAAAG 1854
BSNT_04179___ 1855 CCAGTTGATTTCTTTGTTGTCAAAGGAATTGTAGAAGGGCTGTTAGACAA 1904
||.|||||||||||.||.||.|||||.||.||.|||||.|||||.||.||
BL00339___phe 1855 CCGGTTGATTTCTTCGTCGTAAAAGGCATCGTCGAAGGTCTGTTGGAAAA 1904
BSNT_04179___ 1905 ACTC--AACGTCCTAGACAGCATTGAATTTGTACAGTCTGAACGCAAACA 1952
.||| || ||...||..||||.|||||.|..||.||||||.|.|||.|
BL00339___phe 1905 GCTCGGAA--TCACCGAAGGCATCGAATTCGCTCAATCTGAAAGAAAAGA 1952
BSNT_04179___ 1953 GCTGCATCC-GGGCAGAACAGCGAACATTTTATTGAATGGTTCTCTGATC 2001
|||.||||| |||| |.|||||.||.|||||....||.||.||..|..||
BL00339___phe 1953 GCTTCATCCTGGGC-GGACAGCCAATATTTTGCACAACGGCTCATTAGTC 2001
BSNT_04179___ 2002 GGCTTCATCGGCCAAGTCCACCCTTCATTGGAAAAAGAACTGGATATAAA 2051
||||||||||||||..|.||.||.|||.|.||||||||.|||||..|.|.
BL00339___phe 2002 GGCTTCATCGGCCAGCTGCATCCGTCAGTTGAAAAAGAGCTGGACCTGAG 2051
BSNT_04179___ 2052 GGAAACATACGTATTTGAGCTCGATCTTCATGCGTTGCTC---------- 2091
.||.||.||.||.|||||.||.||.||.||.|.|.|.|||
BL00339___phe 2052 CGACACGTATGTGTTTGAACTGGACCTGCACGAGCTCCTCCGATTGGATG 2101
BSNT_04179___ 2092 --GCGGCAGAAACAGCACCGCTTGTTTACACGGCGATTCCGAAATATCCG 2139
.||| |.|.||| ||.||||| |.||||||||.|||||.
BL00339___phe 2102 TACCGG-----AGATCAC-----GTATACAC--CAATTCCGAAGTATCCT 2139
BSNT_04179___ 2140 TCTGTGACACGTGATATTGCTCTTGTAACAGATAAA-----ACCGTCACA 2184
|||||.|||.|.||.||.||.|||||...|||.||| |.||.|
BL00339___phe 2140 TCTGTTACAAGGGACATCGCGCTTGTTGTAGACAAACAAACAACGGC--- 2186
BSNT_04179___ 2185 AGCGGACAGCTCGAGAGCGTCATTAAAGAGGCTGGCGGCAAGCTTCTGAA 2234
|||.|||||.|||..||||||.|||...||.||||||||....|||||
BL00339___phe 2187 --CGGCCAGCTTGAGGACGTCATCAAAACAGCAGGCGGCAAATGGCTGAA 2234
BSNT_04179___ 2235 AGAGGTAACC--GTCTTTGACGTATACGAAGGCGAACATATGGAGGAAGG 2282
|||.|| || |||||||||||.||.||||||||.||.|||||.|||||
BL00339___phe 2235 AGAAGT--CCATGTCTTTGACGTCTATGAAGGCGAGCACATGGAAGAAGG 2282
BSNT_04179___ 2283 CAAGAAGTCAGTCGCTTTCTCACTCCAGTATGTCAACCCTGAACAAACAC 2332
|||||||||.|||||.|||...||.||.|||.|.||.||||||||.|||.
BL00339___phe 2283 CAAGAAGTCCGTCGCCTTCAGCCTGCAATATTTGAATCCTGAACAGACAT 2332
BSNT_04179___ 2333 TGACTGAAGAAGAAGTGACAAAGGCGCACAGCAAAGTGCTGAAAGCGTTA 2382
||||.|||||||||||||||||.|..|||..|.||||||||||||||.|.
BL00339___phe 2333 TGACAGAAGAAGAAGTGACAAAAGTCCACGACCAAGTGCTGAAAGCGCTG 2382
BSNT_04179___ 2383 GAAGACACATATCAAGCTGTTTTAAGAGGCTGA 2415
|||||.|.||||||.|||||.||.|||||.|.|
BL00339___phe 2383 GAAGATAAATATCAGGCTGTATTGAGAGGATAA 2415
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