Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04171 and BL00333
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_04171___mutSB.1.5803.seq
# -bsequence dna-align/BL00333___mutSB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04171___mutSB-BL00333___mutSB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04171___mutSB-BL00333___mutSB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04171___mutSB
# 2: BL00333___mutSB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2399
# Identity: 1801/2399 (75.1%)
# Similarity: 1801/2399 (75.1%)
# Gaps: 82/2399 ( 3.4%)
# Score: 6615.0
#
#
#=======================================
BSNT_04171___ 1 GTGCAGCAAAAAGTATTATCAGCTCTTGAATTTCATAAAGTGAAAGAACA 50
.||||||||||||...|||||||.|||||||||||||||||.||||||||
BL00333___mut 1 TTGCAGCAAAAAGCGCTATCAGCACTTGAATTTCATAAAGTAAAAGAACA 50
BSNT_04171___ 51 GGTTATTGGGCATGCCGCTTCATCGCTCGGAAAAGAAATGCTTCTCGAGC 100
|.|.|..|.||||||.||.||.||..|.||.||.|||||||||.|.||.|
BL00333___mut 51 GCTCACAGAGCATGCGGCATCTTCTTTGGGGAAGGAAATGCTTTTGGAAC 100
BSNT_04171___ 101 TTAAGCCTTCTGCTTCTATAGACGAAATTAAAAAACAGCTGGATGAAGTA 150
|.||.|||||...|||..|.||.|||.|||||||.|.||.|||.|||||.
BL00333___mut 101 TCAAACCTTCCCGTTCGCTCGAAGAAGTTAAAAAGCTGCAGGAAGAAGTC 150
BSNT_04171___ 151 GACGAAGC--------TTCTGACATTATCCGGCTGAGAGGCCAAGCG--C 190
||.||||| |.||| ||..|.|.||| ||||| |
BL00333___mut 151 GATGAAGCAGGAACCGTCCTG--------CGTTTAAAAGG--AAGCGCCC 190
BSNT_04171___ 191 CATTTGGCGGCCTTGTAGATATCAGAGGAGCGTTAAGACGGGCGGAAATC 240
|.||.|||||||||...||.||.|||..||||||||||.||||.||||||
BL00333___mut 191 CTTTCGGCGGCCTTACGGACATTAGAAAAGCGTTAAGAAGGGCAGAAATC 240
BSNT_04171___ 241 GGCAGCGTTCTCAGTCCTTCTGAATTCACTGAAATCTCAGGCCTGCTTTA 290
||||||.||.|.||.||..|.|||||.||||||||.||.||.|||||.||
BL00333___mut 241 GGCAGCATTTTAAGCCCGGCGGAATTGACTGAAATATCGGGTCTGCTATA 290
BSNT_04171___ 291 TGCAGTTAAACAAATGAAACATTTTATCACCCAAATGGCT----GAAGAC 336
.||||..|||||.|||||.||.||| |...||.|.|| ||||||
BL00333___mut 291 CGCAGCAAAACAGATGAAGCACTTT----CTTGAAGGCCTGTTCGAAGAC 336
BSNT_04171___ 337 GGTGTCGACATTCCGCTGATC--CATCAGCATGCTGAACAGCTTATCACG 384
||.||.||.|||| ||.||| |||||..||||.|||.||||.||..||
BL00333___mut 337 GGGGTTGAGATTC--CTTATCTTCATCAATATGCAGAAAAGCTCATACCG 384
BSNT_04171___ 385 CTGTCCGATTTAGAGCGGGACATTAATTCCTGCATTGATGATCACGGAGA 434
||.|||||.||.||..|||||||.|||||.|||||.||||||||.||.||
BL00333___mut 385 CTTTCCGAATTGGAAAGGGACATCAATTCGTGCATCGATGATCATGGGGA 434
BSNT_04171___ 435 AGTGCTTGATCATGCATCGGAAACATTAAGAGGAATCCGCACACAGCTCA 484
||||||||||||||||||.||.||.|||||.||||||.|.||.|||||..
BL00333___mut 435 AGTGCTTGATCATGCATCAGAGACGTTAAGGGGAATCAGGACCCAGCTGC 484
BSNT_04171___ 485 GAACACTCGAATCAAGAGTCAGAGACCGGTTAGAGTCGATGCTGCGTTCC 534
|.||.||.|||||||||.||||.||||||.|.||.||||||||||||||.
BL00333___mut 485 GGACGCTTGAATCAAGAATCAGGGACCGGCTGGAATCGATGCTGCGTTCT 534
BSNT_04171___ 535 TCTTCCGCTTCGAAAATGCTGTCTGATACGATTGTTACGATTCGGAATGA 584
||.||.||....|||||||||||.||||||||..|.||||||||.||.||
BL00333___mut 535 TCATCTGCGCAAAAAATGCTGTCGGATACGATCATCACGATTCGCAACGA 584
BSNT_04171___ 585 CCGCTTTGTGATCCCGGTCAAACAGGAGTACAGATCCAGCTATGGAGGAA 634
||||||.||.|||||.||||||||||||||||||||.|||||.|||||||
BL00333___mut 585 CCGCTTCGTCATCCCTGTCAAACAGGAGTACAGATCAAGCTACGGAGGAA 634
BSNT_04171___ 635 TTGTGCACGA-CACCTCATCCTCTGGTGCGACATTATTCATTGAACCGCA 683
|.|||||||| || .||.||.||.|||||||||||.||.||.||.||.||
BL00333___mut 635 TCGTGCACGATCA-GTCTTCTTCCGGTGCGACATTGTTTATCGAGCCTCA 683
BSNT_04171___ 684 GGCGATTGTAGATATGAACAATTCCCTTCAGCAGGCGAAAGTGAAAGAAA 733
|||||||||.||||||||||||.|.||||..|||||.|||||.||.||||
BL00333___mut 684 GGCGATTGTCGATATGAACAATGCGCTTCGCCAGGCAAAAGTAAACGAAA 733
BSNT_04171___ 734 AGCAAGAAATTGAACGGATTTTGCGTGTGCTGACAGAGAAAACGGCAGAG 783
|.||.||.|||||||||||||||||.||.||||||||.||.|||||||||
BL00333___mut 734 AACAGGAGATTGAACGGATTTTGCGCGTCCTGACAGAAAAGACGGCAGAG 783
BSNT_04171___ 784 TATACAGAGGAGCTATTTCTAGATTTGCAAGTGCTGCAGACGCTTGACTT 833
.|.|||.|.|||||.||||..|||.|..|||||||.||||||||.|||||
BL00333___mut 784 CACACAAATGAGCTCTTTCACGATGTCAAAGTGCTTCAGACGCTGGACTT 833
BSNT_04171___ 834 TATTTTTGCAAAAGCTAGATATGCAAAAGCGGTTAAAGCGACAAAACCGA 883
|||||||||||||||.|.|||||||||||||...||||||...||||||.
BL00333___mut 834 TATTTTTGCAAAAGCAAAATATGCAAAAGCGACAAAAGCGGTTAAACCGG 883
BSNT_04171___ 884 TTATGAACGACACCGGCTTTATCCGTTTGAAAAAAGCCCGCCATCCATTG 933
.|.|.||||....|||||.|.||||..|||...||||||||||.|| |
BL00333___mut 884 CTGTCAACGCTGACGGCTATGTCCGCCTGATTCAAGCCCGCCACCC---G 930
BSNT_04171___ 934 CTT---CCGCCT-GACCAGGTTGTTGCCAATGACATCGAGCTTGGCCGCG 979
||| || ||| ||..||||.|||.|.|||||.||.|||||.|||.|.|
BL00333___mut 931 CTTTTGCC-CCTGGATGAGGTCGTTCCGAATGATATTGAGCTCGGCGGAG 979
BSNT_04171___ 980 ATTTTTCAACCATTGTCATCACAGGGCCAAACACCGGGGGGAAAACAGTC 1029
|.|.|.|.||.|||||||||||.||.||.|||||.|||||||||||.||.
BL00333___mut 980 AGTATACGACAATTGTCATCACGGGCCCGAACACGGGGGGGAAAACGGTG 1029
BSNT_04171___ 1030 ACCCTTAAAACGTTAGGCCTGCTAACCTTAATGGCGCAATCAGGTCTTCA 1079
||.||.||||||.|.||.||..|.|||.|.||||||||.||.||..|.||
BL00333___mut 1030 ACGCTCAAAACGCTCGGGCTTTTGACCATGATGGCGCAGTCGGGATTGCA 1079
BSNT_04171___ 1080 TATCCCGGCAGATGAAGGGTCAGAAGCGGCAGTATTTGAGCACGTATTCG 1129
..|.|||||.||.|||||.|||||..|.||.||||||||.||.|||||.|
BL00333___mut 1080 CGTACCGGCGGAAGAAGGATCAGAGACCGCCGTATTTGATCAAGTATTTG 1129
BSNT_04171___ 1130 CTGATATCGGTGATGAACAGTCGATTGAGCAAAGTTTAAGTACGTTCTCA 1179
|.||||||||.|||||||||||.||.||.|||||.||||||||||||||.
BL00333___mut 1130 CCGATATCGGCGATGAACAGTCAATCGAACAAAGCTTAAGTACGTTCTCG 1179
BSNT_04171___ 1180 TCCCATATGGTGAACATTGTCGGCATTTTAGAACAGGTCAATGAAAACAG 1229
||.||||||||.|||||.||||..|||||..||.|..|.|..||||||||
BL00333___mut 1180 TCGCATATGGTCAACATCGTCGATATTTTGAAAGACATGACGGAAAACAG 1229
BSNT_04171___ 1230 CCTTGTGCTTTTCGATGAACTTGGTGCAGGGACAGATCCGCAGGAGGGGG 1279
||||||||||||.||.||.||.|||||.||.|||||.||||||||.||.|
BL00333___mut 1230 CCTTGTGCTTTTTGACGAGCTCGGTGCCGGAACAGACCCGCAGGAAGGCG 1279
BSNT_04171___ 1280 CGGCCCTCGCCATGAGCATCTTGGATGACGTG-------CATCGCACCAA 1322
|||||||.||.||.||||||.|.|||||.||| || .||
BL00333___mut 1280 CGGCCCTTGCGATCAGCATCCTTGATGAGGTGTGCCAGACA-GGC----- 1323
BSNT_04171___ 1323 TGCACGAGTGTTAGCTACGACGCATTATCCGGAATTGAAGGCGTACGGCT 1372
|||||.||..|.||.|||||.|||||.|||||..|||||||.|||||||
BL00333___mut 1324 -GCACGCGTCATTGCCACGACCCATTACCCGGAGCTGAAGGCATACGGCT 1372
BSNT_04171___ 1373 ATAACAGAGAAGGCGTCATGAATGCCAGCGTTGAATTTGACATCGAAACG 1422
|.||..|.|||...|||||.|||||.|||||.||||||||.|||||.||.
BL00333___mut 1373 ACAATCGCGAAAATGTCATTAATGCAAGCGTCGAATTTGATATCGATACA 1422
BSNT_04171___ 1423 CTGTCACCGACCTATAAACTTTTAATTGGTGTGCCGGGTCGAAGCAATGC 1472
||.||||||||.||.||.|||||||||||.|||||.||.|||||||||||
BL00333___mut 1423 CTATCACCGACATACAAGCTTTTAATTGGAGTGCCCGGCCGAAGCAATGC 1472
BSNT_04171___ 1473 TTTCGAAATTTCAAAACGCCTCGGGCTTCCGGACCATATCATCGGGCAGG 1522
.||||||||.||.||.|||||||||||.||.||..|..|.|||||.|..|
BL00333___mut 1473 GTTCGAAATCTCGAAGCGCCTCGGGCTGCCTGATTACCTGATCGGCCGCG 1522
BSNT_04171___ 1523 CGAAGTCAGAAATGACGGCCGAGCATAACGAAGTCGATACGATGATTGCG 1572
|.||..|.||.|||||||||||.|||||.|||||.|||||||||||.||.
BL00333___mut 1523 CAAAAGCGGAGATGACGGCCGAACATAATGAAGTTGATACGATGATCGCA 1572
BSNT_04171___ 1573 TCGCTGGAACAAAGCAAAAAACGTGCGGAAGAAGAGCTTTCTGAGACAGA 1622
|||||||||.|.||||||||.||.||.||||..|||||....|||||.||
BL00333___mut 1573 TCGCTGGAAGACAGCAAAAAGCGCGCAGAAGCGGAGCTCAAGGAGACCGA 1622
BSNT_04171___ 1623 ATCAATCAGAAAAGAAGCGGAAAAACTGCATAAAGAGCTGCAGCAGCAAA 1672
|.|.|||.|....|||||.|||...||.||....||.|||||||||||.|
BL00333___mut 1623 AGCCATCCGCGCGGAAGCTGAAGCCCTTCACCGCGACCTGCAGCAGCAGA 1672
BSNT_04171___ 1673 TCATCGA---GCTTAACAGCAAAAAAGACAAAATGCT---TGAAGAGGCA 1716
|||.||| || |..|| ||||||||||| ||| .|||||.||.
BL00333___mut 1673 TCAGCGAATGGC--AGGAG-AAAAAAGACAA---GCTCTACGAAGAAGCG 1716
BSNT_04171___ 1717 GAACAGCAGGCTGCTGAAAAAGTAAAAGCGGCAATGAAAGAAGCCGAGGA 1766
||.||..|.||.|||||||||||.|||||.||.|||||||||||.||.||
BL00333___mut 1717 GAGCAAAAAGCGGCTGAAAAAGTCAAAGCAGCGATGAAAGAAGCAGACGA 1766
BSNT_04171___ 1767 CATTATTCATGAATTGCGCACCATAAAAGAAGAACACAAATCCTTCAAGG 1816
|||.||.||.....|.||||..||.||||||||.||.|||.|.||.||.|
BL00333___mut 1767 CATCATCCAGTCGCTCCGCATGATCAAAGAAGACCATAAAGCATTTAAAG 1816
BSNT_04171___ 1817 ATCACGAGCTGATTAACGCGAAGAAACGGTTAGAAGGCGCTATGCCGGCT 1866
|.||.||||||||..|.|||||.||.||..|.||||..||..||||..|.
BL00333___mut 1817 ACCATGAGCTGATCGAGGCGAAAAAGCGCCTTGAAGAAGCCGTGCCTTCG 1866
BSNT_04171___ 1867 TTTGAAAAGTCCAAGAAACCGG---AAAAACCGAAAGCGCAAAAACGCGA 1913
||||||||..|.||.||.|||| |.||| |||.||.|.||.|||||
BL00333___mut 1867 TTTGAAAAAGCGAAAAAGCCGGCTCAGAAA---AAAACGGACAAGCGCGA 1913
BSNT_04171___ 1914 CTTTAAGCCTGGCGACGAGGTGAAAGTCCTCACTTTCGGGCAAAAAGGAA 1963
.||.||.||.|||||.||.||.|||||..|.||.||.||.||||||||.|
BL00333___mut 1914 ATTAAAACCGGGCGATGAAGTCAAAGTTTTAACCTTTGGCCAAAAAGGGA 1963
BSNT_04171___ 1964 CATTGCTCGAAAAAACAG--GCGGCAATGAATGGAATGTTCAAATCGGTA 2011
|..|||||||||||||.| ||||| .|||||||||||.||||||||.|
BL00333___mut 1964 CGCTGCTCGAAAAAACGGGTGCGGC--CGAATGGAATGTGCAAATCGGCA 2011
BSNT_04171___ 2012 TTTTAAAGATGAAAGTAAAAGAAAAAGATCTGGAGTTTATCAAATCAGCT 2061
|..|.||.|||||.||.||.|||||.||||||||.||..|.|||||.||.
BL00333___mut 2012 TCCTGAAAATGAAGGTCAAGGAAAAGGATCTGGAATTCCTGAAATCGGCA 2061
BSNT_04171___ 2062 CCGGAGCAAAAAAAAGAAAAAATCATTACAGCGGTC-AAGGGAAAGGACT 2110
||.||.|...|.|||.||||||..||..|.||.||| |||||||| ||.|
BL00333___mut 2062 CCCGAACCCGAGAAACAAAAAACGATCGCCGCCGTCAAAGGGAAA-GATT 2110
BSNT_04171___ 2111 ATCACGTATCGCTTGAACTTGATCTCCGCGGCGAACGCTATGAAAATGC- 2159
|||||||.|||||.|||||.||.||..|.||.||.||.|.|||||||||
BL00333___mut 2111 ATCACGTCTCGCTCGAACTCGACCTTAGGGGGGAGCGGTTTGAAAATGCG 2160
BSNT_04171___ 2160 CCTCAGCCGGGTTGAAAAATACTTGGATGATGCGGTGTTAGCCGGATATC 2209
|.||| |||||||||||||||||||||||||||||||.|.||.||.||||
BL00333___mut 2161 CTTCA-CCGGGTTGAAAAATACTTGGATGATGCGGTGCTTGCGGGCTATC 2209
BSNT_04171___ 2210 CAAGAGTGTCAATCATCCACGGAAAAGGAACCGGCGCTTTAAGAAAAGGC 2259
|.|||||.||.|||||.||||||||||||||||||||..|..||||||||
BL00333___mut 2210 CGAGAGTCTCGATCATTCACGGAAAAGGAACCGGCGCCCTCCGAAAAGGC 2259
BSNT_04171___ 2260 GTACAGGATCTTCTGAAAAACCACCGCAGCGTCAAAAGTTCCCGTTTCGG 2309
||.|||||.||..|||||..||||||||..||.||||..|||||.|||||
BL00333___mut 2260 GTCCAGGACCTATTGAAATCCCACCGCAATGTGAAAAACTCCCGGTTCGG 2309
BSNT_04171___ 2310 TGAAGCAGGTGAGGGAGGATCAGGCGTTACGGTTGTTGAACTAAAATAA 2358
.|||||.||.||||||||||||||.||.||..||||.|||.||||||||
BL00333___mut 2310 CGAAGCGGGAGAGGGAGGATCAGGAGTCACCATTGTCGAATTAAAATAA 2358
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