Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04168 and BL00331
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_04168___lcfA.1.5803.seq
# -bsequence dna-align/BL00331___lcfA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04168___lcfA-BL00331___lcfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04168___lcfA-BL00331___lcfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04168___lcfA
# 2: BL00331___lcfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1767
# Identity: 1218/1767 (68.9%)
# Similarity: 1218/1767 (68.9%)
# Gaps: 171/1767 ( 9.7%)
# Score: 3998.5
#
#
#=======================================
BSNT_04168___ 1 ATGCAGTCTCAAAAGCCGTGGCTTGCCG--AGTATCCC-AACGATATCCC 47
||||.|.||.||||.|||||||| .|| |.|||||| ||| |.||.||
BL00331___lcf 1 ATGCCGACTGAAAAACCGTGGCT--GCGTCATTATCCCGAAC-AAATTCC 47
BSNT_04168___ 48 GCATGAGCTTCCGTTGCCGA--ATAAAACCCTGCAATCCATCCTGACAGA 95
.||.|||||.|..|| .|| ||.||||.||.||.|||||||||..|.|
BL00331___lcf 48 TCACGAGCTGCAATT--TGAAGATCAAACACTCCATTCCATCCTGCAACA 95
BSNT_04168___ 96 CTCCGCC--GCACGATTCCCTGATAAAACCGCAATATCGTTTTAT-GGAA 142
.|||||| ||| .||..|.||.|||||.||.|| ||.||||.| ||||
BL00331___lcf 96 ATCCGCCCAGCA--GTTTTCAGAAAAAACAGCGAT-TCATTTTCTAGGAA 142
BSNT_04168___ 143 AAAAAC--TC--ACC------TTTCATGACATTCTGACGGATGCTCTTAA 182
|||||| || ||| ||| |.|| |||||||.|.||
BL00331___lcf 143 AAAAACGTTCGTACCGGGAAGTTT-ACGA---------GGATGCTTTAAA 182
BSNT_04168___ 183 ACTTGCAGCTT------TTTTGCAGGGCAATGGCCTGCAAAAAGGAGACA 226
|.|.||||.|| |.|.||..|||| |.|||||||||||||
BL00331___lcf 183 AATGGCAGATTACCTGCTGTCGCTCGGCA------TTCAAAAAGGAGACA 226
BSNT_04168___ 227 GAGTGGCTGTTATGCTGCCCAATTGCCCGCAAACAGTGATTTCTTATTAT 276
||||..|..|.||||||||.||.||||||||..|.||.||..|.|||||.
BL00331___lcf 227 GAGTATCGATCATGCTGCCGAACTGCCCGCAGGCGGTTATCGCGTATTAC 276
BSNT_04168___ 277 GGCG-TCTTGTTTGCCGGTGGCATCGTGGTGCAGACGAATCCGCTTTATA 325
|||| |||| ||..||||.||||||||.||.|||||.||||||||.||||
BL00331___lcf 277 GGCGTTCTT-TTCTCCGGCGGCATCGTCGTCCAGACAAATCCGCTGTATA 325
BSNT_04168___ 326 CCGAGCACGAGCTTGAATACCAGCTTAGAGATGCTCA----GGTAAGTGT 371
|.||....|||||||||.|.|.||||...|| || ||.||...|
BL00331___lcf 326 CGGAAAGGGAGCTTGAACATCTGCTTCATGA----CAGCGGGGCAACCAT 371
BSNT_04168___ 372 AATCATCACCTTAGATTTGCTTTTCCCGAAGGCAATA-AAAATGAAAACG 420
.|||||.||..|.||..||||.|.||||..||| ||| |||||||||.||
BL00331___lcf 372 CATCATTACGCTCGACATGCTGTACCCGGCGGC-ATATAAAATGAAAGCG 420
BSNT_04168___ 421 TTATCAA----TAGTCGACCAGATTTTGATAACCAGCGTAAAAGACTATT 466
.||.||| |||.| ||...|||..| ||.|||.|||||||.||..
BL00331___lcf 421 CTAACAAGCATTAGGC-ACATCATTGCG---ACAAGCATAAAAGATTACC 466
BSNT_04168___ 467 TGCCTTTTCCGAAGAATATTCTTTACCCGCTGACG--CAAAAACAAAAAG 514
|||||||.||.||.|||.|.||.||||||.| || |||| ||||||
BL00331___lcf 467 TGCCTTTCCCTAAAAATCTGCTGTACCCGAT--CGTTCAAA---AAAAAG 511
BSNT_04168___ 515 TG---CATATCGACTTTGA---CAAAACAGCTAACATT-------CACAC 551
.| ||.||...|.|||| ||| |.|.|.| |.|||
BL00331___lcf 512 AGAATCAAATGTCCGTTGAGATCAA------TGAAAATGAGACGACCCAC 555
BSNT_04168___ 552 GTTCGCTTC--CAGTATGAAGCAGGAAA-----------AAACTGAACTC 588
.|| ||| ||..|| ||.|||| ||.|.||.|.|
BL00331___lcf 556 CTT---TTCCGCACCAT----CATGAAACGCCCCGTTCCAAGCGGACCGC 598
BSNT_04168___ 589 CTGACAATCCCGAAGATCGATCCTGAGCATGATATCGCTGTCCTCCAGTA 638
|.|..|.| ||| ||.|||||.|..||.||.||.||.|||||.|||||
BL00331___lcf 599 CCGGTATT---GAA-ATTGATCCGGCCCACGACATTGCCGTCCTGCAGTA 644
BSNT_04168___ 639 TACCGGAGGAACAACCGGAGCTCCAAAAGGGGTCATGCTCACGCACCAAA 688
||||||||||||.||.||..|.||||||||.||||||||||..||||..|
BL00331___lcf 645 TACCGGAGGAACGACAGGCACGCCAAAAGGCGTCATGCTCAGCCACCGCA 694
BSNT_04168___ 689 ATATTTTGGCAAATACTGAAATGTGCGCCGCTTGGATGTATGACGTGAAA 738
|.||..|.||.||.|..||.|||||||||||.|||.|.|||.|..||||.
BL00331___lcf 695 ACATACTAGCCAACATGGAGATGTGCGCCGCCTGGTTTTATCAATTGAAT 744
BSNT_04168___ 739 GAAGGCGCTGAAAAAGTGCTGGGCATCGTCCCGTTTTTTCATGTCTACGG 788
.||||.|..||.||.||||||||.|||||.|||||||||||.||||||||
BL00331___lcf 745 AAAGGGGAGGAGAAGGTGCTGGGGATCGTTCCGTTTTTTCACGTCTACGG 794
BSNT_04168___ 789 ACTGACGGCAGTCATGAACTATTCGATTAAACTAGGCTTCGAAATGATTC 838
|.|||||||.|||.||||.|...||||.|..|..||.|..||||||||.|
BL00331___lcf 795 AATGACGGCCGTCTTGAATTTCACGATCAGGCAGGGGTATGAAATGATCC 844
BSNT_04168___ 839 TTCTTCCTAAGTTTGATCCGCTCGAAACACTTAAAATCATCGACAAACAC 888
|.||.||.|..|||||..|||.||.|.|.||.||||..|||||.|||.|.
BL00331___lcf 845 TGCTGCCGAGATTTGACGCGCGCGCAGCGCTGAAAACGATCGATAAAGAA 894
BSNT_04168___ 889 AAACCGACGCTCTTTCCTGGCGCACCGACAATTTACATTGGCCTTTTGCA 938
||.||||||.|.|||||.||.||.|||||.|||||.||.|.|||.|||.|
BL00331___lcf 895 AAGCCGACGATATTTCCGGGGGCGCCGACGATTTATATCGCCCTGTTGAA 944
BSNT_04168___ 939 TCACCCCGAATTGCAGCATTATGATCTGTCATCCATTAAAAGCTGTCTTA 988
.||.|||||..|.||.||.||.|||||||||||.|||||.||||||.|.|
BL00331___lcf 945 CCATCCCGACCTTCACCAATACGATCTGTCATCGATTAAGAGCTGTTTGA 994
BSNT_04168___ 989 GCGGATCAGCCGCGCTCCCTGTGGAGGTAAAGCAGAAATTTGAAAAGGTG 1038
|||||||.||.|||||.|||||.||.||.||.|||.|.||||||||||||
BL00331___lcf 995 GCGGATCTGCGGCGCTTCCTGTTGAAGTCAAACAGCAGTTTGAAAAGGTG 1044
BSNT_04168___ 1039 ACTGGCGGAAAGCTTGTGGAAGGCTATGGTTTGTCTGAGGCATCCCCAGT 1088
||.|||||||.||||||.|||||.|||||..|||||||..|.||.||.||
BL00331___lcf 1045 ACGGGCGGAAGGCTTGTCGAAGGTTATGGAATGTCTGAAACGTCGCCGGT 1094
BSNT_04168___ 1089 GACGCACGCCAATTTTATCTGGG----GAAAAAACAAGCCGGGCAGTATC 1134
.||.||||||||||||||.|||| |||.||| .|||||||||||
BL00331___lcf 1095 CACTCACGCCAATTTTATTTGGGATTTGAATAAA----GCGGGCAGTATC 1140
BSNT_04168___ 1135 GGCTGTCCTTGGCCAAGTACGGACGCTGCGATCTATTCTGAAGAGACGGG 1184
||.|||||||||||..||||.||||||||.||||||||.|||||.||.||
BL00331___lcf 1141 GGGTGTCCTTGGCCTGGTACAGACGCTGCTATCTATTCGGAAGAAACCGG 1190
BSNT_04168___ 1185 TGAGCTTGC-CGCTCCGTATGAGCATGGAGAAATCATTGTAAAAGGTCCG 1233
.| |.||.| ||..||.||||||||||||||||||..|||.|||||.|||
BL00331___lcf 1191 CG-GTTTTCTCGGGCCTTATGAGCATGGAGAAATCGCTGTCAAAGGACCG 1239
BSNT_04168___ 1234 CAAGTCATGAAAGGATACTGGAATAAACCAGAGGAAACCGCCGCAGTG-C 1282
||.||.||||||||.||||||||.||....||.||||||| |.|||.| |
BL00331___lcf 1240 CAGGTGATGAAAGGCTACTGGAACAATGATGAAGAAACCG-CTCAGAGTC 1288
BSNT_04168___ 1283 TGAGAGATGGCTGGCTGTTCACCGGGGACATGGGCTATATGGATGAAGAA 1332
|.||.||.||||||.|.||.|||||.|||||.|||||.||||||.||||.
BL00331___lcf 1289 TAAGGGACGGCTGGTTTTTTACCGGAGACATCGGCTACATGGATAAAGAC 1338
BSNT_04168___ 1333 GGCTTTTTCTATATTGCTGACAGGAAGAAGGATATCATCATTGCCGGCGG 1382
|||||.||.|||||.|..|||.|.||.||.||..|.|||||||||||.||
BL00331___lcf 1339 GGCTTCTTTTATATCGTCGACCGCAAAAAAGACGTGATCATTGCCGGGGG 1388
BSNT_04168___ 1383 TTACAATATTTACCCGCGTGAGGTAGAAGAAGCGCTTTATGAACATGAAG 1432
.|||||.||.||||||||.||..|.|||||||.|||.||.||.|||||||
BL00331___lcf 1389 ATACAACATCTACCCGCGCGAAATCGAAGAAGTGCTCTACGAGCATGAAG 1438
BSNT_04168___ 1433 CCATACAGGAAATTGTTGTTGCAGGCGTTCCCGATTCCTACAGGGGAGAA 1482
||.|.|||||....||.|||||.|||.|.||.|||...||||||||.|||
BL00331___lcf 1439 CCGTTCAGGAGGCGGTCGTTGCCGGCATCCCTGATGAATACAGGGGGGAA 1488
BSNT_04168___ 1483 ACAGTAAAAGCATTTGTCGT-ATTAAAGA--AAGGCGCAAAAGCCGATGC 1529
||.||.||.||.|||||.|| .|.||||| |.|...|||.| |.|.
BL00331___lcf 1489 ACGGTTAAGGCTTTTGTTGTGCTGAAAGATCATGTTACAATA----ACGG 1534
BSNT_04168___ 1530 AGAA-GAACTGGACGCTTTTGCGAGATCACGTCTAGCTCCCTATAAGGTG 1578
|||| |||.||||||..|.|||.|||||.|||||.|||||.|||||.|||
BL00331___lcf 1535 AGAAGGAATTGGACGAATATGCCAGATCGCGTCTCGCTCCTTATAAAGTG 1584
BSNT_04168___ 1579 CCCAAAGCCTATGACTTCAGAAAGGAGTTGCCGAAAACGGCGGTGGGAAA 1628
||.||||..||.||.|||||..|.||..|.||||||||||||||.|||||
BL00331___lcf 1585 CCAAAAGTATACGAGTTCAGGGACGAACTTCCGAAAACGGCGGTCGGAAA 1634
BSNT_04168___ 1629 AATTTTAAGAAG-GCGTTTAC-TTGAAGAAGAAA----------CCGAAA 1666
.||||||||||| |||.| | ||.||||.|||| |.||
BL00331___lcf 1635 GATTTTAAGAAGAGCGCT--CGTTCAAGAGGAAAAGACCGGCGTCTGA-- 1680
BSNT_04168___ 1667 ATCATCATATCAAATAA 1683
BL00331___lcf 1680 ----------------- 1680
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