Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04149 and BL00322
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:13
# Commandline: needle
# -asequence dna-align/BSNT_04149___sdhA.1.5803.seq
# -bsequence dna-align/BL00322___sdhA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04149___sdhA-BL00322___sdhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04149___sdhA-BL00322___sdhA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04149___sdhA
# 2: BL00322___sdhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1774
# Identity: 1435/1774 (80.9%)
# Similarity: 1435/1774 (80.9%)
# Gaps: 23/1774 ( 1.3%)
# Score: 5796.5
#
#
#=======================================
BSNT_04149___ 1 ATGAGTCAA-TCAAGCATTATCGTAGTCGGCGGGGGTCTTGCCGGCCTCA 49
||||| ||| ||||||||.|||||.||||||||.||.||.||.||.||.|
BL00322___sdh 1 ATGAG-CAATTCAAGCATCATCGTTGTCGGCGGAGGACTAGCGGGTCTGA 49
BSNT_04149___ 50 TGGCGACAATTAAAGCAGCGGAATCAGG----AATGGCGGTTAAGCTGTT 95
|||||||.||||||||.||||||.|||| ||| ||.||.||.||
BL00322___sdh 50 TGGCGACCATTAAAGCTGCGGAAGCAGGAACAAAT----GTAAAACTATT 95
BSNT_04149___ 96 TTCCATCGTTCCTGTCAAACGTTCTCATTCGGTTTGTGCGCAAGGCGGCA 145
|||.||||||||.||.||.||.||.|||||.||.||||||||.|||||.|
BL00322___sdh 96 TTCGATCGTTCCCGTTAAGCGCTCACATTCCGTATGTGCGCAGGGCGGAA 145
BSNT_04149___ 146 TAAACGGAGCGGTCAATACAAAAGGGGAAGGTGACTCTCCGTGGGAACAT 195
|.|||||||||||||||||||||||.|||||.|||||.||.|||||.|||
BL00322___sdh 146 TCAACGGAGCGGTCAATACAAAAGGTGAAGGAGACTCCCCATGGGAGCAT 195
BSNT_04149___ 196 TTTGATGACACGGTATACGGGGGAGACTTTCTTGCCAACCAGCCGCCGGT 245
|||||.||||||||.|||||.||.||||||||.||.||||||||||||||
BL00322___sdh 196 TTTGACGACACGGTGTACGGAGGCGACTTTCTGGCGAACCAGCCGCCGGT 245
BSNT_04149___ 246 CAAGGCGATGTGTGAAGCGGCGCCTTCGATCATCCACTTATTAGACCGGA 295
|||.||||||||||||||||||||.||||||||.||.||..|.|||||.|
BL00322___sdh 246 CAAAGCGATGTGTGAAGCGGCGCCGTCGATCATTCATTTGCTTGACCGCA 295
BSNT_04149___ 296 TGGGCGTCATGTTTAACCGGACGCCTGAAGGCCTGCTTGATTTCCGCCGA 345
|||||||||||||||||.|.|||||||||||.||||||||.|||||.||.
BL00322___sdh 296 TGGGCGTCATGTTTAACAGAACGCCTGAAGGGCTGCTTGACTTCCGGCGC 345
BSNT_04149___ 346 TTCGGGGGTACACAGCACCACAGAACTGCTTATGCTGGTGCGACGACGGG 395
|||||.||.||.|||||.||||||||.||.|||||.||.||||||||.||
BL00322___sdh 346 TTCGGAGGAACCCAGCATCACAGAACGGCATATGCGGGGGCGACGACCGG 395
BSNT_04149___ 396 ACAGCAGCTGCTT-TACGCACTGGACGAGCAAGTGCGCAGATACGAAGTT 444
||||||||| ||| |||||.|||||.|||||.||.|||.|.|.|||||||
BL00322___sdh 396 ACAGCAGCT-CTTGTACGCGCTGGATGAGCAGGTTCGCCGCTTCGAAGTT 444
BSNT_04149___ 445 GCGGGTCTGGTCACAAAATACGAAGGTTGGGAATTCCTTGGCGCTGTTTT 494
|..||.||.||..|.|||||.|||||.|||||.||.||.||.||.|||.|
BL00322___sdh 445 GAAGGGCTCGTTTCGAAATATGAAGGCTGGGAGTTTCTCGGAGCCGTTCT 494
BSNT_04149___ 495 AGATGATGACAGAACCTGCCGCGGAATTGTTGCACAAAACCTGACAAACA 544
.||||||||||..||.|||.|.||.||.||.||.||||||.|.||.|..|
BL00322___sdh 495 TGATGATGACAATACGTGCAGGGGCATCGTCGCCCAAAACTTAACGACGA 544
BSNT_04149___ 545 TGCAAATTGAATCTTTCCGTTCAGACGCTGTCATTATGGCGACGGGCGGA 594
||.||||.||.||.||||||||.|||||.|||||.||||||||.||.||.
BL00322___sdh 545 TGGAAATCGAGTCGTTCCGTTCGGACGCAGTCATCATGGCGACCGGGGGG 594
BSNT_04149___ 595 CCGGGAATCATCTTTGGAAAATCAACGAACTCCATGATTAATACAGGATC 644
|||||.||||||||.||||||||.||||||||.|||||.|||||.|||||
BL00322___sdh 595 CCGGGCATCATCTTCGGAAAATCGACGAACTCGATGATCAATACCGGATC 644
BSNT_04149___ 645 TGCTGCATCAATCGTTTATCAGCAGGGAGCGTATTATGCAAACGGAGAAT 694
.||.||.||.||||||||.||||||||.||.||.|||||.||||||||.|
BL00322___sdh 645 AGCCGCTTCGATCGTTTACCAGCAGGGTGCTTACTATGCGAACGGAGAGT 694
BSNT_04149___ 695 TCATTCAAATCCACCCGACAGCCATACCGGGCGATGACAAATTAAGACTG 744
||||.||.|||||.|||||.|||||.||.||.||.|||||..|..|.|||
BL00322___sdh 695 TCATCCAGATCCATCCGACCGCCATTCCTGGAGACGACAAGCTGCGGCTG 744
BSNT_04149___ 745 ATGAGTGAATCAGCGCGTGGTGAAGGCGGTCGCGTGTGGACATATAAAGA 794
|||||.|||||.|||||.|||||||||||.||.||.|||||.||||||||
BL00322___sdh 745 ATGAGCGAATCGGCGCGCGGTGAAGGCGGACGAGTCTGGACGTATAAAGA 794
BSNT_04149___ 795 CGGCAAACCTTGGTATTTCCTGGAGGAAAAATATCCGGCATACGGAAACC 844
||||||.||||||||||||||.||.||.||||||||||||||.|||||||
BL00322___sdh 795 CGGCAAGCCTTGGTATTTCCTCGAAGAGAAATATCCGGCATATGGAAACC 844
BSNT_04149___ 845 TGGTGCCGCGTGATATTGCGACACGCGAAATATTTGATGTGTGTGTGAAC 894
|.||||||||||||||||||||.||.|||||||||||||||||.||.|..
BL00322___sdh 845 TTGTGCCGCGTGATATTGCGACGCGTGAAATATTTGATGTGTGCGTCAGA 894
BSNT_04149___ 895 CAGAAGCTCGGCATTAACGGTGAAAACATGGTATATCTCGATCTGTCTCA 944
||.|||||||||||.|||||.|||||||||||.|||||||||||.||.||
BL00322___sdh 895 CAAAAGCTCGGCATCAACGGCGAAAACATGGTTTATCTCGATCTTTCCCA 944
BSNT_04149___ 945 TAAAGATCCGAAAGAGCTTGATATTAAGCTTGGCGGCATCATTGAGATTT 994
.|||||||||||.||..|.||.||.|||||.|||||.||||||||.||.|
BL00322___sdh 945 CAAAGATCCGAAGGAATTGGACATCAAGCTGGGCGGAATCATTGAAATCT 994
BSNT_04149___ 995 ACGAGAAATTCATGGGAGACGACCCGCGTAAGCTTCCAATGAAAATCTTC 1044
|.||.|||||||||||.|||||.|||||.|||||.||.||||||||||||
BL00322___sdh 995 ATGAAAAATTCATGGGTGACGATCCGCGCAAGCTGCCGATGAAAATCTTC 1044
BSNT_04149___ 1045 CCGGCGGTCCATTATTCTATGGGCGGTTTATGGGTGGATTACGATCAAAT 1094
||.|||||.||.||.||.||||||||..|.|||||.||.||||||||.||
BL00322___sdh 1045 CCTGCGGTTCACTACTCAATGGGCGGACTTTGGGTCGACTACGATCAGAT 1094
BSNT_04149___ 1095 GACAAACATCCCTGGACTGTTTGCGGCTGGGGAATGTGATTATTCTATGC 1144
|||.|||||.||||||||||||||.||.||.|||||.||.|||||.||||
BL00322___sdh 1095 GACCAACATTCCTGGACTGTTTGCCGCGGGAGAATGCGACTATTCGATGC 1144
BSNT_04149___ 1145 ACGGCGGCAACCGCTTGGGAGCGAACTCCTTGCTGTCTGCGATTTACGGA 1194
|||||||.||||||.|||||||||||||..|..||||.||.||||||||.
BL00322___sdh 1145 ACGGCGGAAACCGCCTGGGAGCGAACTCGCTCTTGTCAGCCATTTACGGC 1194
BSNT_04149___ 1195 GGCATGGTGGCCGGACCGAATGCGGTGAAATATGTAAACGGCTTAGAATC 1244
|||||||||||.||.|||||.||.||..||||..|..|.||..|.|||.|
BL00322___sdh 1195 GGCATGGTGGCAGGTCCGAAAGCCGTTGAATACATTCAAGGTCTCGAAAC 1244
BSNT_04149___ 1245 TTCAGCGGAAGACATGTCTTCATCTTTATTCGACGCTCACGTTAAGAAAG 1294
.||.||.|||||..|||||||.||..|.|||||.||..||||.||.||.|
BL00322___sdh 1245 ATCCGCAGAAGATCTGTCTTCTTCCGTTTTCGATGCATACGTCAAAAAGG 1294
BSNT_04149___ 1295 AAGAAGAAAAATGGGCTGACATTATGAGTATGGACGGAACCGAAAATGCC 1344
||||||||||.|||||||||||.||||..||||||||.|..||||||||.
BL00322___sdh 1295 AAGAAGAAAAGTGGGCTGACATAATGAAAATGGACGGCAATGAAAATGCT 1344
BSNT_04149___ 1345 TATGTTCTTCACAAAGAGCTCGGTGAGTGGATGACGGCGAACGTAACGGT 1394
|||||.|||||.|||||||||||.||.||||||||.|..|||||.|||||
BL00322___sdh 1345 TATGTCCTTCATAAAGAGCTCGGCGAATGGATGACAGACAACGTGACGGT 1394
BSNT_04149___ 1395 TGTCCGCCATAATGACAAGCTTTTGAAAACGGATGACAAAATTCAGGAGT 1444
.||.|||.|.|||||||||||..|||||||||||||.|||||.||.|||.
BL00322___sdh 1395 CGTGCGCTACAATGACAAGCTGCTGAAAACGGATGAAAAAATCCAAGAGC 1444
BSNT_04149___ 1445 TAATG--GAGCGCTTCAAAAAGATCAACATCAATGACACGACAAAATGGA 1492
| || |||||||.|..|||.|||||.|||||.||.|||.|||||||||
BL00322___sdh 1445 T--TGCCGAGCGCTACCGAAACATCAATATCAACGATACGGCAAAATGGA 1492
BSNT_04149___ 1493 GCAACCAGGGAGCGATGTTCACACGCCAGTTCT-CA-AACATGCTTCAGC 1540
||||||||||.||..|.|||||.|||||| || || ||||||||.||..
BL00322___sdh 1493 GCAACCAGGGCGCCGTATTCACGCGCCAG--CTGCACAACATGCTGCAAT 1540
BSNT_04149___ 1541 TTGCTAGGGTGATTACCCTTGGCGCATACAACCGTAATGAAAGCCGGGGC 1590
|.||..|||||||.||.||.||.|||||||||||.|||||.|||||.|||
BL00322___sdh 1541 TGGCACGGGTGATCACGCTCGGTGCATACAACCGGAATGAGAGCCGCGGC 1590
BSNT_04149___ 1591 GCCCATTATAAACCGGATTATCCTGAACGTAATGATGATGAATGGCTCAA 1640
|||||||||||||||||||..||||||||||||||.||.||||||||.||
BL00322___sdh 1591 GCCCATTATAAACCGGATTTCCCTGAACGTAATGACGAGGAATGGCTGAA 1640
BSNT_04149___ 1641 AACAACAATGGCTAAACATGTAAGCCCGTATGAAGCGCCGGAATTTGAGT 1690
||||||||||||.|||||||.|.||...|.||||||.|||.||||..|.|
BL00322___sdh 1641 AACAACAATGGCGAAACATGCAGGCGATTTTGAAGCCCCGAAATTCCATT 1690
BSNT_04149___ 1691 ATCAGGATGTCGATGTATCACTGATAACGCCTCGGAAACGGGATTACTCG 1740
||.|||||||||||||.|||.|.||..|.||.||.|||||||||||||||
BL00322___sdh 1691 ATGAGGATGTCGATGTTTCATTAATCGCACCGCGTAAACGGGATTACTCG 1740
BSNT_04149___ 1741 AAGAAGAAGGTGGCGAAATAA--- 1761
|||||.|||||||||||||.|
BL00322___sdh 1741 AAGAAAAAGGTGGCGAAATCATGA 1764
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