Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04149 and BL00322

See Amino acid alignment / Visit BSNT_04149 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:13
# Commandline: needle
#    -asequence dna-align/BSNT_04149___sdhA.1.5803.seq
#    -bsequence dna-align/BL00322___sdhA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04149___sdhA-BL00322___sdhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04149___sdhA-BL00322___sdhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04149___sdhA
# 2: BL00322___sdhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1774
# Identity:    1435/1774 (80.9%)
# Similarity:  1435/1774 (80.9%)
# Gaps:          23/1774 ( 1.3%)
# Score: 5796.5
# 
#
#=======================================

BSNT_04149___      1 ATGAGTCAA-TCAAGCATTATCGTAGTCGGCGGGGGTCTTGCCGGCCTCA     49
                     ||||| ||| ||||||||.|||||.||||||||.||.||.||.||.||.|
BL00322___sdh      1 ATGAG-CAATTCAAGCATCATCGTTGTCGGCGGAGGACTAGCGGGTCTGA     49

BSNT_04149___     50 TGGCGACAATTAAAGCAGCGGAATCAGG----AATGGCGGTTAAGCTGTT     95
                     |||||||.||||||||.||||||.||||    |||    ||.||.||.||
BL00322___sdh     50 TGGCGACCATTAAAGCTGCGGAAGCAGGAACAAAT----GTAAAACTATT     95

BSNT_04149___     96 TTCCATCGTTCCTGTCAAACGTTCTCATTCGGTTTGTGCGCAAGGCGGCA    145
                     |||.||||||||.||.||.||.||.|||||.||.||||||||.|||||.|
BL00322___sdh     96 TTCGATCGTTCCCGTTAAGCGCTCACATTCCGTATGTGCGCAGGGCGGAA    145

BSNT_04149___    146 TAAACGGAGCGGTCAATACAAAAGGGGAAGGTGACTCTCCGTGGGAACAT    195
                     |.|||||||||||||||||||||||.|||||.|||||.||.|||||.|||
BL00322___sdh    146 TCAACGGAGCGGTCAATACAAAAGGTGAAGGAGACTCCCCATGGGAGCAT    195

BSNT_04149___    196 TTTGATGACACGGTATACGGGGGAGACTTTCTTGCCAACCAGCCGCCGGT    245
                     |||||.||||||||.|||||.||.||||||||.||.||||||||||||||
BL00322___sdh    196 TTTGACGACACGGTGTACGGAGGCGACTTTCTGGCGAACCAGCCGCCGGT    245

BSNT_04149___    246 CAAGGCGATGTGTGAAGCGGCGCCTTCGATCATCCACTTATTAGACCGGA    295
                     |||.||||||||||||||||||||.||||||||.||.||..|.|||||.|
BL00322___sdh    246 CAAAGCGATGTGTGAAGCGGCGCCGTCGATCATTCATTTGCTTGACCGCA    295

BSNT_04149___    296 TGGGCGTCATGTTTAACCGGACGCCTGAAGGCCTGCTTGATTTCCGCCGA    345
                     |||||||||||||||||.|.|||||||||||.||||||||.|||||.||.
BL00322___sdh    296 TGGGCGTCATGTTTAACAGAACGCCTGAAGGGCTGCTTGACTTCCGGCGC    345

BSNT_04149___    346 TTCGGGGGTACACAGCACCACAGAACTGCTTATGCTGGTGCGACGACGGG    395
                     |||||.||.||.|||||.||||||||.||.|||||.||.||||||||.||
BL00322___sdh    346 TTCGGAGGAACCCAGCATCACAGAACGGCATATGCGGGGGCGACGACCGG    395

BSNT_04149___    396 ACAGCAGCTGCTT-TACGCACTGGACGAGCAAGTGCGCAGATACGAAGTT    444
                     ||||||||| ||| |||||.|||||.|||||.||.|||.|.|.|||||||
BL00322___sdh    396 ACAGCAGCT-CTTGTACGCGCTGGATGAGCAGGTTCGCCGCTTCGAAGTT    444

BSNT_04149___    445 GCGGGTCTGGTCACAAAATACGAAGGTTGGGAATTCCTTGGCGCTGTTTT    494
                     |..||.||.||..|.|||||.|||||.|||||.||.||.||.||.|||.|
BL00322___sdh    445 GAAGGGCTCGTTTCGAAATATGAAGGCTGGGAGTTTCTCGGAGCCGTTCT    494

BSNT_04149___    495 AGATGATGACAGAACCTGCCGCGGAATTGTTGCACAAAACCTGACAAACA    544
                     .||||||||||..||.|||.|.||.||.||.||.||||||.|.||.|..|
BL00322___sdh    495 TGATGATGACAATACGTGCAGGGGCATCGTCGCCCAAAACTTAACGACGA    544

BSNT_04149___    545 TGCAAATTGAATCTTTCCGTTCAGACGCTGTCATTATGGCGACGGGCGGA    594
                     ||.||||.||.||.||||||||.|||||.|||||.||||||||.||.||.
BL00322___sdh    545 TGGAAATCGAGTCGTTCCGTTCGGACGCAGTCATCATGGCGACCGGGGGG    594

BSNT_04149___    595 CCGGGAATCATCTTTGGAAAATCAACGAACTCCATGATTAATACAGGATC    644
                     |||||.||||||||.||||||||.||||||||.|||||.|||||.|||||
BL00322___sdh    595 CCGGGCATCATCTTCGGAAAATCGACGAACTCGATGATCAATACCGGATC    644

BSNT_04149___    645 TGCTGCATCAATCGTTTATCAGCAGGGAGCGTATTATGCAAACGGAGAAT    694
                     .||.||.||.||||||||.||||||||.||.||.|||||.||||||||.|
BL00322___sdh    645 AGCCGCTTCGATCGTTTACCAGCAGGGTGCTTACTATGCGAACGGAGAGT    694

BSNT_04149___    695 TCATTCAAATCCACCCGACAGCCATACCGGGCGATGACAAATTAAGACTG    744
                     ||||.||.|||||.|||||.|||||.||.||.||.|||||..|..|.|||
BL00322___sdh    695 TCATCCAGATCCATCCGACCGCCATTCCTGGAGACGACAAGCTGCGGCTG    744

BSNT_04149___    745 ATGAGTGAATCAGCGCGTGGTGAAGGCGGTCGCGTGTGGACATATAAAGA    794
                     |||||.|||||.|||||.|||||||||||.||.||.|||||.||||||||
BL00322___sdh    745 ATGAGCGAATCGGCGCGCGGTGAAGGCGGACGAGTCTGGACGTATAAAGA    794

BSNT_04149___    795 CGGCAAACCTTGGTATTTCCTGGAGGAAAAATATCCGGCATACGGAAACC    844
                     ||||||.||||||||||||||.||.||.||||||||||||||.|||||||
BL00322___sdh    795 CGGCAAGCCTTGGTATTTCCTCGAAGAGAAATATCCGGCATATGGAAACC    844

BSNT_04149___    845 TGGTGCCGCGTGATATTGCGACACGCGAAATATTTGATGTGTGTGTGAAC    894
                     |.||||||||||||||||||||.||.|||||||||||||||||.||.|..
BL00322___sdh    845 TTGTGCCGCGTGATATTGCGACGCGTGAAATATTTGATGTGTGCGTCAGA    894

BSNT_04149___    895 CAGAAGCTCGGCATTAACGGTGAAAACATGGTATATCTCGATCTGTCTCA    944
                     ||.|||||||||||.|||||.|||||||||||.|||||||||||.||.||
BL00322___sdh    895 CAAAAGCTCGGCATCAACGGCGAAAACATGGTTTATCTCGATCTTTCCCA    944

BSNT_04149___    945 TAAAGATCCGAAAGAGCTTGATATTAAGCTTGGCGGCATCATTGAGATTT    994
                     .|||||||||||.||..|.||.||.|||||.|||||.||||||||.||.|
BL00322___sdh    945 CAAAGATCCGAAGGAATTGGACATCAAGCTGGGCGGAATCATTGAAATCT    994

BSNT_04149___    995 ACGAGAAATTCATGGGAGACGACCCGCGTAAGCTTCCAATGAAAATCTTC   1044
                     |.||.|||||||||||.|||||.|||||.|||||.||.||||||||||||
BL00322___sdh    995 ATGAAAAATTCATGGGTGACGATCCGCGCAAGCTGCCGATGAAAATCTTC   1044

BSNT_04149___   1045 CCGGCGGTCCATTATTCTATGGGCGGTTTATGGGTGGATTACGATCAAAT   1094
                     ||.|||||.||.||.||.||||||||..|.|||||.||.||||||||.||
BL00322___sdh   1045 CCTGCGGTTCACTACTCAATGGGCGGACTTTGGGTCGACTACGATCAGAT   1094

BSNT_04149___   1095 GACAAACATCCCTGGACTGTTTGCGGCTGGGGAATGTGATTATTCTATGC   1144
                     |||.|||||.||||||||||||||.||.||.|||||.||.|||||.||||
BL00322___sdh   1095 GACCAACATTCCTGGACTGTTTGCCGCGGGAGAATGCGACTATTCGATGC   1144

BSNT_04149___   1145 ACGGCGGCAACCGCTTGGGAGCGAACTCCTTGCTGTCTGCGATTTACGGA   1194
                     |||||||.||||||.|||||||||||||..|..||||.||.||||||||.
BL00322___sdh   1145 ACGGCGGAAACCGCCTGGGAGCGAACTCGCTCTTGTCAGCCATTTACGGC   1194

BSNT_04149___   1195 GGCATGGTGGCCGGACCGAATGCGGTGAAATATGTAAACGGCTTAGAATC   1244
                     |||||||||||.||.|||||.||.||..||||..|..|.||..|.|||.|
BL00322___sdh   1195 GGCATGGTGGCAGGTCCGAAAGCCGTTGAATACATTCAAGGTCTCGAAAC   1244

BSNT_04149___   1245 TTCAGCGGAAGACATGTCTTCATCTTTATTCGACGCTCACGTTAAGAAAG   1294
                     .||.||.|||||..|||||||.||..|.|||||.||..||||.||.||.|
BL00322___sdh   1245 ATCCGCAGAAGATCTGTCTTCTTCCGTTTTCGATGCATACGTCAAAAAGG   1294

BSNT_04149___   1295 AAGAAGAAAAATGGGCTGACATTATGAGTATGGACGGAACCGAAAATGCC   1344
                     ||||||||||.|||||||||||.||||..||||||||.|..||||||||.
BL00322___sdh   1295 AAGAAGAAAAGTGGGCTGACATAATGAAAATGGACGGCAATGAAAATGCT   1344

BSNT_04149___   1345 TATGTTCTTCACAAAGAGCTCGGTGAGTGGATGACGGCGAACGTAACGGT   1394
                     |||||.|||||.|||||||||||.||.||||||||.|..|||||.|||||
BL00322___sdh   1345 TATGTCCTTCATAAAGAGCTCGGCGAATGGATGACAGACAACGTGACGGT   1394

BSNT_04149___   1395 TGTCCGCCATAATGACAAGCTTTTGAAAACGGATGACAAAATTCAGGAGT   1444
                     .||.|||.|.|||||||||||..|||||||||||||.|||||.||.|||.
BL00322___sdh   1395 CGTGCGCTACAATGACAAGCTGCTGAAAACGGATGAAAAAATCCAAGAGC   1444

BSNT_04149___   1445 TAATG--GAGCGCTTCAAAAAGATCAACATCAATGACACGACAAAATGGA   1492
                     |  ||  |||||||.|..|||.|||||.|||||.||.|||.|||||||||
BL00322___sdh   1445 T--TGCCGAGCGCTACCGAAACATCAATATCAACGATACGGCAAAATGGA   1492

BSNT_04149___   1493 GCAACCAGGGAGCGATGTTCACACGCCAGTTCT-CA-AACATGCTTCAGC   1540
                     ||||||||||.||..|.|||||.||||||  || || ||||||||.||..
BL00322___sdh   1493 GCAACCAGGGCGCCGTATTCACGCGCCAG--CTGCACAACATGCTGCAAT   1540

BSNT_04149___   1541 TTGCTAGGGTGATTACCCTTGGCGCATACAACCGTAATGAAAGCCGGGGC   1590
                     |.||..|||||||.||.||.||.|||||||||||.|||||.|||||.|||
BL00322___sdh   1541 TGGCACGGGTGATCACGCTCGGTGCATACAACCGGAATGAGAGCCGCGGC   1590

BSNT_04149___   1591 GCCCATTATAAACCGGATTATCCTGAACGTAATGATGATGAATGGCTCAA   1640
                     |||||||||||||||||||..||||||||||||||.||.||||||||.||
BL00322___sdh   1591 GCCCATTATAAACCGGATTTCCCTGAACGTAATGACGAGGAATGGCTGAA   1640

BSNT_04149___   1641 AACAACAATGGCTAAACATGTAAGCCCGTATGAAGCGCCGGAATTTGAGT   1690
                     ||||||||||||.|||||||.|.||...|.||||||.|||.||||..|.|
BL00322___sdh   1641 AACAACAATGGCGAAACATGCAGGCGATTTTGAAGCCCCGAAATTCCATT   1690

BSNT_04149___   1691 ATCAGGATGTCGATGTATCACTGATAACGCCTCGGAAACGGGATTACTCG   1740
                     ||.|||||||||||||.|||.|.||..|.||.||.|||||||||||||||
BL00322___sdh   1691 ATGAGGATGTCGATGTTTCATTAATCGCACCGCGTAAACGGGATTACTCG   1740

BSNT_04149___   1741 AAGAAGAAGGTGGCGAAATAA---   1761
                     |||||.|||||||||||||.|   
BL00322___sdh   1741 AAGAAAAAGGTGGCGAAATCATGA   1764


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