Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04143 and BL00316

See Amino acid alignment / Visit BSNT_04143 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:12
# Commandline: needle
#    -asequence dna-align/BSNT_04143___ysmB.1.5803.seq
#    -bsequence dna-align/BL00316___ysmB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04143___ysmB-BL00316___ysmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04143___ysmB-BL00316___ysmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04143___ysmB
# 2: BL00316___ysmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 447
# Identity:     345/447 (77.2%)
# Similarity:   345/447 (77.2%)
# Gaps:           9/447 ( 2.0%)
# Score: 1301.0
# 
#
#=======================================

BSNT_04143___      1 ATGACATCAAA---ACCTTTGGAGCATGTTGCGGATATTGAAAAGTCACT     47
                     ||||..||.||   ..|||||.|.||..|.|||||.||||||||.|||||
BL00316___ysm      1 ATGAATTCGAATGCTTCTTTGAATCACATAGCGGACATTGAAAAATCACT     50

BSNT_04143___     48 CCGCCACATTGCCGCGATCATTAAGCAAAAAGGACGAGAAATCCTTAACC     97
                     ||||||.|||||.|..||||||||.|||||||||.|||||||.||.|.||
BL00316___ysm     51 CCGCCATATTGCGGGCATCATTAAACAAAAAGGAAGAGAAATTCTCACCC    100

BSNT_04143___     98 AATATGCGATTACGCCGCCGCAATTTGTCGG-CTTGCAATGGCTTTATGA    146
                     |||||.|||||||.||.||.||.|||||||| ||| ||||||||.|||||
BL00316___ysm    101 AATATACGATTACCCCTCCCCAGTTTGTCGGTCTT-CAATGGCTGTATGA    149

BSNT_04143___    147 ATTAGGAGATATGACAATCGGTGAATTATCGGGCAAA--ATGTATCTGGC    194
                     ||..||.||||||||.|||||.||.|||||  .||||  |||||.|||||
BL00316___ysm    150 ATACGGGGATATGACGATCGGCGAGTTATC--ACAAAAGATGTACCTGGC    197

BSNT_04143___    195 ATGCAGCACGACAACGGACTTAATCGACCGCATGCAAAAAAATGAGCTTG    244
                     .||||||||.||||||||.|||||.|||||.|||.|.|||||..|.||.|
BL00316___ysm    198 GTGCAGCACCACAACGGATTTAATTGACCGAATGGAGAAAAACAACCTCG    247

BSNT_04143___    245 TGGAGCGGGTCAAGGACCCGGCGGACAGACGTGTTGTCCGGATACATCTG    294
                     |.||.|||||.||.||.|||.|.|||||.||.||.|||||.||.|||||.
BL00316___ysm    248 TTGAACGGGTTAAAGATCCGTCCGACAGGCGCGTAGTCCGCATTCATCTT    297

BSNT_04143___    295 CTGCCTGAAGGAGAACGGATTATCCAAGAGGTCATTACAAAAAGACAGGA    344
                     ||..|.||||||||.|||||.|||||.|||||||||..||||||.|||||
BL00316___ysm    298 CTATCGGAAGGAGAGCGGATCATCCAGGAGGTCATTCAAAAAAGGCAGGA    347

BSNT_04143___    345 ATATCTGCGTGATATGTTCGAATCGTTTACAGATGAAGAAATAGCCATCT    394
                     .|||.|....||.|||||.||..|||||.|.||.|||||||.||||...|
BL00316___ysm    348 CTATTTAGAAGACATGTTAGAGGCGTTTTCCGAGGAAGAAACAGCCGCGT    397

BSNT_04143___    395 TCGAAAAATCTTTGATGAAACTGCAGCATGAAATGAAGAGAAAATGA    441
                     |.|||||||..||.||.|||||.|||||.||||||||.|||||||||
BL00316___ysm    398 TTGAAAAATTATTAATTAAACTTCAGCAGGAAATGAACAGAAAATGA    444


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