Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03914 and BL00300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:55
# Commandline: needle
# -asequence dna-align/BSNT_03914___yraB.1.5803.seq
# -bsequence dna-align/BL00300___yraB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03914___yraB-BL00300___yraB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03914___yraB-BL00300___yraB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03914___yraB
# 2: BL00300___yraB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 512
# Identity: 248/512 (48.4%)
# Similarity: 248/512 (48.4%)
# Gaps: 205/512 (40.0%)
# Score: 532.0
#
#
#=======================================
BSNT_03914___ 1 ----------------ATGAATATTGCTCAGGTGGCAAAGCAGTTTGGCC 34
|.||| .|||| ||..||||.||.||.|||
BL00300___yra 1 ATGGGGTATTCTATAAAAGAA-GTTGC-----TGAAAAAGTAGGTTTGCC 44
BSNT_03914___ 35 TGACAGCCGCA-ACACTCCGATATTACGAACGTGTAGGATTAATC--CCG 81
| ||| || ||||||||||||||.|||...|.||| || |.|
BL00300___yra 45 T-ACA----CATACACTCCGATATTATGAAAAAGAAGG-----TCTTCTG 84
BSNT_03914___ 82 CCTGT-----AAA---ACGAAA----AAACAGCGGCATTCGCGACTATGA 119
|||.| ||| |||.|| ||| |.||||| |.|||
BL00300___yra 85 CCTTTTATTAAAAGAGACGCAAATGGAAA---CCGCATT------TTTGA 125
BSNT_03914___ 120 TGAAGAAGA--TATCAAATGGATTGAATTCATTAAATGCATGCGAAA--- 164
.|||.|||| |.|| ||||.|.||..|..|.|.||||.||||.||
BL00300___yra 126 AGAAAAAGACTTGTC--ATGGTTGGAGCTTGTGATATGCTTGCGGAAAAC 173
BSNT_03914___ 165 ------TGCGGGACTATCGATAGAAGCGCTAATTGAATATAC----AA-- 202
|||| ||.||| |||| ||| ||
BL00300___yra 174 TGACATTGCG---CTTTCG---------------GAAT-TACGGGAAATC 204
BSNT_03914___ 203 --CATTATTTACC----GAAGGTGACCGTAC--AGTAGAAGCTCGAAAAA 244
|| |||||.| |||||.||..|.|| ..|.|||||.|.||.||
BL00300___yra 205 GTCA--ATTTAACAAAAGAAGGAGATTGGACCATCTCGAAGCGCAAACAA 252
BSNT_03914___ 245 ATATCCTGGCTGACGAACGACAGCGGCTGATAGAGAAGCGGAAAGAAATT 294
||| || |||..||| |||.|||| |||.|
BL00300___yra 253 ATA--CT---TGAAAAAC-----------ATAAAGAA--------AAAAT 278
BSNT_03914___ 295 G-ATGAAA--CAA---------------------TTAAAA---GATTAGA 317
| .||||| ||| |||||| |||.||
BL00300___yra 279 GCTTGAAAAGCAAAGAGTCCTGGAACGCGCCTTTTTAAAAATCGATGAG- 327
BSNT_03914___ 318 CACAAAAATTAAAGATTATGATGGGAAATTGCGCGAAAACGAGGCAAAAC 367
|||||.|...|.|||||||| ||| ||..||||
BL00300___yra 328 ----AAAATCATGTACTATGATGG---ATT-----------AGAAAAAA- 358
BSNT_03914___ 368 TCAAAAGCAGGCCTAAAACG-----GAAAGTCTTCACGGATCAGTGGAGC 412
|.||.||||| ||.| ||||| ||||| |.
BL00300___yra 359 --AGAATCAGGC----AATGTCCTTGAAAG------CGGAT-------GA 389
BSNT_03914___ 413 AAAG-AAGGTAG 423
|||| ||
BL00300___yra 390 AAAGTAA----- 396
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