Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02035 and BL00286

See Amino acid alignment / Visit BSNT_02035 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:32
# Commandline: needle
#    -asequence dna-align/BSNT_02035___manR.1.5803.seq
#    -bsequence dna-align/BL00286___manR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02035___manR-BL00286___manR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02035___manR-BL00286___manR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02035___manR
# 2: BL00286___manR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1987
# Identity:    1543/1987 (77.7%)
# Similarity:  1543/1987 (77.7%)
# Gaps:          83/1987 ( 4.2%)
# Score: 5939.5
# 
#
#=======================================

BSNT_02035___      1 ATGGAATACATAAATACAAGACAAAAAGAGATTTTGTATCTGTTGTTATC     50
                              ||.|||||.||.||||||||.|||.||.|||||||||||||
BL00286___man      1 ---------ATGAATACGAGGCAAAAAGACATTCTGAATCTGTTGTTATC     41

BSNT_02035___     51 TGAACCTGATGACTATTTAGTTGTGCAAGATTTCGCAGATAGGGTACAGT    100
                     |||||||||||||||||||||.||.||||||||||||||.||||||.|||
BL00286___man     42 TGAACCTGATGACTATTTAGTCGTACAAGATTTCGCAGACAGGGTAAAGT     91

BSNT_02035___    101 GTTCTGAAAAAACAATCCGGAATGATTTGAAAGTGATCGAGGATTATCTC    150
                     |||||||||||||.|||.|.||||||.|||||..|||.||.||.||||||
BL00286___man     92 GTTCTGAAAAAACGATCAGAAATGATCTGAAAACGATTGAAGACTATCTC    141

BSNT_02035___    151 AATGAGCATTCTCATGCACAGCTTATTCGAAAACCAGGGTTGGGCGTTTA    200
                     |||.||||||||.||||.||..|.|||||.|||||.||.|||||||||||
BL00286___man    142 AATCAGCATTCTGATGCTCAATTAATTCGCAAACCGGGATTGGGCGTTTA    191

BSNT_02035___    201 TTTATATATAGAAGAACAAGAAAG-GACCTGGCTAAGCCAACAATTACAT    249
                     |||..||||.|||||.|||||||| |.|| |..||||||..||||||.||
BL00286___man    192 TTTGAATATTGAAGATCAAGAAAGAGTCC-GTTTAAGCCGGCAATTATAT    240

BSNT_02035___    250 ACTGAACATTTTTCTTCTAGGCAGCGGAG--------CGATGAAGAAAGA    291
                     ||.||||||        .|.||.||..||        |||||||||||||
BL00286___man    241 ACCGAACAT--------CACGCCGCACAGCAGCTACCCGATGAAGAAAGA    282

BSNT_02035___    292 ATGCTGCACATTGCTTATGACTTATTAATGAATCCGAAGCCTGTTTCCGC    341
                     ||||||||.||.||||||.|..|||||||||||||.|||||.|||||.||
BL00286___man    283 ATGCTGCAAATCGCTTATCAGCTATTAATGAATCCAAAGCCGGTTTCTGC    332

BSNT_02035___    342 AAAAGACATTGCTGCTCG-GCATTTTGTCAATCGATCTTCCATAAAAAAG    390
                     ||||||.||.||||| || ||||||..|.|||...||||||||.||||.|
BL00286___man    333 AAAAGAAATGGCTGC-CGAGCATTTCTTGAATAAGTCTTCCATCAAAAGG    381

BSNT_02035___    391 GATTT--ATACGCAGTAGAAGAGTGGCTGAAGCGTTTTGATCTCACGCTG    438
                     |||||  |||  .|.|.||.|..|||||||||||.||||..|||||.|||
BL00286___man    382 GATTTGAATA--AAATTGACGTTTGGCTGAAGCGGTTTGGCCTCACACTG    429

BSNT_02035___    439 GTTTCTAGGCAGCGGCTTGGATTAAAGGTTGAAGGGAACGAAAGAAATAA    488
                     ||.||.|.||||||.||.||.||||||.|.|||||.|..||||.||||||
BL00286___man    430 GTATCCAAGCAGCGCCTCGGTTTAAAGATCGAAGGAAGTGAAAAAAATAA    479

BSNT_02035___    489 AAGAAAGGCATTGGCAAGAATATCTGATTTGATCCACAATACAGCGTTTA    538
                     .|||||.||..||||..|.||.||.||.|||||..||||..|.|.|||||
BL00286___man    480 GAGAAAAGCGCTGGCGCGCATCTCGGAGTTGATTGACAACCCGGAGTTTA    529

BSNT_02035___    539 CCAGCCAATTTATTAAAAGTAAGTTTTTACATTATGAAGTAGACTTTGTG    588
                     |.||||.|||||||||||||||.||||||....|||||||.||.|||||.
BL00286___man    530 CAAGCCGATTTATTAAAAGTAAATTTTTAAGCCATGAAGTGGAATTTGTT    579

BSNT_02035___    589 ACGAAA--GAAATCAAATCACTACAAAAAAAGCATTCCCTCTATTTCACA    636
                     |  |||  ||.||||.||||.|.||||....||||||..|.||||||||.
BL00286___man    580 A--AAAGTGAGATCAGATCATTGCAAAGGCGGCATTCTTTATATTTCACT    627

BSNT_02035___    637 GACGAAACGTTTGAAAGTTTGCTGCTGCATACATTGTTAATGGTCCGCCG    686
                     ||.||||||||.||||.|||.|||.|||||||||||.|.|||.|||||||
BL00286___man    628 GATGAAACGTTCGAAAATTTACTGTTGCATACATTGCTGATGATCCGCCG    677

BSNT_02035___    687 CATCAAAATGAAGCAGCCGAT-TTCATTGTCCCCAAAAGAAATGGCGGCA    735
                     ||||||||||||.|||||||| ..|||| ||.||....|||||.|..|||
BL00286___man    678 CATCAAAATGAAACAGCCGATCACCATT-TCGCCGGGGGAAATCGATGCA    726

BSNT_02035___    736 GTAAAAAAGAAGAAAGAATATCAATGGACATTTGCTTGTTTACAACGGCT    785
                     ||.||||||||.|||||||.|||.|||||.|||||.||||||.|||||||
BL00286___man    727 GTCAAAAAGAAAAAAGAATTTCAGTGGACGTTTGCCTGTTTAAAACGGCT    776

BSNT_02035___    786 CGAACCGGTTTTTGCAATCCGCTTCCCTGAAGAAGAAGCCGTGTACTTAA    835
                     .|||.|.||||||||.||||||||.|||||||||||.|||||.||.||||
BL00286___man    777 GGAAGCTGTTTTTGCGATCCGCTTTCCTGAAGAAGAGGCCGTCTATTTAA    826

BSNT_02035___    836 CATTACATATATTGGGCGGTAAAGTTCGTTATCCA-TTGCAGACAGAAGA    884
                     ||||.||||||||.|||||.||||||||.||.||| |||.| |.|||||.
BL00286___man    827 CATTGCATATATTAGGCGGAAAAGTTCGCTACCCATTTGGA-AAAGAAGG    875

BSNT_02035___    885 GAAC------CTTGAAAATGCTGTGCTTCCTAAGGTTGTAGGGCATTTAA    928
                     |.||      ||.|||||..||.|||||||.||||||||.|...||||||
BL00286___man    876 GGACAGCGGACTGGAAAACCCTTTGCTTCCAAAGGTTGTCGAATATTTAA    925

BSNT_02035___    929 TCAATCGTGTTTCAGAGCTGAAAATGATGGATTTTCATAAGGATCAGGAT    978
                     |||||||.||.||||||.||||||||||||||||.|...||||.|.||.|
BL00286___man    926 TCAATCGCGTATCAGAGTTGAAAATGATGGATTTCCGCGAGGACCGGGTT    975

BSNT_02035___    979 TTGATCAATGGTTTGAACATTCATCTCAATACTGTGCTACAACGGCTGAG   1028
                     |||||||||||.|||||..||||.||.|||||.||..||.|.||||||||
BL00286___man    976 TTGATCAATGGATTGAAAGTTCACCTTAATACCGTTTTAAACCGGCTGAG   1025

BSNT_02035___   1029 CTACGATCTTTCTGTAGCAAATCCTATGCTCAATGACATCAAAAAGATGT   1078
                     |||.||.|||||.|||.|||||||.|||||||||||.||||||||.||||
BL00286___man   1026 CTATGACCTTTCCGTATCAAATCCGATGCTCAATGATATCAAAAAAATGT   1075

BSNT_02035___   1079 ACCCTTATTTGTTCCACCTCATCATTGATGTTTTGGAAGACATCAATCAT   1128
                     ||||||||.||||.||..|..|||||||||.|.|.|||||||||||.||.
BL00286___man   1076 ACCCTTATCTGTTTCATATTGTCATTGATGCTCTTGAAGACATCAACCAA   1125

BSNT_02035___   1129 AC-TTTTGATCTTCAAATTCCTGAGGAAGAGGCAGCATATTTGACATTGC   1177
                     || ||||.| |||...|||||.||||||||.||.||.|||.|||||||||
BL00286___man   1126 ACGTTTTCA-CTTTCGATTCCCGAGGAAGAAGCCGCCTATCTGACATTGC   1174

BSNT_02035___   1178 ATTTTCAGGCAGCGATCGAACGGATGCAGTGCAGCAGC-------GAGAC   1220
                     ||||.||.||.|||||||         ||.||..||||       .||||
BL00286___man   1175 ATTTCCAAGCGGCGATCG---------AGCGCTTCAGCTATGGAAAAGAC   1215

BSNT_02035___   1221 A--CATAAAAAGGCGATTATCGTCTGCCACATGGGGATTGGGATGTCACA   1268
                     |  ||||||||.|||||.|||||.||.||.|||||.||.||.||||||||
BL00286___man   1216 AAGCATAAAAAAGCGATCATCGTTTGTCATATGGGCATCGGAATGTCACA   1265

BSNT_02035___   1269 ATTGCTGCGGACAAAAATTGAACGGAAATGTCATCAAATCGCTGTAATGG   1318
                     ..||||||||||||||||.||||||||||..||.|||||.||.||.||||
BL00286___man   1266 GCTGCTGCGGACAAAAATCGAACGGAAATTCCACCAAATTGCCGTGATGG   1315

BSNT_02035___   1319 CCTGTATTGCAAAGGCCGATTTAAAGGATTATA--TCAAAAAGCATGAGG   1366
                     .|||.||.||.||.||.|||||...|||.||||  .|||.|  .||.|.|
BL00286___man   1316 ACTGCATCGCGAAAGCAGATTTGGCGGACTATACTGCAAGA--TATAAAG   1363

BSNT_02035___   1367 ATATTGATCTTGTCATATCCAC---CATTGCGCTGGAGAATATAACGGTT   1413
                     ||||.||.|||||||||||.||   ||  || ||||||.||.||.|..||
BL00286___man   1364 ATATCGAGCTTGTCATATCAACGGTCA--GC-CTGGAGGATTTATCAATT   1410

BSNT_02035___   1414 CCCCATATTGTTGTATCTCCGCTTTTAGAGCCTGGC-GAAGAGAAGAAAT   1462
                     ||.||||||||||||||.|||||..|.|||.| ||| ||.|||||.||..
BL00286___man   1411 CCTCATATTGTTGTATCACCGCTGCTCGAGTC-GGCTGATGAGAAAAAGC   1459

BSNT_02035___   1463 TAAGTGCGTTTATACGTCAGCTGGGCGAATC-ACACCGCCAAAAACAAAA   1511
                     |.||.|..|||||...||||||.||.||||| || |||||||||||||||
BL00286___man   1460 TCAGCGACTTTATGGATCAGCTCGGTGAATCGAC-CCGCCAAAAACAAAA   1508

BSNT_02035___   1512 AACGTTTCAGATGCTGAACAATACGACTCCTTTTTTGGTTTTTTTGCAGC   1561
                     |||||||.|..||||||||.|.||||||||||||.|.|||||.|||||||
BL00286___man   1509 AACGTTTAAAGTGCTGAACGACACGACTCCTTTTCTCGTTTTCTTGCAGC   1558

BSNT_02035___   1562 AGGAGGCAGAGCACCGCTACAAGTTAATCGAACAGCTGGCGACAGCTTTG   1611
                     |.|||.||||.||||||||||||.|.||.|||||||||||.|..|||||.
BL00286___man   1559 AAGAGTCAGAACACCGCTACAAGCTGATTGAACAGCTGGCAATCGCTTTA   1608

BSNT_02035___   1612 TTTGAGAAAGGCTATGTTGATAAGGACTATGCGGTTCATGTGGTGATGAG   1661
                     |..||||||||||||||.||.||.||.|||||.||.||.|..||..||||
BL00286___man   1609 TACGAGAAAGGCTATGTGGAAAAAGAATATGCCGTACACGCCGTCTTGAG   1658

BSNT_02035___   1662 GGAAAAAATGTCGGCGACAAATATTGGATCAGGCATTGCCATTCCTCATG   1711
                     .||.|||||||||||||||||.||.|||.|.|||||.||.|||||.||.|
BL00286___man   1659 AGAGAAAATGTCGGCGACAAACATCGGAGCGGGCATCGCGATTCCCCACG   1708

BSNT_02035___   1712 CAAACGCTAAATTTATTAAACAATCAGCAATCGCGATTGCCACATTAAAG   1761
                     |.|||||.|||||.||||||||||||||.||.|||||.||||||||||||
BL00286___man   1709 CGAACGCCAAATTGATTAAACAATCAGCCATTGCGATCGCCACATTAAAG   1758

BSNT_02035___   1762 GAGCCGCTTGAATGGGGAAATGAAAAAGTTTCGCTCGTTTTTATGCTGGC   1811
                     |||||||||||.|||||...|||||||||.||||||||.|||||||||||
BL00286___man   1759 GAGCCGCTTGACTGGGGCTCTGAAAAAGTATCGCTCGTCTTTATGCTGGC   1808

BSNT_02035___   1812 TGTCAAACACGAGGATCAAACCATGACAAAGCAGCTGTTTAGCGAGCTTT   1861
                     |||||||||.||||||||||.|||||||||.||..||||....|||||.|
BL00286___man   1809 TGTCAAACATGAGGATCAAAACATGACAAAACAATTGTTCCAAGAGCTGT   1858

BSNT_02035___   1862 CATATCTT-AGCGAGCAGCCGGCCTTCGTCCAGAAGCTGACGAAAGAAGC   1910
                     | .|.||| ||||||||||||||||||.||||.|||||||||||||||.|
BL00286___man   1859 C-CAGCTTAAGCGAGCAGCCGGCCTTCATCCAAAAGCTGACGAAAGAAAC   1907

BSNT_02035___   1911 CAATGTCATGACATTTTTATCTCATTTGGATTATTAA   1947
                     .|||||.||||..||.||||||.||||||||||||||
BL00286___man   1908 AAATGTGATGAAGTTCTTATCTTATTTGGATTATTAA   1944


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