Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05167 and BL00268
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:17
# Commandline: needle
# -asequence dna-align/BSNT_05167___lacR.1.5803.seq
# -bsequence dna-align/BL00268___lacR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05167___lacR-BL00268___lacR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05167___lacR-BL00268___lacR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05167___lacR
# 2: BL00268___lacR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1024
# Identity: 734/1024 (71.7%)
# Similarity: 734/1024 (71.7%)
# Gaps: 56/1024 ( 5.5%)
# Score: 2547.5
#
#
#=======================================
BSNT_05167___ 1 ATGGCGACAATTAAAGATATCGCGCAGGAA--GCGGGATTTTCAATCTCA 48
.|||||||.||.||||||.| .||||.|| |||||.|.|||.||||||
BL00268___lac 1 GTGGCGACGATAAAAGATGT--TGCAGAAAAGGCGGGGTATTCCATCTCA 48
BSNT_05167___ 49 ACCGTTTCCCGCGTTTTAAATAACGATGAAAGCCTTTCTGTTCCTGATGA 98
||.|||||||||||.||.||||||||.|||||||||||.||.||.|||||
BL00268___lac 49 ACGGTTTCCCGCGTATTGAATAACGACGAAAGCCTTTCCGTACCCGATGA 98
BSNT_05167___ 99 GACACGGGAGAAAATCTATGAAGCGGCGGAAAAGCTCAATTACCGCAAAA 148
|||.|||||||||||.|.|||||.||||||||..||.||.||||||||.|
BL00268___lac 99 GACGCGGGAGAAAATATTTGAAGTGGCGGAAAGCCTGAACTACCGCAAGA 148
BSNT_05167___ 149 AAACAGTAAGGCCGCTGGTGAAACATATTGCGTTTTTATATTGGCTGACA 198
||||..|.|||.|.|||||.|||.|.||.||||||.|.||.||||||||.
BL00268___lac 149 AAACGATCAGGACACTGGTAAAAAACATCGCGTTTCTGTACTGGCTGACG 198
BSNT_05167___ 199 GATAAAGAAGAATTAGAAGATGTCTATTTTAAAACGATGAGATTAGAAGT 248
|||||.|||||..|.|||||.||.|||||||||||||||||..|.|||.|
BL00268___lac 199 GATAAGGAAGAGCTCGAAGACGTGTATTTTAAAACGATGAGGCTGGAAAT 248
BSNT_05167___ 249 AGAGAAACTGGCGAAAGC-ATTCAATGTCGATATGACCACTTATAAAATA 297
.|||||.||.|| ||||| ||||||.|||||..||.|.||.||||||||.
BL00268___lac 249 CGAGAAGCTCGC-AAAGCAATTCAACGTCGAACTGGCAACGTATAAAATT 297
BSNT_05167___ 298 GCGGATGGAATCGAGAGCATTCCTG--AACATACGGAAGGGTTTATTGCC 345
.|||..||.||.||...||||||.| |||||| |||||.||.||||||
BL00268___lac 298 TCGGGAGGCATTGACGCCATTCCCGAAAACATA--GAAGGATTCATTGCC 345
BSNT_05167___ 346 GTCGGCACATTTTCAGATGAAGAGCTGGCTT--TCC---TCAGAAA---- 386
||||||.|.||||||||||| ||..|| ||| |.|||.|
BL00268___lac 346 GTCGGCTCGTTTTCAGATGA-----TGAATTAATCCGATTAAGACAGATG 390
BSNT_05167___ 387 ---TCTCACTGAAAACGGCGTGTTCATCGATTCAACTCCTGATCCCGATC 433
.||| ||||.||.||.||||||||.||.||||||||..|||
BL00268___lac 391 ACGCCTC-------ACGGTGTATTTATCGATTCGACGCCTGATCCGAATC 433
BSNT_05167___ 434 ATTTTGACTCGGTAAGGCCCGATTTGGCACAAATGACAAGGAAGACGGTA 483
|.|||||.||.||.|||||.||.||....||.|||||.|||||.||||||
BL00268___lac 434 ACTTTGATTCAGTCAGGCCGGACTTAAAGCAGATGACGAGGAAAACGGTA 483
BSNT_05167___ 484 AACATCCTGACTGAGAAGGGGCAT-AAGAGCATCGGTTTTATCGGCGGCA 532
.|..|.||.|.||||||.|||||| ||.|| |||||.||||||||.||.|
BL00268___lac 484 GATTTTCTCATTGAGAAAGGGCATGAAAAG-ATCGGCTTTATCGGAGGTA 532
BSNT_05167___ 533 CATACAAAAATCCGAATACCAATCAGGATGAAATGGACATCCGTGAACAA 582
|.|||.|.||.||.|||||..||.|.||.|||||||||.|..|.||||.|
BL00268___lac 533 CGTACCACAACCCCAATACAGATGAAGACGAAATGGACGTAAGGGAACGA 582
BSNT_05167___ 583 ACCTTCAGATC----CTATATGAGGGAAAAAGCCATGCTGGACGAGCGCT 628
||.|| || .|||||||.||||||||...|..||||.||..|||
BL00268___lac 583 ACGTT----TCGCGAATATATGAAGGAAAAAGGGCTCTTGGAGGAAAGCT 628
BSNT_05167___ 629 ATATTTTCTGTCATCGCGGATTCTCTGTAGAAAACGGCTACCGCCTGATG 678
.||||||.||.|...|.||.||.||.||.|||||||||||||..||||||
BL00268___lac 629 TTATTTTTTGCCGGAGGGGTTTTTCGGTGGAAAACGGCTACCATCTGATG 678
BSNT_05167___ 679 ---TCAGCAGCGATCGACACATTAGGCGATCAGCTTCCGACTGCTTTTAT 725
..||||| |.||.|||||.||.||..||||.|||||.||.|||.|
BL00268___lac 679 GACAAAGCAG---TTGAAACATTGGGAGAAAAGCTGCCGACGGCCTTTTT 725
BSNT_05167___ 726 GATTGCAGCGGACCCGATTGCAGTGGGCTGTCTGCAAGCCCTGAACGAAA 775
.|..||.|||||.||||||||.||.|||||.||.||.|||.|.||.||||
BL00268___lac 726 TACAGCGGCGGATCCGATTGCCGTAGGCTGCCTTCAGGCCTTAAATGAAA 775
BSNT_05167___ 776 AAGGAATTGCCATACCAAACAGGGTAAGCATTGTGAGTATCAACAACATC 825
||||.||.|||||.||...|||.||.|||||..|.||.||||||||||||
BL00268___lac 776 AAGGGATCGCCATCCCGGGCAGAGTCAGCATCATCAGCATCAACAACATC 825
BSNT_05167___ 826 AGCTTCGCGAAGTATGTCTCGCCTCCTCTGACGACGTTTCATATTGATAT 875
||..|.|||||.||.||.||.||.||.||||||||.||.|||||.|||||
BL00268___lac 826 AGTGTAGCGAAATACGTATCTCCCCCGCTGACGACATTCCATATCGATAT 875
BSNT_05167___ 876 ACATGAATTATGTAAAAATGCTGTTCAATTACTGCTTGAACAAGTGCAGG 925
..|.||..|.||.|||||.|||.||.||||.||..|.||||||.|.|...
BL00268___lac 876 TAAAGAGCTTTGCAAAAACGCTATTGAATTGCTTTTGGAACAAATACTTC 925
BSNT_05167___ 926 ACAAGAGAAGAACGGTAAAAACATTATATGTGGGCGCAGAATTAATCGTC 975
|.||.||||.|.|.||||||||..|||||.|.||.||.|||.|..|.|||
BL00268___lac 926 AAAAAAGAAAAGCTGTAAAAACGCTATATATCGGTGCCGAACTGGTGGTC 975
BSNT_05167___ 976 AGGAAGAGTATGAATGAAGGATGA 999
|||||.||.|..|||.||
BL00268___lac 976 AGGAAAAGCACCAATTAA------ 993
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