Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05165 and BL00267
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:17
# Commandline: needle
# -asequence dna-align/BSNT_05165___yvfK.1.5803.seq
# -bsequence dna-align/BL00267___cycB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05165___yvfK-BL00267___cycB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05165___yvfK-BL00267___cycB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05165___yvfK
# 2: BL00267___cycB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1304
# Identity: 934/1304 (71.6%)
# Similarity: 934/1304 (71.6%)
# Gaps: 73/1304 ( 5.6%)
# Score: 3200.0
#
#
#=======================================
BSNT_05165___ 1 ---ATGAAAATGGCAAAAAA-GTGTTCCGTATTCATGCTCTGCGCA---- 42
|||||.||| |||||| .|||| |.|.||| |||
BL00267___cyc 1 ATGATGAATATG--AAAAAATATGTT--GGAATCA--------GCAGTGT 38
BSNT_05165___ 43 ----GCTGTCAGTTTATCCTTGGCGGCTTGCGGCCCAAAGGAAAGCAGC- 87
|||.|||||||.||.||..|.||.|||||.||.||.||.||||||
BL00267___cyc 39 CATTGCTCTCAGTTTGTCTTTAACTGCCTGCGGGCCTAAAGAGAGCAGCA 88
BSNT_05165___ 88 ----AGCGCCA-AATCG-AGTTCAAAAGGGTCAGAGCTTGTTGTATGGGA 131
|||..|| |.||| || |||||| ||.||.||.||.|||||
BL00267___cyc 89 ATGGAGCATCAGACTCGAAG--CAAAAG-----GAACTCGTGGTCTGGGA 131
BSNT_05165___ 132 GGATAAAGAAAAGAGCATCGGCATTAAAGACGCCGTTGCTGCGTTTGAAA 181
.||||||||.||.|||...|||||||||||.|||||.||....|||||||
BL00267___cyc 132 AGATAAAGAGAAAAGCGAAGGCATTAAAGATGCCGTCGCCCAATTTGAAA 181
BSNT_05165___ 182 AAGAGCATG----ATGTGAAGGTCAAAGTCGTTGAAAAACCGTATGCCAA 227
|||||||.| ||.| |||||||||||||||||.||.||.||.||
BL00267___cyc 182 AAGAGCACGGCGTATCT----GTCAAAGTCGTTGAAAAGCCTTACGCAAA 227
BSNT_05165___ 228 GCAGATTGAAGATTTGCGAATGGACGGACCGGCCGGCACAGGCCCTGACG 277
||||||.|||||.|||||.|||||.||||||||.||.||.||.||.||.|
BL00267___cyc 228 GCAGATCGAAGACTTGCGGATGGATGGACCGGCGGGAACGGGTCCGGATG 277
BSNT_05165___ 278 TGTTAACAATGCCAGGGGACCAAATCGGAACCGCTGTCACGGAAGGATTA 327
|||||||.|||||.||.|||||||||||.||.||.||.||||||||.||.
BL00267___cyc 278 TGTTAACGATGCCCGGAGACCAAATCGGGACAGCGGTAACGGAAGGTTTG 327
BSNT_05165___ 328 CTCAAGGAATTACATGTCAAAAAAGACGTTCAATCACTTTATACTGACGC 377
.|||||||||||.|.||..|.|||||..|.|||||..|.|||||.||..|
BL00267___cyc 328 ATCAAGGAATTAAAGGTGGACAAAGAGATCCAATCGATCTATACGGAACC 377
BSNT_05165___ 378 TTCCATTCAG-TCTCAAATGGTAGATCAA-----AAGCTTTATGGACTGC 421
|.||| |.|| ||.|| ||| || ||| |||.|.||.||.||||
BL00267___cyc 378 TGCCA-TGAGATCGCA---GGT-GA-CAAACGGCAAGGTCTACGGCCTGC 421
BSNT_05165___ 422 CAAAAGCGGTCGAAACGACTGTCCTTTTTTACAACAAAGATCTCATCTCC 471
|.|||||||||||||||||..|.||.|..||.||.||||||.|.||.||.
BL00267___cyc 422 CGAAAGCGGTCGAAACGACGATGCTCTACTATAATAAAGATTTAATTTCT 471
BSNT_05165___ 472 GAAAAGGAATTGCCCAAAACGCTGGAAGAGTGGTACGACTATTCCAAAAA 521
|||||.|||.||||.|||||||||||.||.|||||.||.|||||||||||
BL00267___cyc 472 GAAAAAGAACTGCCGAAAACGCTGGATGAATGGTATGAGTATTCCAAAAA 521
BSNT_05165___ 522 GACTGCTAATGGCAGCCAATTTGGCTTTTTAGCCCTATTTGATCAAATTT 571
.||.|||.|.||||...||||.|||||..|.||.||.|||||.||.||||
BL00267___cyc 522 AACGGCTGACGGCAAAAAATTCGGCTTCCTGGCGCTGTTTGACCAGATTT 571
BSNT_05165___ 572 ATTATGCAGAAAGTGTGATGAGCGGATATGGCGGATACATTTTTGGAAAG 621
||||||||.|.||.||.|||.|.||.||.|||||.||||||||| .||||
BL00267___cyc 572 ATTATGCACAGAGCGTCATGGGAGGGTACGGCGGCTACATTTTT-AAAAG 620
BSNT_05165___ 622 ----GCCAAAGATGGGAGCTATAACCCGTCAGACATTGGAATTAATAATG 667
||| ||.||.|..|||.|.|||.|.|||.|.||..|.||.||..
BL00267___cyc 621 CGATGCC---GACGGCACTTATGATCCGGCCGACCTAGGCTTGAACAACA 667
BSNT_05165___ 668 AAGGAGCTGTCAAAGGTGCGGCGCTGATTCAGAAGTTTTACAAAGATGGC 717
||||.||.|||.||||.||.|.|...|||||||||||||||.||||.||.
BL00267___cyc 668 AAGGTGCAGTCGAAGGCGCCGAGTACATTCAGAAGTTTTACCAAGAGGGG 717
BSNT_05165___ 718 CTGTTCCCGGCTGGCATTATTGGAGAACAAGGGATTAACGTATTGGAATC 767
||||||||.||.||.||||||||.||.||.||.||.||.||..|||||||
BL00267___cyc 718 CTGTTCCCTGCCGGAATTATTGGGGAGCAGGGCATCAATGTGCTGGAATC 767
BSNT_05165___ 768 GCTGTTCACAGAAGGAAAAGCCGCCGCAATTATCTCTGGGCCATGGAATG 817
||||||.||.|||||||||||.||.||.||.||.||.||.||.|||||..
BL00267___cyc 768 GCTGTTTACGGAAGGAAAAGCAGCAGCGATCATTTCAGGCCCGTGGAACC 817
BSNT_05165___ 818 TAGAAGCTTTTTCAAAAGCAGGAATCAATTATGGCATTACGAAACTGCCG 867
|.|||.|.||...||||||.||.||||||||.||..||.|.||.|||||.
BL00267___cyc 818 TGGAACCGTTCAAAAAAGCGGGTATCAATTACGGGGTTGCCAAGCTGCCT 867
BSNT_05165___ 868 AAGCTGGAAAATGGGAAAAACATGAGCTCCTTTATCGGCGTCAAAAGCTA 917
||.|||...||.||.||..|.|||||.||.|||.|||||||.||.|||||
BL00267___cyc 868 AAACTGTCCAACGGCAAGCATATGAGTTCTTTTGTCGGCGTGAAGAGCTA 917
BSNT_05165___ 918 CAACGTTAGTGCATTTTCAAAGAATGAAGAGCTGGCGCAAGAATTAGCCG 967
|||.||.||.||.|.|||.|||||||..||.||.||..||.||||||.||
BL00267___cyc 918 CAATGTAAGCGCTTATTCGAAGAATGCCGATCTAGCCGAACAATTAGTCG 967
BSNT_05165___ 968 TTTTTCTGGCAAATGAAAAAAATTCTAA-AACACGATATGAAGA-AACGA 1015
|.||.||.||.|||.||.||||.||.|| ||.| |||||| ||| .||.|
BL00267___cyc 968 TCTTCCTCGCCAATAAAGAAAACTCAAAGAAGA-GATATG-AGATCACAA 1015
BSNT_05165___ 1016 AAGAAGTTCCTGCTGTGAAATCCCTAGCCAATGACCCGGCTATTATGAAA 1065
|||||||.||.||.||.|||...||.||..||||.||.||..|.|..|||
BL00267___cyc 1016 AAGAAGTACCCGCAGTCAAAGAACTGGCGGATGATCCTGCCGTCACAAAA 1065
BSNT_05165___ 1066 AGCGAGGCGGCACGGGCTGTTACTGAACAATCCCGTTTCTCAGAGCCAAC 1115
|||||.|||||.|..||.|||.|.||.|||||.|..|.|||||||...||
BL00267___cyc 1066 AGCGAAGCGGCTCAAGCCGTTGCCGAGCAATCTCAGTACTCAGAGTTGAC 1115
BSNT_05165___ 1116 CCCAAATATTCCGGAAATGAATGAAATATGGACGCCGGCTGATTCAGCAT 1165
.||.||||||||.||.|||||||||.|||||||||||||.|||.|.||..
BL00267___cyc 1116 ACCGAATATTCCTGAGATGAATGAAGTATGGACGCCGGCGGATGCGGCTC 1165
BSNT_05165___ 1166 TACAGACGGTTGCAACAGGGAAGGCAGATCCGAAACAAGCATTGGATCAA 1215
|.||.||..|||||||.||.||.||.||.||||||.||||..|.||||||
BL00267___cyc 1166 TGCAAACAATTGCAACCGGAAAAGCCGAACCGAAAAAAGCGCTTGATCAA 1215
BSNT_05165___ 1216 GCAGCTGAAACGGCCAAAGGACAAATTAAGGCAAAGCACAGCG---GAAA 1262
||.||.||||||....|||||||.||.||.||.|||||||||| |.||
BL00267___cyc 1216 GCCGCGGAAACGATACAAGGACAGATCAAAGCGAAGCACAGCGGCAGCAA 1265
BSNT_05165___ 1263 ATAA 1266
||||
BL00267___cyc 1266 ATAA 1269
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