Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05160 and BL00263
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:16
# Commandline: needle
# -asequence dna-align/BSNT_05160___yvfO.1.5803.seq
# -bsequence dna-align/BL00263___yvfO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05160___yvfO-BL00263___yvfO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05160___yvfO-BL00263___yvfO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05160___yvfO
# 2: BL00263___yvfO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1338
# Identity: 958/1338 (71.6%)
# Similarity: 958/1338 (71.6%)
# Gaps: 108/1338 ( 8.1%)
# Score: 3302.0
#
#
#=======================================
BSNT_05160___ 1 ---ATGAAAAGCAAAGTGAAAT---TGTTCTTTGCG--GCTGCCA-TCGT 41
||||| .||.||| .| |||| ||||.| ||||..| |.||
BL00263___yvf 1 TTGATGAA---GAACGTG--CTGGCTGTT-TTTGTGGTGCTGATATTTGT 44
BSNT_05160___ 42 GTGGAGTGCATGTAGTTCAACA-----------GGATATGCCGCTGCCAT 80
.|.|.|.||||.|.| |||| ||| .||.||||
BL00263___yvf 45 TTTGGGCGCATTTGG---AACAAGCGGTCCGGCGGA-----AGCCGCCA- 85
BSNT_05160___ 81 TGAGA---AGGAGA-AGCACGTGTCAAAGCTTCGGGCAGAGGATCTTTTT 126
|||| ||| || .||| .||||| ||| ||||.|
BL00263___yvf 86 -GAGATTCAGG-GACGGCA-----AAAAGC----GGC-------CTTTAT 117
BSNT_05160___ 127 GTTAAAAAAGTAGAGGGGATGAACAAGGATTTTATCAAAGGGGCAGATGT 176
|||.||||.||....|||.|...||||||||||||.|||||||..|||||
BL00263___yvf 118 GTTGAAAAGGTTTCAGGGCTTCGCAAGGATTTTATAAAAGGGGTTGATGT 167
BSNT_05160___ 177 GTCCAGCGTTATTGCTTTGGAAAACAGCGGTGTCACCTTTTACAATACAA 226
.||.|||.|.||.|||||||||.|.|||||.|||.|||||||||||..|.
BL00263___yvf 168 TTCGAGCATCATCGCTTTGGAAGAGAGCGGCGTCGCCTTTTACAATGAAT 217
BSNT_05160___ 227 GCGGAAAACGTCAGGACATCTTTACAAC-CTTA---AAACAGGCTGGGGT 272
.||||||....|||||.||.||.|.||| ||.| ||.||||| ||
BL00263___yvf 218 CCGGAAAGAAACAGGATATATTCAAAACGCTGAAGGAAGCAGGC----GT 263
BSNT_05160___ 273 CAACTATGTTCGCGTCCGCATCTGGAATCACCCGTATGATTCAAATGGCA 322
|||.|||||.||.||.|||||.||||||.|.||.||||||.|.||.||||
BL00263___yvf 264 CAATTATGTCCGGGTGCGCATATGGAATGATCCCTATGATGCCAACGGCA 313
BSNT_05160___ 323 ACGGGTATGGCGGGGGAAACAATGATGTTCAAAAAGCCATCGAAATCGGA 372
||||.||.||.|||||.||.||||||.|..|||||||.||..|.||||||
BL00263___yvf 314 ACGGCTACGGAGGGGGCAATAATGATCTGGAAAAAGCGATTCAGATCGGA 363
BSNT_05160___ 373 AAAAGAGCGACAGCGAACGGAATGAAGGTGCTGGCCGACTTTCACTACTC 422
|||.|.||.||.||.||||||||||||.|||||||.||.||.|||||.||
BL00263___yvf 364 AAACGGGCCACTGCCAACGGAATGAAGCTGCTGGCGGATTTCCACTATTC 413
BSNT_05160___ 423 TGATTTCTGGGCCGATCCAGCGAAACAAAAGGTGCCCAAAGCCTGGGCGA 472
.|||||||||||.||.||.||||||||.||.|.|||.|||||.|||||||
BL00263___yvf 414 CGATTTCTGGGCGGACCCGGCGAAACAGAAAGCGCCGAAAGCATGGGCGA 463
BSNT_05160___ 473 ATCTCAGCTTTGAAGCAAAAAAAG-CAAAGCTCTATGAGTATACGAAACA 521
|.||.|.|||||||| |.|||||| |...|||.|||.|.|||||.|||||
BL00263___yvf 464 ACCTAAACTTTGAAG-ATAAAAAGACGGCGCTTTATCAATATACAAAACA 512
BSNT_05160___ 522 AAGCCTGCAAAAGATGATCAAG--GAAGGCTTTGACATCGGCATGGTTCA 569
||||||..||..||||| ||| |..|||.|.||||||||||||||.||
BL00263___yvf 513 AAGCCTTAAAGCGATGA--AAGCAGCGGGCATCGACATCGGCATGGTGCA 560
BSNT_05160___ 570 GGTCGGAAATGAAACAACAGGAGGATTTGCCGGTGAGACTGATTGGACGA 619
||||||.||.|||||||..||.||..||||||||||.||.||||||.|||
BL00263___yvf 561 GGTCGGTAACGAAACAAACGGGGGCCTTGCCGGTGAAACGGATTGGGCGA 610
BSNT_05160___ 620 AGATGTGCCAATTATTTAATGAAGGAAGCCGAGCGGTCAGGGAGACAAAT 669
|||||.||||||||||.||.|..||.||.|.||||||..|.|||||..||
BL00263___yvf 611 AGATGAGCCAATTATTCAACGCCGGGAGTCAAGCGGTGCGAGAGACGGAT 660
BSNT_05160___ 670 TCAAATATTTTGGTCGCCCTGCATTTTACCAATCCTGAAACGGCTGGAAG 719
||.|||||..|.||||||.||||||||||||||||.||.|||.|.|||||
BL00263___yvf 661 TCGAATATCCTAGTCGCCTTGCATTTTACCAATCCGGAGACGTCAGGAAG 710
BSNT_05160___ 720 GTATTCATTTATTGCAGAAACAC----TCAGCAAAAACAAAGTGGATTAT 765
|||..|.|..|||||.||.||.| ||.|| |..|.||.||.||.
BL00263___yvf 711 GTACGCTTGGATTGCCGAGACGCTTCATCGGC----ATCATGTAGACTAC 756
BSNT_05160___ 766 GATGTGTTTGCTAGCTCCTATTATCCTTTCTGGCATGGCACATTACAAAA 815
|||||||||||.|||||.||||||||.||.|||||||||||..|..|.||
BL00263___yvf 757 GATGTGTTTGCAAGCTCGTATTATCCGTTTTGGCATGGCACGCTGAAGAA 806
BSNT_05160___ 816 TTTGACCTCTGTGCTGAAGGCTGTTGCCAATACGTACGGCAAAAAAGTCA 865
|||.||.||.||.||||...||||.||..|||||||||||||||||||||
BL00263___yvf 807 TTTAACATCCGTCCTGACATCTGTCGCAGATACGTACGGCAAAAAAGTCA 856
BSNT_05160___ 866 TGGTGGCGGAGACATCGTACACCTATACCGCTGAGGATGGCGATGGGCAT 915
||||.||.||||||||.||.||.|||||.|||||.||.||.||.||.||.
BL00263___yvf 857 TGGTTGCTGAGACATCTTATACGTATACGGCTGAAGACGGAGACGGACAC 906
BSNT_05160___ 916 GGAAATACAGCACCAAAAAGCGGGCAGACGCTGCCAT-ATCCAATTTCTG 964
|||||||||||.||.||||.|||.||.|||||| .|| ||||..|..|.|
BL00263___yvf 907 GGAAATACAGCTCCGAAAAACGGCCAAACGCTG-AATAATCCGGTCACCG 955
BSNT_05160___ 965 TTCAAGGCCAGGC-AACTGCAGTAAGAGATGTAATGGAGGCAGT-GGCGA 1012
|||||||.||||| ||| ||.||..|.|||||.||..|.||.|| .|||
BL00263___yvf 956 TTCAAGGGCAGGCGAAC-GCGGTCCGTGATGTGATTCAAGCGGTCAGCG- 1003
BSNT_05160___ 1013 ATACG--GGCAAAGCAGGACTTGGTGTTTTCTACTGGGAGCCGGCGTGGA 1060
||| ||..||||.|||.|.||.||||||||.|||||.|||||.||||
BL00263___yvf 1004 --ACGTAGGTGAAGCCGGAATCGGCGTTTTCTATTGGGAACCGGCATGGA 1051
BSNT_05160___ 1061 TTCCAGTCGGGCCGAAGACACA---GATAGAGAAAAACAAAGTGTTATGG 1107
||||.||.||.|| |.|.|| |.|.||||||||.||||.|.|.|||
BL00263___yvf 1052 TTCCGGTAGGACC---GGCTCACCGGCTCGAGAAAAATAAAGCGCTTTGG 1098
BSNT_05160___ 1108 GAAACATACGGGTCAGGGTGGGCGTCCAGCTATGCTGCTGAATACGACCC 1157
||.||||||||.|||||.|||||..|.|||||||||||||||||.|||||
BL00263___yvf 1099 GAGACATACGGATCAGGCTGGGCTACAAGCTATGCTGCTGAATATGACCC 1148
BSNT_05160___ 1158 TGAAGACGCCGGGAAGTGGTATGGGGGAAGTGCTGTAGATAATCAAGCTT 1207
.||||||||.||.|||||||.|||.||.||.||.|||||.|||||.||.|
BL00263___yvf 1149 GGAAGACGCAGGAAAGTGGTTTGGCGGCAGCGCCGTAGACAATCAGGCAT 1198
BSNT_05160___ 1208 TATTTGATTTTAATGGACACCCGCTGCCTTCTTTGCAGGTGTTTCAATAT 1257
|.|||||||||||.||||..||..||||.||..|.||.||||||||||||
BL00263___yvf 1199 TGTTTGATTTTAAAGGACGTCCATTGCCGTCGCTTCATGTGTTTCAATAT 1248
BSNT_05160___ 1258 GCGGAGTCAGG-ACA-TATTCCAAA---GAAACGCTGA 1290
|..||..|.|| ||| .||||.||| ||
BL00263___yvf 1249 GTTGATACGGGAACACCATTCAAAAATTGA-------- 1278
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