Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05286 and BL00259
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:23
# Commandline: needle
# -asequence dna-align/BSNT_05286___yvcP.1.5803.seq
# -bsequence dna-align/BL00259___yxdJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05286___yvcP-BL00259___yxdJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05286___yvcP-BL00259___yxdJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05286___yvcP
# 2: BL00259___yxdJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 825
# Identity: 445/825 (53.9%)
# Similarity: 445/825 (53.9%)
# Gaps: 228/825 (27.6%)
# Score: 1072.0
#
#
#=======================================
BSNT_05286___ 1 ---------GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGC 41
||| .||.||||.|||||.||...|...|||||
BL00259___yxd 1 ATGCAAAAAGTG---------ATGATTGTAGAAGACGACCCGAAAATTGC 41
BSNT_05286___ 42 TTCTTTGCT------GGGCGGTCATCTTCAAAAATACGGAT--------- 76
...||||.| | |||.||...||||||||||
BL00259___yxd 42 AGATTTGTTAAAATCG------CATATTGTCAAATACGGATACAACGTTC 85
BSNT_05286___ 77 ATGAAGTGAA--AATTGCTGAACAGCTGAATGATATAAAATTGGAATTTG 124
|||.|||||| |.|| |||.|...|.|..||| ||.||
BL00259___yxd 86 ATGTAGTGAAAGACTT--TGACCGTGTCATGGAT---------GAGTT-- 122
BSNT_05286___ 125 CAGAA--ATGAAGCCTGATCTTGTGCTGCTTGATATCAACCTGCCTTTTT 172
||||| |.|..||||||||||||.|||||||||||.||||||||....|
BL00259___yxd 123 CAGAAGCACGGCGCCTGATCTTGTTCTGCTTGATATTAACCTGCCGAGCT 172
BSNT_05286___ 173 TTGACGGATTTTATTGGTGCAGGCAAATCCGTACC--------ATTTCCA 214
|||||||.|..||.||||||.|||||||||| || |||
BL00259___yxd 173 TTGACGGCTACTACTGGTGCCGGCAAATCCG--CCAGGAATCGATT---- 216
BSNT_05286___ 215 ATGCGCCGATTATCTTTATATCGGCACGGATCGATGAGCTGAATCAGGTA 264
|||.||| |..|.|||||.||.||.||||..|.|||..||.|||||||.
BL00259___yxd 217 -TGCCCCG-TCTTGTTTATTTCTGCGCGGACAGGTGAAATGGATCAGGTG 264
BSNT_05286___ 265 ATGGCGATT-GAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATC 313
||||| ||| |||||.|||||.|||||.|.||||||.||||||||.||..
BL00259___yxd 265 ATGGC-ATTGGAAAACGGCGGAGATGACTTTATCACCAAGCCGTTTCACG 313
BSNT_05286___ 314 TAGAGGTAGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCA---CATAT 360
..|||.|.||.|||||.||||| |.||..||.||..|||| |.||.
BL00259___yxd 314 CCGAGATCGTCATGGCAAAAAT---ACGCAGCCAGCTTCGCAGGGCTTAC 360
BSNT_05286___ 361 GGTGAATATTCGCCCTCTTTGC-----CGCAGGAA-----TCTAGAATAG 400
||.|||||..|| || ||.||||| .||.|||.|
BL00259___yxd 361 GGCGAATACGCG--------GCGAAGGCGGAGGAACGGCTGCTGGAAAA- 401
BSNT_05286___ 401 TGGAGCTTGGTGGGCTGACGATTTATCCTGA-----TCAAAATGA----- 440
.|..||||||..|.|.|||||.|| |..||.|||
BL00259___yxd 402 -------AGAAGGGCTGCGGCTGTATCCGGAAAGACTTGAACTGACATTT 444
BSNT_05286___ 441 ---GGCCGAATGGAACAGCTCCCGTATTCTGTTTT--CCCAAAAAGAATT 485
||.|.||.|| |||.||| |..||||||||..
BL00259___yxd 445 GCCGGTCAAACGG---------------CTGCTTTGACGAAAAAAGAAGC 479
BSNT_05286___ 486 TCAGCTTCTCTCTATTTTTG------TGAGGGA---GCATAAAAAAATTG 526
..| ||||.||| |.|.||| .|||...|.||
BL00259___yxd 480 GGA---------TATTATTGAAAGCTTAATGGAACGCCATCCGAGAA--- 517
BSNT_05286___ 527 TTTC---TCGTGATGAACTATTGGAGGC---GTTATGGGATGACGTTGAT 570
|||| .||.||.|| .|||..||| |.|.||||||||....|..
BL00259___yxd 518 TTTCAGGCCGCGAAGA---TTTGCTGGCCAAGCTGTGGGATGATCAGGCA 564
BSNT_05286___ 571 TTTGTCGATGACAATACG-TTAACGGTCAATGTCAAC----CG-GCTGCG 614
|.|||.|||||.||.||| || ||||||||| || ||..|.
BL00259___yxd 565 TATGTGGATGAAAACACGCTT-------AATGTCAACATTACGCGCGTCA 607
BSNT_05286___ 615 GAGAAAA----CTGGAGAATGC-CGG-ACTGAAAGATTGCATTTCCACAA 658
||.|||| |.||| || ||| |.|| |||||
BL00259___yxd 608 GAAAAAAATTTCAGGA----GCTCGGTATTG-AAGAT------------- 639
BSNT_05286___ 659 TCAGAGGACAA--------------GGCTATCAATTTCAAGTCAATC--- 691
.|||.||| || |||||||..||..|.|| |||
BL00259___yxd 640 GCAGTGGA-AACAGTGCGGGGCGCGGGCTATCGCTTGAATGT--ATCCTG 686
BSNT_05286___ 692 --GGAAGGATGAAGCGGAGTGTTAA 714
.|||||..|.||.|||.||.
BL00259___yxd 687 GGTGAAGGCGGGAGAGGAATGA--- 708
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