Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06065 and BL00249

See Amino acid alignment / Visit BSNT_06065 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:04
# Commandline: needle
#    -asequence dna-align/BSNT_06065___yxeH.1.5803.seq
#    -bsequence dna-align/BL00249___yxeH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06065___yxeH-BL00249___yxeH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06065___yxeH-BL00249___yxeH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06065___yxeH
# 2: BL00249___yxeH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 836
# Identity:     606/836 (72.5%)
# Similarity:   606/836 (72.5%)
# Gaps:          46/836 ( 5.5%)
# Score: 2166.5
# 
#
#=======================================

BSNT_06065___      1 ATGTACAAACTAATTGCAATTGATATGGATGGAACACTTTTAAATGATCA     50
                     ||||||||||||||.||.||.|||||||||||||||.|.||.|||||||.
BL00249___yxe      1 ATGTACAAACTAATCGCGATAGATATGGATGGAACATTGTTGAATGATCT     50

BSNT_06065___     51 TCATGAAGTAACAGAGGAGGTCCGCGACGCCCTTCACGCGGC--AAAAGC     98
                     ||||||||||||||||||.||.||..|.|||||.||.||.||  ||||.|
BL00249___yxe     51 TCATGAAGTAACAGAGGAAGTACGGAATGCCCTGCATGCCGCGAAAAAAC    100

BSNT_06065___     99 GGAAGGTGTCAAAATTGTGCTTTGCACCGGCCGGCCTATCGGGGGTGT--    146
                       ||||.||.|||||.||.||.|||||.|||||.||..||||.|||||  
BL00249___yxe    101 --AAGGCGTAAAAATCGTTCTCTGCACGGGCCGTCCCCTCGGCGGTGTAA    148

BSNT_06065___    147 GCAGAGATATTTAGATGAACTGAATTTAATTGAAGAAGGCGACTATGTTA    196
                     ||  .|.||..|.||.|||||||||||||.||||||.|||||.|||||.|
BL00249___yxe    149 GC--CGCTACCTGGAAGAACTGAATTTAAATGAAGACGGCGATTATGTCA    196

BSNT_06065___    197 TTGCGTATAATGGAGCGCTTGTTCAAAATACGCATACAAATGAAGTGGTC    246
                     |.||.|||||.||||||||.|||||||||||||||||..|.|||||.||.
BL00249___yxe    197 TCGCCTATAACGGAGCGCTCGTTCAAAATACGCATACTCAGGAAGTTGTG    246

BSNT_06065___    247 TCAGAGCTGTCTCTCGGTTATGATGATTTGACTTCATTATATGACCTGAG    296
                     |||||.|||.|.||.||.|||||||||.|||..||.||||||||.||.||
BL00249___yxe    247 TCAGAACTGACACTGGGCTATGATGATGTGAAATCGTTATATGAGCTCAG    296

BSNT_06065___    297 CTTAGAGCTGAAGACGCCGATGCATTTCTTTGACTCATCTAATTTGTATA    346
                     |..|.||||..|.||.||||||||.||.|||||.||..||.|||||||||
BL00249___yxe    297 CCAAAAGCTTGATACTCCGATGCACTTTTTTGATTCGGCTTATTTGTATA    346

BSNT_06065___    347 CGCCTAACCGGGACATTAGCGAATTTACCGTATACGAATCCTATGTGACA    396
                     ||||.||||||||.||.|||...|.||||||.||||||||.||.||.||.
BL00249___yxe    347 CGCCAAACCGGGAAATCAGCCCGTATACCGTTTACGAATCATACGTCACC    396

BSNT_06065___    397 CAGGTGCCGCTTCATTTCCGCAAAATTGACGAGGTGCCAAAAGATATCCT    446
                     .|.||||||||.|..|||||.|..||.||.||..|.||..|||||.|.||
BL00249___yxe    397 AAAGTGCCGCTCCGGTTCCGGACGATCGAAGAAATCCCGCAAGATCTTCT    446

BSNT_06065___    447 CATCCCGAAAGTGATGTTTATTGATAAACCGGAGAA-CTTAAGCCG--CG    493
                     ....||.||.|.|||||..||||||.|.|||||.|| ||..| |||  ||
BL00249___yxe    447 GGCGCCAAAGGCGATGTACATTGATGAGCCGGAAAAGCTGGA-CCGGACG    495

BSNT_06065___    494 TCATTACATCG-----ATTCCGAAAGACGTGAGAGAAAAATATACAATGG    538
                            ||||     ||.|||.|||||||.|..|||...||||||||||
BL00249___yxe    496 -------ATCGCCGCAATACCGGAAGACGTCAAGGAACGCTATACAATGG    538

BSNT_06065___    539 TCAGAAGCGCGCCTTTCTTTTATGAAATTCTGCACTCGGAAGCCAGCAAA    588
                     |.|.|||..||||.|||||||||||||||||.|||.|.|..||.||.|||
BL00249___yxe    539 TGAAAAGTTCGCCGTTCTTTTATGAAATTCTTCACCCTGCGGCAAGTAAA    588

BSNT_06065___    589 GGAAATGCTGTACGCCAGCTGGCTCAGCTCCTTGGAATTGAACAGACGGA    638
                     |||||||||||.|..|||||.||..|..|..|.||.||.|..|||...||
BL00249___yxe    589 GGAAATGCTGTTCAGCAGCTTGCCGACATATTAGGCATCGCGCAGGAAGA    638

BSNT_06065___    639 AGTCATGTGCATAGGCGACAACGGGAACGACCTGACAATGATCGAATGGG    688
                     |||.|||||.||.||.||||||||.||||||.||.|.|||||||||||||
BL00249___yxe    639 AGTGATGTGTATTGGAGACAACGGAAACGACATGTCCATGATCGAATGGG    688

BSNT_06065___    689 CGGGCTGCGGGGTTGCCATGGCAAACGCCATCCCAGAAGTATTGGAAGCA    738
                     ||||.|||||.||.|||||||..||.||.|||||.||.|||         
BL00249___yxe    689 CGGGTTGCGGAGTCGCCATGGGGAATGCGATCCCTGAGGTA---------    729

BSNT_06065___    739 GCAAACTTTC-----------AAACACGCTCCAATAATGAACATGGTGTT    777
                       |||..|||           ||||.||..|.|||||||||.|.||.|||
BL00249___yxe    730 --AAAGCTTCGGCCGATTACGAAACGCGTACGAATAATGAAAACGGCGTT    777

BSNT_06065___    778 GCGCATGCGATTCACGAGCTTGTTTTGGCTAAATAA    813
                     ||.||.||.||||..||||||||.|||.|.||||||
BL00249___yxe    778 GCCCACGCCATTCGTGAGCTTGTATTGTCCAAATAA    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06065 and BL00249

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
