Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06094 and BL00241
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:06
# Commandline: needle
# -asequence dna-align/BSNT_06094___iolF.1.5803.seq
# -bsequence dna-align/BL00241___iolF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06094___iolF-BL00241___iolF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06094___iolF-BL00241___iolF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06094___iolF
# 2: BL00241___iolF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1342
# Identity: 1016/1342 (75.7%)
# Similarity: 1016/1342 (75.7%)
# Gaps: 62/1342 ( 4.6%)
# Score: 3883.0
#
#
#=======================================
BSNT_06094___ 1 ATGGGCAAT--ACCAATGG---------AGATTCAGCCTTCAATAAACGG 39
| |.|||||| ||..|||.|.|||||||||||.
BL00241___iol 1 --------TTGAGCAATGGAAGTGCAGCAGTCTCACCATTCAATAAACGA 42
BSNT_06094___ 40 ACAATCGCGGCAGCATTGGCCAACTATATTGATGCCGGTTCAATTGTGGC 89
||..||||.|||||.|||||.||.||.||||||||.||.||.|||||.||
BL00241___iol 43 ACCGTCGCAGCAGCTTTGGCAAATTACATTGATGCAGGCTCCATTGTCGC 92
BSNT_06094___ 90 AGGCTCCGCCGGTTTATCATTATGGGTCAGTTACCTTAAGCTATCCGATA 139
|||.||.||.||.|||||.|||||||||||||||||.|||||.||.||||
BL00241___iol 93 AGGATCGGCAGGATTATCTTTATGGGTCAGTTACCTGAAGCTTTCTGATA 142
BSNT_06094___ 140 CGCAAATCGGGCTGCTTGGCGCGCTGAGCGCAAATGCGATTTCTGCCGCT 189
|.||.|||||.|||||.|||||..|.|||||.||.||.|||||.||.||.
BL00241___iol 143 CACAGATCGGACTGCTCGGCGCATTTAGCGCCAACGCCATTTCGGCAGCA 192
BSNT_06094___ 190 GTCGGCGCGCTGCTTGGCGGGTTTCTGGCTGATAAAGTCGGACGGAAGGC 239
.||||.||||||||.||.||.|||.||||.||.|||.|.||.||.|||||
BL00241___iol 193 ATCGGAGCGCTGCTCGGAGGCTTTTTGGCCGACAAAATTGGCCGAAAGGC 242
BSNT_06094___ 240 TGTTTATACCAATAGTATGCTGGTTTATGCACTAGGGATTTGTTTGGTTT 289
|||.|||||.||.||||||||||||||||||||.||.||||||||.||||
BL00241___iol 243 TGTCTATACGAACAGTATGCTGGTTTATGCACTGGGCATTTGTTTAGTTT 292
BSNT_06094___ 290 TGTTCGGGGTTAATTTCCCCATGTTGTTAAGCGGTTACATCATTATCGGT 339
|.|||||....|..||||||.|.|||||||||||||||||.|||||||||
BL00241___iol 293 TATTCGGCACCAGCTTCCCCTTTTTGTTAAGCGGTTACATTATTATCGGT 342
BSNT_06094___ 340 TTATCAGTAGGAGCTGATATAACCGCGTCATGGACCATTATTGCGGAAAA 389
|||||.||||||||||||||.||.||.||.|||||.||.||.||.||.||
BL00241___iol 343 TTATCGGTAGGAGCTGATATTACGGCTTCCTGGACGATCATCGCAGAGAA 392
BSNT_06094___ 390 TGCGCCAAAGAAGAATCGGGCCAGGCATTGTGGCGTAGCACAAGTCGCTT 439
.||.||.|||||.||..||||..|.|||||.||.||.|||||.|||||.|
BL00241___iol 393 CGCACCTAAGAAAAACAGGGCGCGTCATTGCGGGGTTGCACAGGTCGCAT 442
BSNT_06094___ 440 GGGCCGCGGGCGCTGTCGTTGTACTGTTCCTCTCCGTACTGGCCGGTGAC 489
||||.|||||.||.||.||.||.|||.|.||.||.||.|||..||||||.
BL00241___iol 443 GGGCTGCGGGAGCGGTTGTGGTTCTGCTGCTGTCGGTCCTGCTCGGTGAT 492
BSNT_06094___ 490 TTGGGACTCTTGGGGAATAAAATCGTATTTGCCCATCTGCTTGTGATTGC 539
||.||..|.|||||.|||||||||||.||||..|||.||||.||.||.||
BL00241___iol 493 TTAGGCTTATTGGGCAATAAAATCGTGTTTGGGCATTTGCTCGTTATCGC 542
BSNT_06094___ 540 GCTGATTACGTACATCCTGAGAATCAGGCTTCCGGAATCAGACGCCTGGC 589
.||||||||.||..|.|||.|.|..|||||.||||||||.||.|||||||
BL00241___iol 543 ACTGATTACTTATGTTCTGCGGAAAAGGCTGCCGGAATCCGATGCCTGGC 592
BSNT_06094___ 590 AG--TCAA---AAAAT-----CAGCCGGAGGATGCTCAGGCAGAGAAGCC 629
|| |||| .|||| .||||| |||| ||||||
BL00241___iol 593 AGGATCAATCCGAAATGGCTCAAGCCG--------TCAG-----GAAGCC 629
BSNT_06094___ 630 GGCTGTACTGAGTAAGACATCATATTTTGATTTGCTCAAGCCTATGTATC 679
| |||||..|.|||.|.||||||||..||||||.||||.
BL00241___iol 630 G------------AAGACGCCTTATCTCGATTTGCTTCAGCCTAAGTATT 667
BSNT_06094___ 680 TCAAAAGCATACTGTTTTTGATGGGTGTGTACTTGGTTTGGAACTTAGCC 729
|.||||||||..|.||.||.|||||.|||||||||||||||||..|.||.
BL00241___iol 668 TGAAAAGCATTTTATTCTTAATGGGCGTGTACTTGGTTTGGAATCTGGCT 717
BSNT_06094___ 730 GCCGGGGTCATGGGCTTCTTTATGCCATACATTTATCAGCAGGTCGGCGG 779
||.||.||||||||.||.||||||||.||||||||||||||||||||||.
BL00241___iol 718 GCAGGTGTCATGGGGTTTTTTATGCCTTACATTTATCAGCAGGTCGGCGA 767
BSNT_06094___ 780 TGTATCTGCCAACATGGCCAACCTTTTGCAAATGGGGCTGTTTATCTTCA 829
||||||.||.|.||||||.||..|||||||.||||||||||||||.||||
BL00241___iol 768 TGTATCAGCGACCATGGCAAATATTTTGCAGATGGGGCTGTTTATTTTCA 817
BSNT_06094___ 830 CAGGATTGGGGGTCGCTTTGATCTTCATGCCCTTTGCCGACAAATATAGA 879
|.||..|.||.||||||||.|||||||||||.|||||.||||||||.||.
BL00241___iol 818 CCGGGCTTGGCGTCGCTTTTATCTTCATGCCGTTTGCAGACAAATACAGG 867
BSNT_06094___ 880 AAAACCGTATTTGGAATCGCCGCTTTCATGGCGGTGATCGGGTGGACACT 929
||.||.||.|||||.|||.||||.||...||||||||||||.|||.||.|
BL00241___iol 868 AAGACAGTGTTTGGGATCTCCGCATTTGCGGCGGTGATCGGCTGGTCATT 917
BSNT_06094___ 930 GTTTCTGCTGCCAGTTGAAGGCCTGCCGATTCTGCTCCTGTTTATTGTCG 979
|||||||||.||.|..||.|||.||||||||||..||||.|||||.||..
BL00241___iol 918 GTTTCTGCTTCCGGCAGAGGGCATGCCGATTCTCATCCTCTTTATCGTGA 967
BSNT_06094___ 980 TGATCGGCATCAATAACGGAGCCGGGCAGCAAGCGAACTATCAGTTATGG 1029
||||||||||.||.|||||.||.|||||.||.||.||||||||.||||||
BL00241___iol 968 TGATCGGCATAAACAACGGGGCGGGGCAACAGGCCAACTATCAATTATGG 1017
BSNT_06094___ 1030 GCCAGCGAAATCTTTCCTACGCAATATCGTGCTTCCGCACAAGGACTGAT 1079
||.||.|||||.||.||.|||.|||||||.||.||.|||||||||.||||
BL00241___iol 1018 GCGAGTGAAATTTTCCCGACGGAATATCGCGCATCTGCACAAGGATTGAT 1067
BSNT_06094___ 1080 GTTTTTCCTTGTCCGTATTTCAATAGGGATTTGGAGTCTGTTTGTCCCAA 1129
|||.||||||||.|||||.|||||.|||..||||||.||.||.||.||||
BL00241___iol 1068 GTTCTTCCTTGTTCGTATCTCAATCGGGGCTTGGAGCCTTTTCGTTCCAA 1117
BSNT_06094___ 1130 TGATTATCACCAATTTCGGCATTGGAACGATGGCTGCAATTCTTCTCGGA 1179
||||.|||.|.|||||.||.||||.|...|||||.||.|||||.||.|||
BL00241___iol 1118 TGATCATCTCGAATTTTGGAATTGCATTTATGGCGGCCATTCTCCTTGGA 1167
BSNT_06094___ 1180 TGTGTGACGGCCAGTATGATCATCGGGCTGCTCTTTGCGCCGAATACGTC 1229
|||||.||||||||.|||.||||||||||..|.|||||.||||||||.||
BL00241___iol 1168 TGTGTAACGGCCAGCATGCTCATCGGGCTCTTTTTTGCACCGAATACATC 1217
BSNT_06094___ 1230 TGGCAAGTCGCTTGAGCAAATTCAAGAGGAACTCTACGGATCTCCTCAGA 1279
.||.|||||||||||.||||||||.||.||.||.||.||..||||||.|
BL00241___iol 1218 CGGTAAGTCGCTTGAACAAATTCAGGAAGAGCTGTATGGGACTCCTCCG- 1266
BSNT_06094___ 1280 GC-CAAGTAAAGCAAG---AAACAGAAAGCAAAATAATGTAA 1317
|| ||||....||||| |||| |||.|||||.||||||
BL00241___iol 1267 GCTCAAGCTGGGCAAGTGCAAAC---AAGAAAAATTATGTAA 1305
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