Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05768 and BL00232
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05768___ywfG.1.5803.seq
# -bsequence dna-align/BL00232___avtA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05768___ywfG-BL00232___avtA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05768___ywfG-BL00232___avtA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05768___ywfG
# 2: BL00232___avtA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1602
# Identity: 691/1602 (43.1%)
# Similarity: 691/1602 (43.1%)
# Gaps: 726/1602 (45.3%)
# Score: 1133.5
#
#
#=======================================
BSNT_05768___ 1 ATGGAAATAACACCGT----CCGATGTCATCAAGACACTTCCAAGGCAAG 46
|| || |.|||.|||
BL00232___avt 1 --------------GTGAAGCC---GCCATTAAG---------------- 17
BSNT_05768___ 47 AGTTTTCTCTCGTTTTTCAAAA--GGTAAAGGAAATG---GAAAAAACGG 91
||||| || |.||.||||| ||.|||||.|
BL00232___avt 18 -----------------CAAAATCGG-AGAGAAAATGATTGAGAAAACAG 49
BSNT_05768___ 92 GGGCC--------------------------------------------- 96
|||.|
BL00232___avt 50 GGGTCAGGGCTGTGATGAGCGATATTCAGGAAGTCCTGGCCGGCGGTGAA 99
BSNT_05768___ 97 ----CATATCATTAATCTCGGACAGGGGAACCC--TGACCTTCCCACTCC 140
|||| |||||||.|..|...|||.||.|| |||..||.| ||
BL00232___avt 100 CGGTCATA-CATTAATTTAAGTGCGGGCAATCCGATGATTTTGC----CC 144
BSNT_05768___ 141 GCCG-------CATATTGTGGA----GGCT-TTGCGGGAGGCTTCTC--- 175
|.|| || |||||| |||| ||||.| .||||
BL00232___avt 145 GGCGTGTCAGCCA---TGTGGAAGTCGGCTCTTGCCG-----ATCTCCTT 186
BSNT_05768___ 176 -----TGA-----ATCCTTCGTTTCATGGATACGGCCCTTTCAG---GGG 212
||| .|.|||||.| ||| |||||..|.|.| |.|
BL00232___avt 187 GACGATGACAGGTTTTCTTCGGT-----GAT-CGGCCAATACGGATCGAG 230
BSNT_05768___ 213 CTATCCTTTTTTAAAGGAAGCGAT---------------------CGCTG 241
|||| ||||.|||| ||||.
BL00232___avt 231 CTAT-----------GGAACCGATGAACTGATTGCAAGTGTTGTCCGCTT 269
BSNT_05768___ 242 CTTTCTATAAAAG-GGAATA----CGGAGTGACAATCAATCCTGAAACGG 286
|||| |.|.|| ||.||| ||| ||.|| |||| .|
BL00232___avt 270 CTTT---TCAGAGCGGTATAGCGCCGG---------CATTC--GAAA-AG 304
BSNT_05768___ 287 AGGTCGCGCT--TTTCGGAGGCGGGAAAGC------CGGTTTGTATGTGT 328
||..||.|.| ||.| ||.||| |||| |.|||| |.|.||.
BL00232___avt 305 AGAACGTGTTGATTAC--AGCCGG--AAGCCAGCAGCTGTTT-TTTCTGG 349
BSNT_05768___ 329 TGACACAATGC---CTGCTCAATCCGGGAGAC--ATC------------- 360
.|| .||||.| .|||..||| ||||..| |||
BL00232___avt 350 CGA-TCAATTCGTTTTGCGGAAT--GGGAAGCGGATCTGTGATGAAAAAA 396
BSNT_05768___ 361 GCTTTAGTCCCGAATCCAGGCTACCCTGAATATTTATCAGGGATTAC--- 407
||.||..||||| |.||| .|||||.|||| .|||| |||
BL00232___avt 397 GCCTTGATCCCG-----ATGCT-GCCTGACTATT----CGGGA-TACAGC 435
BSNT_05768___ 408 ------------GATGGCGCGAGCTGAGCTTTACGAAATGCCGCTG---- 441
|| |||.|||.||| ||.|.|..||.||.|.|
BL00232___avt 436 GGGGCGGCACTGGA--GCGGGAGATGA--TTGAGGGGATCCCTCCGCTCA 481
BSNT_05768___ 442 TATGAAGAAAATGGCT-ATCTGCCGGATTTTGAAAAGATTGATCCAGCCG 490
||| .||||.|||.| |||...|| |||.||.|.|| |.||.| |||
BL00232___avt 482 TAT--CGAAATTGGATGATCATACG--TTTCGATATGA--GCTCGA-CCG 524
BSNT_05768___ 491 TGCTGGAAAAAGCGAAGCTTATGTTTTTAAA------------------- 521
| |||.| |||||||.|
BL00232___avt 525 T--------AAGGG--------GTTTTTAGAGAGGATGCGCATCGGTGCT 558
BSNT_05768___ 522 ------CTAT-----CCGAACAATCCCACTGGAGCTGTGGCTGATGCGGC 560
|||| ||||||||||| .||||
BL00232___avt 559 GTCTTGCTATCGCGCCCGAACAATCC-----------------TTGCG-- 589
BSNT_05768___ 561 TTTTTATGCAAGAGCTGCTGCTTTTGCGAAAGAGCA--TAACATCCATTT 608
|.||.|.|| ||| |.|||||..| ||.|||.|||||
BL00232___avt 590 -------GAAACATCT--TGC-----CTAAAGAAGATGTAGCATTCATTT 625
BSNT_05768___ 609 GA------------------------------TTCA-TGATTTTGCATAC 627
.| |||| |||||..|||||.
BL00232___avt 626 CAGACGCATGCCGAGAAGCGAATGTTCCGCTGTTCATTGATTCCGCATAT 675
BSNT_05768___ 628 GGAGCG---TTTGAATTCGATCAAAAACCGGCCAGT---TTTCTTGA--- 668
|...|| ||| |||||.|.| |||.|.||
BL00232___avt 676 GCTCCGCCTTTT---------------CCGGCGATTCACTTTATCGACAT 710
BSNT_05768___ 669 GGCAGAGGATGCCAAAATTGTC--GGAGCAGAGCTTTATTCA-------- 708
||.|..| |||.|| .||||||| |.|||||
BL00232___avt 711 GGAACCG---------ATTTTCAACGAGCAGA---TCATTCACTGTATGA 748
BSNT_05768___ 709 --TTTTCAAAAACATTTAACATGGCCGGCTGGAGAATGGCGTTTGCGGTT 756
.|||||||| |||||| .||| .|
BL00232___avt 749 GCCTTTCAAAA------------GCCGGC-------------CTGC--CT 771
BSNT_05768___ 757 GGGAACGAAAGGATC---AT-----TCAGGCCGTCAATGAAT-TTCAGGA 797
|| |||||||||| || ||.|||||||...|.|| ||||||
BL00232___avt 772 GG---CGAAAGGATCGGAATCGCCATCGGGCCGTCCCGGTATATTCAGG- 817
BSNT_05768___ 798 TC-ATGTA----TTT--GTCGGCATGTTCGGCG-------------GGCT 827
| |||.| ||| ||| |.||| ||||| ||||
BL00232___avt 818 -CAATGGAAGCTTTTCAGTC-GAATG--CGGCGATCCATTCTTCAAGGCT 863
BSNT_05768___ 828 GCAGCAG---------GCAGC------GAGTG--CGGCGCTTTCTGGAGA 860
|..|||| |||.| ||.|| .||||| ||.|
BL00232___avt 864 GGGGCAGTATATGGCTGCATCAGTATTGAATGACGGGCGC---CTCG--- 907
BSNT_05768___ 861 TCCGGAGCATACG-GAATCGTTGAAACGAATT-------TATAA--GGAA 900
||| ||| | |||.|| ||.|||.| |||.| |.||
BL00232___avt 908 -CCG------ACGTG--TCGCTG-AATGAAGTCAGGCCATATTACCGCAA 947
BSNT_05768___ 901 CGAATTGACTTTTTTACGGCGCTTTGTGAAAAGGAA------TTGGGCTG 944
..||||.| |.|.||.| |||||| || .||
BL00232___avt 948 TAAATTCA------TGCTGCTC--------AAGGAAACGCTTTT---ATG 980
BSNT_05768___ 945 GAAGATG---GAAAA---------------GC--CAA----AAGGAAC-C 969
.|||||| |||.| || ||| |||||.| |
BL00232___avt 981 CAAGATGCCTGAAGACATCAAATGGTATCTGCATCAAGGGGAAGGATCGC 1030
BSNT_05768___ 970 TTTTACGTATGGGCTGAAATTCCGAATACGTTTG-AGACAT----CTCAC 1014
|||| ||.|| ||||| ..||||| ||||.| .|.||
BL00232___avt 1031 TTTT-CGGAT-GGCTG-----------TGGTTTGAAGACCTGCCGGTGAC 1067
BSNT_05768___ 1015 CAAT-------TTTCCGATTACTT-------GCTGGAG-CATGCCCATGT 1049
|.|| |.|..||.||..| |.||||| ||| |.|
BL00232___avt 1068 CGATGCAGCGCTGTATGAGTATATGAAAGCGGATGGAGTCAT-----TAT 1112
BSNT_05768___ 1050 CGT------AGTCA---------CACCG--------GGCGAAATTTTTGG 1076
||| | ||| ||||| |||| ..|||
BL00232___avt 1113 CGTTCCCGGA-TCATCTTTCTTTCACCGTCAATCCCGGCG-----CCTGG 1156
BSNT_05768___ 1077 AAGCAACGGAAAAAGGCATGTCAGAATTTCAATGGTGT---CGAAGCA-- 1121
.|||| ||| ||...|||| ||||.||
BL00232___avt 1157 --------------CGCAT-TCA------CACCAGTGTATACGAATCAGC 1185
BSNT_05768___ 1122 --------GGAGGATCTGCGGGAA---TTTGTCACGCGGATTCAA----- 1155
||.|||| ||| .||.| |.|.|||.||.|
BL00232___avt 1186 CTAACCGCGGCGGAT------GAAGATATTAT-AAGGGGAATCGATGTTT 1228
BSNT_05768___ 1156 AAGCTGAACCTGCCGTTCGGGTCATTACAAGAAAC-------ATCCCGCT 1198
.||||.||..||| ...||||...||..|||||| ||.|...|
BL00232___avt 1229 TAGCTAAAATTGC--GAAGGGTGTATATGAGAAACAGGTTGAATACTTAT 1276
BSNT_05768___ 1199 AA 1200
||
BL00232___avt 1277 AA 1278
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