Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06067 and BL00215
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:04
# Commandline: needle
# -asequence dna-align/BSNT_06067___yxeG.1.5803.seq
# -bsequence dna-align/BL00215___yxeG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06067___yxeG-BL00215___yxeG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06067___yxeG-BL00215___yxeG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06067___yxeG
# 2: BL00215___yxeG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 638
# Identity: 352/638 (55.2%)
# Similarity: 352/638 (55.2%)
# Gaps: 175/638 (27.4%)
# Score: 827.5
#
#
#=======================================
BSNT_06067___ 1 ATGAGAAATCAAA-AAGCTGAAAGACTGGT-------GGCAGCGGGGCTT 42
|...|||.|||| .|||.||.|||||..| ||||.|.|
BL00215___yxe 1 -TTGCAAAACAAAGCAGCAGACAGACTCATTTTATTAGGCATCAG----- 44
BSNT_06067___ 43 GTTTTACATATCATTCAGTGGATATTTATATTA----TGGGCTTTTCTCA 88
||||||||.|||..|.|||.|.||.||.||| || ||||.||
BL00215___yxe 45 --TTTACATAGCATATATTGGTTGTTCATTTTATTTTTG---TTTTTTC- 88
BSNT_06067___ 89 AAGTCAAACATTTATTTAG--TGAC---TATACGATCTATAACCCTAATG 133
|..||||||| |.|| |||| |||.|..|.|..||.||.||||
BL00215___yxe 89 ATTTCAAACA-----TCAGCTTGACGCTTATGCTGTTTGGAATCCAAATG 133
BSNT_06067___ 134 TCATCAG-CGGCTCCATGCAGTC-----CTTATCGTTTATAC-----AAA 172
||| |.| |||.|..|||.||.| ||| ||||...|.| ||.
BL00215___yxe 134 TCA-CGGACGGATATATGGAGGCTGGAACTT-TCGTAGCTGCGCTGAAAT 181
BSNT_06067___ 173 TGATGCGCGCTATGATGTACTCAGGGGCAATCGTGAATTATG----TTTT 218
|||||| |.||||||||..||.|..|.|||| || |.||
BL00215___yxe 182 TGATGC---------TCTACTCAGGCACATTATTTAATT-TGGGCCTCTT 221
BSNT_06067___ 219 GTT--TTTTGCCCTTGTATTGCTGAT-------TTATGGCATAG-CGCTT 258
||| ||||| |..|||||||| ||| |||.|| ||.|
BL00215___yxe 222 GTTCATTTTG-----GGCTTGCTGATAGTGATATTA--GCACAGTCGAT- 263
BSNT_06067___ 259 CATGCCATCCTGATCGTTCTGGAAATGGCGGCTTACGTCATGATCAGGCG 308
|||..|.||.|...|||||||.||.||||||||.|..||||
BL00215___yxe 264 -----CATTTTTATTGCCTTGGAAATCGCCGCTTACGTAAAAATCA---- 304
BSNT_06067___ 309 GA-----ATCCATCATCTTCATGGGGGTTCTTTTTCATT---GCGGCGGG 350
| ||||.|..|||.||| ||||.|||||| ||| |||..|||
BL00215___yxe 305 -AAAAAGATCCGTTTTCTCCAT-GGGGATCTTTT--ATTTTAGCGATGGG 350
BSNT_06067___ 351 TGTGAAGCTTGCCATCTT---GAATATAACCGGCATTCCATTTTTAGCTG 397
..|.|| ...|||.|| |||..||.|.||.|||||.|||.|.||||
BL00215___yxe 351 CATTAA---AAACATTTTCACGAACTTATCAGGGATTCCGTTTATGGCTG 397
BSNT_06067___ 398 CCGG---CTTTCT------GCTGATGAAACAGAAAAAAGCAG----AAA- 433
|||| |.|||| ||.|..|.|||.||||.|||||| |.|
BL00215___yxe 398 CCGGATTCATTCTTCATAAGCAGCAGGAACCGAAAGAAGCAGTTGTAGAG 447
BSNT_06067___ 434 ---ACGGCGTCAAGGCAGAAAGAAAGCGGAAACCGCGC-TTGCGTATCCG 479
.|||||..||| |||||.|||..||||||..|| ||||.|||
BL00215___yxe 448 CCGGCGGCGCGAAG---GAAAGCAAGGCGAAACCCTGCATTGCTTAT--- 491
BSNT_06067___ 480 AAGACAAGGGCGTCGTCTAAA--TAGAATTCGGAGAAAACCATCCCTTCC 527
||.||.||||.|| ||| |||||..||.|||||
BL00215___yxe 492 --GAAAAAGGCGGCG---AAAGCTAGAAAACGAAGAAA------------ 524
BSNT_06067___ 528 GGTTGAA--TATCAAAA-----AGAAAAAACGATATGA 558
|||| ||| ||| ||
BL00215___yxe 525 ---TGAAGGTAT--AAAGTCTTAG-------------- 543
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