Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04429 and BL00211
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_04429___ytsA.1.5803.seq
# -bsequence dna-align/BL00211___bceR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04429___ytsA-BL00211___bceR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04429___ytsA-BL00211___bceR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04429___ytsA
# 2: BL00211___bceR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 713
# Identity: 560/713 (78.5%)
# Similarity: 560/713 (78.5%)
# Gaps: 43/713 ( 6.0%)
# Score: 2245.5
#
#
#=======================================
BSNT_04429___ 1 TTGTTTAAACTTTTGCTGATTGAAGATGATGAATCGCTGTTTCATGAAAT 50
.||||||||||..||.||||.|||||||||||||||||||||||.|||||
BL00211___bce 1 ATGTTTAAACTGCTGTTGATAGAAGATGATGAATCGCTGTTTCAAGAAAT 50
BSNT_04429___ 51 CAAGGATCGTTTAACGGGATGGTCCTATGATGTATACGGCATTCAGGATT 100
.||.||.||.|||||.||.|||||.||.||.|||||||||||..|.||||
BL00211___bce 51 AAAAGAGCGGTTAACCGGGTGGTCATACGAGGTATACGGCATCAACGATT 100
BSNT_04429___ 101 TCAGTCAGGTGCTGCAGGAATTTGCGGCGGTTAATCCTGATTGTGTCATT 150
||||..|.|||.|||||||.|||||||||.||||.||.||.||.|||||.
BL00211___bce 101 TCAGCGAAGTGATGCAGGAGTTTGCGGCGATTAAGCCAGACTGCGTCATC 150
BSNT_04429___ 151 ATTGATGTACAGCTGCCTAAATTTGACGGCTTTCATTGGTGCCGGCAGAT 200
||.|||.|.|||||||||||||.||||||.||||||||||||||||||||
BL00211___bce 151 ATCGATATTCAGCTGCCTAAATATGACGGGTTTCATTGGTGCCGGCAGAT 200
BSNT_04429___ 201 CCGCTCCCGGTCAAATGTTCCGATTCTCTTTTTATCCTCCCGGGATCATC 250
|||||||||.||.||.||||||||||||||||||||.||.||.|||||||
BL00211___bce 201 CCGCTCCCGTTCCAACGTTCCGATTCTCTTTTTATCTTCGCGCGATCATC 250
BSNT_04429___ 251 CTGCTGATATGGTGATGTCCATGCAGCTCGGGGCAGATGACTTTATCCAA 300
|||||||||||||.||||||||||||.||||.||.|||||.|.|||.||.
BL00211___bce 251 CTGCTGATATGGTCATGTCCATGCAGTTCGGAGCGGATGATTATATTCAG 300
BSNT_04429___ 301 AAGCCATTTCATTTTGATGTGCTGATCGCGAAAATCCAAGCGATGTTCCG 350
|||||.|||||||||||.||||||||.||.||.|||||.|||||.|||||
BL00211___bce 301 AAGCCGTTTCATTTTGACGTGCTGATTGCCAAGATCCAGGCGATTTTCCG 350
BSNT_04429___ 351 GCGTGTGCACCATTATAATACGGAGCC-GAATACGATT------AAAACG 393
.||.||..||.|.||||||||.||||| || |||| ||||||
BL00211___bce 351 TCGCGTCTACGACTATAATACAGAGCCTGA----GATTCTTAAAAAAACG 396
BSNT_04429___ 394 TGGTGCGGCGCTGCTGTAGACGCGGAGCAGAACCTCGTCAGCAATGACAA 443
||||||||.||..|.||.||..|.||.||.||||.|||||||||| |
BL00211___bce 397 TGGTGCGGTGCAACCGTTGATCCCGAACAAAACCGCGTCAGCAAT----A 442
BSNT_04429___ 444 AG--------GATCTGTTGAACTGACCAAAAATGAAATGTTCATTCTAAA 485
|| |||| ||||||||.|..|||||||||||||||.||||
BL00211___bce 443 AGGCGGGGGCGATC----GAACTGACAAGGAATGAAATGTTCATTTTAAA 488
BSNT_04429___ 486 ACAATTAATAGAGCAAAAAAACAAGATCGTCAGCCGGGAAGAGCTGATCA 535
||||||.||.||.|||||||||||.||.||||||.|||||||..||||.|
BL00211___bce 489 ACAATTGATCGACCAAAAAAACAAAATTGTCAGCAGGGAAGAATTGATGA 538
BSNT_04429___ 536 GAAGCTTGTGGAACGATGAGCGTTTTGTTAGTGATAATACGCTGACCGTC 585
|||||.|.|||||||||||.||.|||||.||.|||||.||||||||.|||
BL00211___bce 539 GAAGCCTATGGAACGATGAACGCTTTGTCAGCGATAACACGCTGACAGTC 588
BSNT_04429___ 586 AATGTCAATCGCCTGCGAAAAAAACTGGACGCCCTGCAGCTTGGCGC-AT 634
||.||.||.|||.|..||||||||||.||.|||.|| |.|||||.|| ||
BL00211___bce 589 AACGTAAACCGCTTAAGAAAAAAACTCGATGCCTTG-AACTTGGGGCAAT 637
BSNT_04429___ 635 ATATCGAGACAAAGGTGGGCCAGGGCTACATCGCGAAGGAAG-AGGACAA 683
||||||||||.|||||.|||||||||||.||.|||||.|||| |||
BL00211___bce 638 ATATCGAGACGAAGGTCGGCCAGGGCTATATGGCGAAAGAAGAAGG---- 683
BSNT_04429___ 684 GTTCTATGATTAA 696
||||
BL00211___bce 684 -----ATGA---- 687
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