Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06221 and BL00176
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:11
# Commandline: needle
# -asequence dna-align/BSNT_06221___yycA.1.5803.seq
# -bsequence dna-align/BL00176___yycA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06221___yycA-BL00176___yycA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06221___yycA-BL00176___yycA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06221___yycA
# 2: BL00176___yycA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2199
# Identity: 1516/2199 (68.9%)
# Similarity: 1516/2199 (68.9%)
# Gaps: 261/2199 (11.9%)
# Score: 5273.0
#
#
#=======================================
BSNT_06221___ 1 ------ATGAAAACCAAACGATTCGACG-CAGCCCTTATTCTTATTTTGC 43
||.||||.|||||.|.|.||.| || ..||..||||.||||||.
BL00176___yyc 1 ATGAAAATAAAAAACAAACAACTTGATGTCA-TTCTGGTTCTAATTTTGT 49
BSNT_06221___ 44 TGGCAGCAGCTT-TTTTGAATACGTATCACATTTGGCAGGATGATACAGC 92
||||||| .||| ||.|||||||.|||.|||||||||.|||.|||.|.||
BL00176___yyc 50 TGGCAGC-TCTTATTCTGAATACATATAACATTTGGCTGGACGATGCCGC 98
BSNT_06221___ 93 GAACCAGTACTATTTGGCGGCTGTAAAAAGCATGACGCAAAGCTTCCATA 142
.||||||||.||.|||||.||.||.|||||||||||||||||||||||.|
BL00176___yyc 99 CAACCAGTATTACTTGGCAGCAGTCAAAAGCATGACGCAAAGCTTCCACA 148
BSNT_06221___ 143 ATTTCTTTTATGCGTCATTTGACCCTTCTGGATTTGTGACAGTAGATAAG 192
|||||||.|..||||||||.|||.||||.|||||.||..||||||||||.
BL00176___yyc 149 ATTTCTTCTTCGCGTCATTCGACTCTTCCGGATTCGTATCAGTAGATAAA 198
BSNT_06221___ 193 CCTCCTGTCGTGTTATGGATTCAAACGATTTTCGCACTGATTTTCGGTGT 242
||.||||||||.|||||||||||.||.||.||.||....||.|||||.||
BL00176___yyc 199 CCGCCTGTCGTTTTATGGATTCAGACTATATTTGCGAAAATCTTCGGCGT 248
BSNT_06221___ 243 TCACACGTGGAGTGTCATCATTCCCCAGGCTCTTGCCGGAGTTGGATCTG 292
.||.|||||||||||.||..|.||.|||||.|||||.||.|..||.||..
BL00176___yyc 249 GCATACGTGGAGTGTGATTTTGCCGCAGGCGCTTGCAGGGGCGGGTTCCA 298
BSNT_06221___ 293 TCTTCCTTCTCTACAGAGTGATCAAGCCGACTTTTGGAATTGGAGCGGCC 342
|||..||.||.|||..|.||||.|||||||..||.||||..||.||.|||
BL00176___yyc 299 TCTATCTGCTTTACGCACTGATAAAGCCGAAATTCGGAAAAGGCGCCGCC 348
BSNT_06221___ 343 CGCATTTCCGCACTTGTTATGGCACTGACCCCTATCGCAGTAGCTGTCAG 392
||||||||.||.||.||.|||||.|||||.||.|||||.||.||.||.||
BL00176___yyc 349 CGCATTTCAGCGCTGGTGATGGCGCTGACGCCGATCGCGGTCGCCGTAAG 398
BSNT_06221___ 393 CCGGACAAACAATATTGACAGCATGCTTGTCTTTACCATATTGCTCGGTT 442
|||.||.||.|||||.|||||||||||.|||||.||..|..|.||.|||.
BL00176___yyc 399 CCGAACGAATAATATCGACAGCATGCTCGTCTTCACGCTCCTACTTGGTA 448
BSNT_06221___ 443 CAGCTTGCCTGTTTCGGGCAGTAAAACAAGGCAAGCTGGTTTGGCTGCTG 492
||...||||||.|...|||.||.||||||||||.||||.|.|||||.||.
BL00176___yyc 449 CATGGTGCCTGATGAAGGCGGTCAAACAAGGCAGGCTGATCTGGCTTCTC 498
BSNT_06221___ 493 ACGGCATTTGCCCTAATTGGGCTCGCCTTTAATATGAAGATGATGCAAGC 542
.|.|||||.|..||.||.||.||||..||.||||||||||||.|.||.||
BL00176___yyc 499 GCTGCATTCGGTCTCATCGGCCTCGGATTCAATATGAAGATGTTTCAGGC 548
BSNT_06221___ 543 GTTTATGGTATTGCCTGCATTTGTGTTATTCTACCTGGTTG-----CAT- 586
.||.|||||..|.||.||.||..||.|.||.||.||..||| |||
BL00176___yyc 549 ATTCATGGTGCTTCCCGCGTTCTTGCTGTTTTATCTCATTGCGGCCCATG 598
BSNT_06221___ 587 ---ATCGGGTTTCTCTGAAGAAAAAAATCGGGTCCCTGCTTCTGTCTCTT 633
||.| ||||||||||||||..||...|.||.|.||.|||
BL00176___yyc 599 CGAATTG---------GAAGAAAAAAATCGTTTCAGCGGTTTTATCGCTT 639
BSNT_06221___ 634 GTCCTTCTGACAGGCCTTTCCCTCTCATGGGCGATTGCAGTGGATTCAGC 683
.|..|.||.||.|||.||||.||.||.||||||.||||.||.||
BL00176___yyc 640 ATTGTCCTCACCGGCATTTCGCTTTCTTGGGCGCTTGCGGTCGA------ 683
BSNT_06221___ 684 CTCTTCCTCA------AGCCGGCCTTATGTAGGAAGCAGCCAGACCAACT 727
||.|.|.||| |||||.||.|||||.|||||||||||.|||||||
BL00176___yyc 684 CTATACATCAGCCGACAGCCGCCCGTATGTCGGAAGCAGCCAAACCAACT 733
BSNT_06221___ 728 CAGTGCTAGAACTGGCCTTTGGCTACAACGGCACAGAGCGTCTGCTTGGG 777
|.|||||.||||||||.||.||||||||||||||.|||||.||.||.||.
BL00176___yyc 734 CTGTGCTTGAACTGGCTTTCGGCTACAACGGCACTGAGCGGCTTCTCGGC 783
BSNT_06221___ 778 CAAACTACGGGCCTGGCAAAG-----GGTGATATGAATGCTGC--TGGCG 820
||.||.||| |||||.| ||.|||||||| |.|| |||.|
BL00176___yyc 784 CAGACGACG-----GGCAACGCCCGCGGCGATATGAA--CGGCTTTGGAG 826
BSNT_06221___ 821 GAGGGAAGATGCAGAATCAAGACAACATGCAAGC-GCCAAATGGCAACG- 868
||| |||||| ||| |||.||.|||||.|
BL00176___yyc 827 GAG---------------------ACATGC-AGCAGCCGAACGGCAATGC 854
BSNT_06221___ 869 ----GTTCATCTTTTTCTCAGAACGGAAATCAATCATTCGGAAACCATTC 914
| |||||||||||||.|..||.|.|||
BL00176___yyc 855 GCAAG-----------CTCAGAACGGAAACCGTTCGTCCGG--------- 884
BSNT_06221___ 915 ACATGCGCCTCAGCCGTCTAACGGACAAACCGGCGC-------------- 950
|.|| ||.||.|||||||.||||||
BL00176___yyc 885 ----------CGGC--TCCAATGGACAAAACGGCGCGATGCAGCCGCCGG 922
BSNT_06221___ 951 --------------------------TCTCAATGG--------------- 959
||||||.||
BL00176___yyc 923 GTGCGGGCGGTTCGGCAGACGGCAGTTCTCAAGGGGCAAACGGCGGCAGC 972
BSNT_06221___ 960 --------AGGCGGAGGCACACCTCCCACAGGTGGCAA---CGGTCCTGG 998
||.|||||||..|||...| ||.||||| ||||||.||
BL00176___yyc 973 CAGCAGCCAGCCGGAGGCGGACCGGGC---GGAGGCAACGGCGGTCCCGG 1019
BSNT_06221___ 999 A---AATGGAGGGCCTGGCGG------TGGAGGCGGAAAAAGCGTGAATA 1039
| |||||.||.||.||||| .||.||||||.|||||.||||.|
BL00176___yyc 1020 AGGCAATGGCGGCCCAGGCGGAGGTCAAGGCGGCGGACAAAGCATGAACA 1069
BSNT_06221___ 1040 TGTTCGGCACCGGTGATCCTGGACCGCTTCGTCTTTTCCAATCAGCACTC 1089
||||||||||||||||..|.||||||||..|.||.||||||||.||..|.
BL00176___yyc 1070 TGTTCGGCACCGGTGACGCAGGACCGCTGAGGCTCTTCCAATCGGCTTTA 1119
BSNT_06221___ 1090 TCCGGCCAAATCAGCTGGATGCTTCCATTCTCATTGATCGGATTACTGGG 1139
||.||||||||||||||||||||.|||||..||||..|.|||.|.||.||
BL00176___yyc 1120 TCGGGCCAAATCAGCTGGATGCTCCCATTTGCATTATTAGGACTGCTCGG 1169
BSNT_06221___ 1140 CGCAATCGTCAGCTGGTACCGTGATCGCCGCGGACATGCTGCTGAAATGA 1189
|.|.|||.|||.|||||..||.|..|||||||.|.|.||.|..|||||||
BL00176___yyc 1170 CACGATCATCACCTGGTTTCGCGGCCGCCGCGAAAAAGCAGGCGAAATGA 1219
BSNT_06221___ 1190 AAGAAACGCTATTCTGGGCGGCTTGGCTTGTTCCCGTGGCTGGTTTCTTC 1239
||||||||.|.||.|||.|.||.|||||.|||||.||.||.||.||||||
BL00176___yyc 1220 AAGAAACGATCTTTTGGTCTGCATGGCTCGTTCCTGTCGCCGGGTTCTTC 1269
BSNT_06221___ 1240 AGCATCGCAGGATTCTTCCACCAGTATTATTTGATTATGCTGGCACCGCC 1289
||||||||.||||||||||||||.||.||.|||||||||.||||.|||||
BL00176___yyc 1270 AGCATCGCCGGATTCTTCCACCACTACTACTTGATTATGATGGCGCCGCC 1319
BSNT_06221___ 1290 GATTGCCGCCCTTTCTGGTATCGGATGGTATACGATGCACCGCTTATACA 1339
|||.|||||.||.||.||.|||||||||||..|||||.||.||.|.||||
BL00176___yyc 1320 GATCGCCGCTCTGTCAGGAATCGGATGGTACGCGATGTACGGCCTTTACA 1369
BSNT_06221___ 1340 AAAATAATAAAGACTGGTCCAGCTATCTTCTGCCGGCAGCCGTTCTGATC 1389
|.|||.|||||||||||.|.||||||||.|||||||||||||||||.|..
BL00176___yyc 1370 ACAATCATAAAGACTGGGCAAGCTATCTGCTGCCGGCAGCCGTTCTCACG 1419
BSNT_06221___ 1390 ACAGCCGCGTTCCAGGTGTATATTCTGAGTGCTTATACAAGCCAAATCGG 1439
|||||.||.|||||.|||||.|||.|.||.||||||||||.|||||||||
BL00176___yyc 1420 ACAGCAGCATTCCAAGTGTACATTTTAAGCGCTTATACAAACCAAATCGG 1469
BSNT_06221___ 1440 CAGTGTATGGATGTATGTCCTGGGGCTCTTAGGACTGGGCATCACCCTTG 1489
|||.|..||||||||||||.||||..||.|.||.|||||..|||||.|.|
BL00176___yyc 1470 CAGCGCTTGGATGTATGTCATGGGAATCCTGGGGCTGGGTGTCACCATCG 1519
BSNT_06221___ 1490 CACTT-CTGATGCTTAAACGCAGCCATCCGTTCAGTAAGCAGCTGACCAT 1538
| ||| ||.|||||.||.||..|||||||.|||.|.||||||||.|||||
BL00176___yyc 1520 C-CTTACTAATGCTGAAGCGACGCCATCCATTCGGAAAGCAGCTCACCAT 1568
BSNT_06221___ 1539 CATCAGCTTGTGCGTTCTGCTTCTCACACCAGTTTACTGGTCAGCAACGC 1588
|||||||||||||||.||.|||.|.|||||.||.||.|||||.|||||.|
BL00176___yyc 1569 CATCAGCTTGTGCGTGCTTCTTTTGACACCGGTCTATTGGTCGGCAACAC 1618
BSNT_06221___ 1589 CGCTTCTATACGGTGGCAACAGCGTCCTTCCTGAATCCGGCCCGCAGCT- 1637
||.|.||.|||||.||.||||||||.|||||||||||.||.||.|||||
BL00176___yyc 1619 CGATCCTTTACGGAGGGAACAGCGTTCTTCCTGAATCAGGGCCTCAGCTG 1668
BSNT_06221___ 1638 CAAAGGCTCAGCAAACGGCG--GGAACATGTTCTCTTCAGAGGTCGACAG 1685
|||| ||| |.|||||.| ||| ||||||...||.||.||.||||.
BL00176___yyc 1669 CAAA-GCT---CCAACGGAGGCGGA--ATGTTCAGCTCGGACGTGGACAC 1712
BSNT_06221___ 1686 CGGGCTCCTGTCCTA--TCTGAGAAAACACAATACCGGCGAAGAATATTT 1733
.||.||.||..|.|| ||.|.|||| |.||||||||||||||.||..|
BL00176___yyc 1713 AGGACTGCTCACATACCTCCGGGAAA--ATAATACCGGCGAAGAGTACCT 1760
BSNT_06221___ 1734 ATTTGCTACTTTGACAACCGTAACAGCTGCGCCATACATCAT------TT 1777
.||.||.||.||||||||.|||||.||.||..|.||.||||| ..
BL00176___yyc 1761 TTTCGCGACATTGACAACGGTAACCGCAGCCACGTATATCATCAATGCCG 1810
BSNT_06221___ 1778 ACGAAAATGAATCTGTTATGGCAATGGGCGGATTTAACGGCACGGATCCC 1827
||||||| |||.|||||..|.||.||.||.||||||||.||.||.
BL00176___yyc 1811 ACGAAAA------TGTCATGGCGCTCGGAGGCTTCAACGGCACAGACCCG 1854
BSNT_06221___ 1828 ATTCTGACTGT--GTCGGAACTGAAAAAACTGATCAAAGAAGGCAAAGTG 1875
||.|||.|.|| || |||||||||||.||.||||||.||||.|.|||.
BL00176___yyc 1855 ATCCTGTCGGTCAGT--GAACTGAAAAACCTCATCAAAAAAGGAAGAGTA 1902
BSNT_06221___ 1876 AAATACTTCCT--TCTGTCAGAAAACAACTCAGGCAACAGCGAACTTGTT 1923
||||||||||| |..|| ||| |||||||||||||||||.||.||.
BL00176___yyc 1903 AAATACTTCCTGATTAGT--GAA---AACTCAGGCAACAGCGAGCTCGTC 1947
BSNT_06221___ 1924 TCCTGGATTAAGAAAAACGGAAAAGAAATAACATCTGACGAGTACAGCGG 1973
||||||||.||..|||||||||..|||||..|.||||||.|.||||||.|
BL00176___yyc 1948 TCCTGGATCAAAGAAAACGGAACCGAAATTTCGTCTGACCAATACAGCAG 1997
BSNT_06221___ 1974 TTCCTCCAG-CAGC-ACGAACAGCGTGCAGGGAATGC--GAGGAGGACCT 2019
|.||| |||| .||.||| |||||| ||| ||||.||.||.
BL00176___yyc 1998 ----TACAGACAGCTTCGCACA----GCAGGG--TGCAAGAGGCGGCCCA 2037
BSNT_06221___ 2020 GGCGG-AGAAAGCCAGCAAACTC---------TTTATCTCGTGGAATAA 2058
||||| .||.|| |.||||||.| ||.|.|| ||.|
BL00176___yyc 2038 GGCGGCGGACAG-CGGCAAACGCTCTACAAGGTTGAGCT-GTAG----- 2079
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