Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00750 and BL00142

See Amino acid alignment / Visit BSNT_00750 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:23
# Commandline: needle
#    -asequence dna-align/BSNT_00750___ydaQ.1.5803.seq
#    -bsequence dna-align/BL00142.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00750___ydaQ-BL00142.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00750___ydaQ-BL00142.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00750___ydaQ
# 2: BL00142
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 304
# Identity:     167/304 (54.9%)
# Similarity:   167/304 (54.9%)
# Gaps:          86/304 (28.3%)
# Score: 418.5
# 
#
#=======================================

BSNT_00750___      1 ATGATGTCAGTATTTATTCTGTTTTATTTGTGGATTGTTCCTATCGTTAT     50
                        |||..|||||||||.|||||||||.|.||||||||.||..||||.||
BL00142            1 ---ATGAAAGTATTTATACTGTTTTATCTATGGATTGTCCCGCTCGTCAT     47

BSNT_00750___     51 CGGCATTTTATGTTCT----GTTGCTGCCCATAGATCCAAGGGA------     90
                     |||..|..||| ||.|    |||           |.|||..|||      
BL00142           48 CGGGCTGATAT-TTTTCCGGGTT-----------ACCCAGCGGACAAGTT     85

BSNT_00750___     91 --AAAATGAGAGTCGCGCCCGG---CATTGCCATGATCGTGCT-------    128
                       ||||..||..|....||.||   |||   |||||||||.||       
BL00142           86 TTAAAAAAAGGTTTTATCCAGGCTACAT---CATGATCGTTCTTGCTGCG    132

BSNT_00750___    129 -CAGTATTATTTCCCTAATCACGGCGTTTAC--GGCCGGACACACAAATT    175
                      |.||||  ||.||.|     |.||   |||  |..||||||..|   ||
BL00142          133 GCTGTAT--TTGCCGT-----CTGC---TACTTGATCGGACAGCC---TT    169

BSNT_00750___    176 TCCACGTG---TTTATCGGCGGCATGTTTTTATTCGGCACCTTCTTGGTC    222
                     .||.||.|   ||..|||||||.|.|.|..|.|||||||||         
BL00142          170 ACCTCGGGAATTTCTTCGGCGGTACGATGCTGTTCGGCACC---------    210

BSNT_00750___    223 GGTTCTGCTTTTCC-TTTCTTCTTCGGGCTG-----AAGAAAAAAGAGAA    266
                         ||||  |.|| |||.|      |||||     |.|||.|||.||||
BL00142          211 ----CTGC--TGCCGTTTAT------GGCTGCCGCAATGAAGAAAAAGAA    248

BSNT_00750___    267 ATAA    270
                     ||||
BL00142          249 ATAA    252


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