Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00367 and BL00138

See Amino acid alignment / Visit BSNT_00367 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:02
# Commandline: needle
#    -asequence dna-align/BSNT_00367___csgA.1.5803.seq
#    -bsequence dna-align/BL00138___csgA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00367___csgA-BL00138___csgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00367___csgA-BL00138___csgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00367___csgA
# 2: BL00138___csgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 266
# Identity:     173/266 (65.0%)
# Similarity:   173/266 (65.0%)
# Gaps:          34/266 (12.8%)
# Score: 545.5
# 
#
#=======================================

BSNT_00367___      1 ATGGATGTTACACTCGGTTATTTGCGCGAATCACTTTCGAATCATCTAGA     50
                     |||||....|||.|.||.||..|.||.||.|||||.||||||||.||.||
BL00138___csg      1 ATGGACACAACATTGGGCTACCTCCGTGAGTCACTGTCGAATCACCTTGA     50

BSNT_00367___     51 AAATGAAGTCTGCCAGCGT----------ATTTGCAAGAAGA------TG     84
                     |.|          |.||.|          ||||.| ||||.|      |.
BL00138___csg     51 ACA----------CGGCATAGGACAAAACATTTAC-AGAAAAATCGTTTC     89

BSNT_00367___     85 CTGGCGAAGCATTATGCAAATGAAGAGGAATTTGTAAAAGACTTAGATGA    134
                     |.|||||     |||||.|||||.||.||.|||||..|..||||.||.||
BL00138___csg     90 CGGGCGA-----TATGCCAATGAGGAAGAGTTTGTCGAGCACTTGGAGGA    134

BSNT_00367___    135 TAATGAAATGTCTTTTTTGAACCATGTATTAGAAAAAGAAATTAAGTATG    184
                     ....||||||...|||.||||.||.||..|.|||.|.||.||.||.||||
BL00138___csg    135 GCGGGAAATGGAATTTCTGAATCAAGTGCTTGAACATGAGATGAAATATG    184

BSNT_00367___    185 CCCAGAATGAACAGGATCAAAAACGGGCCAAG-GAATTAAACGAGGTGTA    233
                     |.|.||||||||||||.||.|||| ||.|||| |||||||||||.|||||
BL00138___csg    185 CGCTGAATGAACAGGACCATAAAC-GGACAAGAGAATTAAACGAAGTGTA    233

BSNT_00367___    234 TGAATTACTGCTTTGA    249
                     ||||.|.|||.|||||
BL00138___csg    234 TGAACTGCTGTTTTGA    249


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