Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06256 and BL00131
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:13
# Commandline: needle
# -asequence dna-align/BSNT_06256___yyaL.1.5803.seq
# -bsequence dna-align/BL00131___yyaL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06256___yyaL-BL00131___yyaL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06256___yyaL-BL00131___yyaL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06256___yyaL
# 2: BL00131___yyaL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1970
# Identity: 1400/1970 (71.1%)
# Similarity: 1400/1970 (71.1%)
# Gaps: 172/1970 ( 8.7%)
# Score: 4856.5
#
#
#=======================================
BSNT_06256___ 1 ATGGCCCACGAAAGCTTTGAAGATGAAGAAATCGCGCGTCTTCTCAATGA 50
|||||.||.||||||||.||||||||||||.|.|||...|||||.|||||
BL00131___yya 1 ATGGCTCATGAAAGCTTCGAAGATGAAGAAGTTGCGAAGCTTCTGAATGA 50
BSNT_06256___ 51 ACGGTTTGTGGCGATTAAAGTCGACCGGGAAGAGCGGCCGGATGTGGATT 100
....||.||..|.||||||||.|||||.||.||||||||.||||||||||
BL00131___yya 51 GAAATTCGTCTCCATTAAAGTGGACCGCGAGGAGCGGCCTGATGTGGATT 100
BSNT_06256___ 101 CTGTTTATATGAGAATCTGCCAGCTGATGACCGGGCAGGGCGGCTGGCCG 150
|..|||||||||..|||||||||.|||||||.||||||||||||||||||
BL00131___yya 101 CGATTTATATGACGATCTGCCAGATGATGACGGGGCAGGGCGGCTGGCCG 150
BSNT_06256___ 151 CTGAATGTGTTTATCACGCCTGATCAGAAGCCGTTTTACGCGGGTACATA 200
||||||||||||.|.||.||||||||||||||||||||.|||||||||||
BL00131___yya 151 CTGAATGTGTTTTTAACCCCTGATCAGAAGCCGTTTTATGCGGGTACATA 200
BSNT_06256___ 201 TTTTCCAAAGACGAGCAAATTCAATCGTCCCGGTTTTGTTGATGTGCTTG 250
||||||.|||||||||...||.||.|||||.||.||||||||.|||.|..
BL00131___yya 201 TTTTCCGAAGACGAGCCGTTTTAACCGTCCGGGGTTTGTTGAGGTGGTGA 250
BSNT_06256___ 251 AGCATCTGTCTGAGACGTTTGCGAACGACCGCGAGCATGTCGAGGATATT 300
||||.||.||.||.||.||.|||||..||||.||||||||.||.||||||
BL00131___yya 251 AGCAGCTTTCCGATACCTTCGCGAAAAACCGGGAGCATGTTGAAGATATT 300
BSNT_06256___ 301 GCGGAGAACGCCGCTAAACATTTGCAGACCAA-AAC---AGCCGCCAAAT 346
||.||.||.|| |.|||| ||| || |||
BL00131___yya 301 GCCGAAAAAGC---------------GGCCAACAACCTGAG------AAT 329
BSNT_06256___ 347 C-AGGCGAAGGCCTTAGCGA-GTCAGCGATTCAC---------------- 378
| |.||||| .||||| |.|.|||||||.|
BL00131___yya 330 CAAAGCGAA-----AAGCGATGCCGGCGATTCGCTCGGCGAAGACATATT 374
BSNT_06256___ 379 ----CGGACATTCCAGCAGCTTGCCAGCGGGTTTGATACGATCTACGGCG 424
|||||.|..||||||||...||.|.|.||||||.||...|||||||
BL00131___yya 375 GAGGCGGACGTATCAGCAGCTGATCAACAGCTTTGATGCGGCGTACGGCG 424
BSNT_06256___ 425 GTTTCGGGCAG-GCACCGAAATTTCCGATGCCCCATATGCTGATGTATTT 473
||||| ||||| ||.|||||||||||.||.|||||||||||||..|.|.|
BL00131___yya 425 GTTTC-GGCAGCGCGCCGAAATTTCCAATCCCCCATATGCTGACATTTCT 473
BSNT_06256___ 474 GCTTCGTTATCATCACAATAC-GGGGC-AGGAGAACGCTTTATACAACGT 521
||||||.|||||| |||||| |.||| ||||||||||..|.||||.|||
BL00131___yya 474 GCTTCGCTATCAT--CAATACAGCGGCGAGGAGAACGCGCTGTACAGCGT 521
BSNT_06256___ 522 GACGAAAACGCTGGACAGCATGGCGAATGGCGGCATTTACGATCATATCG 571
||.|||||||.||||||||||||||||.||||||||||||||.|||.|||
BL00131___yya 522 GATGAAAACGTTGGACAGCATGGCGAACGGCGGCATTTACGACCATGTCG 571
BSNT_06256___ 572 GCTATGGGTTCGCCCGCTATTCGACCGATGACGAGTGGCTCGTTCCCCAT 621
||||.|||||.||||||||||||||.||||||||.|||||.||||||||.
BL00131___yya 572 GCTACGGGTTTGCCCGCTATTCGACAGATGACGAATGGCTTGTTCCCCAC 621
BSNT_06256___ 622 TTTGAAAAAATGCTGTACGACAATGCGCTGCTGCTGACCGCTTATACAGA 671
||||||||||||||.|||||.|||||..|..||||||.|||.|||||.||
BL00131___yya 622 TTTGAAAAAATGCTTTACGATAATGCTTTATTGCTGATCGCATATACTGA 671
BSNT_06256___ 672 AGCCTATCAGGTCACGCAAAACAGCCGCTATAAAGAGATTTGTGAGCAGA 721
|||||||||..|||||.|||||...||.||||||.||||||..|||||||
BL00131___yya 672 AGCCTATCAAATCACGAAAAACGAACGGTATAAACAGATTTCCGAGCAGA 721
BSNT_06256___ 722 TCATTACGTTCATTCAGAGGGAAATGACTCATGAAGACGGAA----GCTT 767
||||.||.||..|.|...|.||||||||..|||| ||| ||||
BL00131___yya 722 TCATCACATTTGTCCGCCGCGAAATGACCGATGA-----GAAAGGCGCTT 766
BSNT_06256___ 768 TTT-CTCTGCTTTAGACGCGGATACAGAAGGAGAAGAAGGAAAGTACTAC 816
||| .||.||..|.||.||.||.||.|||||.|.|||.||.||.||.||.
BL00131___yya 767 TTTATTCAGCGCTTGATGCCGACACGGAAGGCGTAGAGGGCAAATATTAT 816
BSNT_06256___ 817 GTGTGGTCAAAGGAAGAAATTCTGAAAACGCTCGGGGACGATCTCGGAAC 866
|||||||||||.||||||.|.||..|||||||.||.||.||.||.|| |
BL00131___yya 817 GTGTGGTCAAAAGAAGAAGTCCTTGAAACGCTTGGAGATGAACTTGG--C 864
BSNT_06256___ 867 G--CTGTATTGCCAAGTGTATGACATCACTGAAGAAGGAAACTTTGAAGG 914
| .||||||||...||.||..|||||||..|||||||.||.||||||||
BL00131___yya 865 GAATTGTATTGCGCGGTCTACAACATCACGCAAGAAGGGAATTTTGAAGG 914
BSNT_06256___ 915 CAAAAATATTCCTAACCTCATTCACACAAAGTGGGAACAAATCAAAGCCG 964
|.|.||||||||.|||.|.||..||||.|.|..||||.|.|||||.|..|
BL00131___yya 915 CCATAATATTCCAAACTTGATCTACACCAGGCTGGAAGACATCAAGGATG 964
BSNT_06256___ 965 ATGCCGGGTTAACCGAAAAAGAGC-TCAGTCTCAAACTCGAAGAAGCAAG 1013
|...||.|.|.||.||..|||||| |||| ..|||.||.||||||||.||
BL00131___yya 965 AATTCGCGCTGACAGATGAAGAGCTTCAG-AACAAGCTTGAAGAAGCGAG 1013
BSNT_06256___ 1014 -ACAGCAGC-TCTTGAAGACACGCGAGGAAAGAACCTATCCGCATGTCGA 1061
||| .||| |.||||| |.|||..||||||||||.|||||.||||||||
BL00131___yya 1014 AACA-AAGCTTTTTGAA-AAACGTCAGGAAAGAACGTATCCTCATGTCGA 1061
BSNT_06256___ 1062 TGATAAAGTGCTTACCTCATGGAACGCGCTGATGATCGCGGGTCTTGCGA 1111
.|||||||||||.||.||.||||||||.||||||||||||||||||||.|
BL00131___yya 1062 CGATAAAGTGCTGACTTCTTGGAACGCTCTGATGATCGCGGGTCTTGCCA 1111
BSNT_06256___ 1112 AAGCGGCAAAGGTATACCAGGAACCGAAATATCT---------------- 1145
|||||||.||.||.|||.|.|..||..||||.||
BL00131___yya 1112 AAGCGGCGAAAGTCTACAATGCGCCCGAATACCTGGAGATGGCGCGAGCT 1161
BSNT_06256___ 1146 -CAGCCTAGCGAAAGACGCCATCACATTTATTGAAAACAAATTAATCATC 1194
|||||.|| |||||.||.||.|||||.|| ||
BL00131___yya 1162 GCAGCCGAG-----------------TTTATCGAGAATAAATTGAT--TC 1192
BSNT_06256___ 1195 --GACGGCCGTGTAATGGTCCGATATCGAGACGGCGAAGTGAAAAACAAA 1242
|||||.||..|.||||||||.||.||.||||||||.||||||||.|||
BL00131___yya 1193 AAGACGGTCGCATCATGGTCCGCTACCGTGACGGCGAGGTGAAAAATAAA 1242
BSNT_06256___ 1243 GGCTTTATCGACGATTACGCTTTTCTCCTATGGGCTTATCTGGATCTCTA 1292
||.||||||||.||.|||||.||.||.||.|||||.||..|.||..|.||
BL00131___yya 1243 GGATTTATCGATGACTACGCCTTCCTGCTGTGGGCCTACATCGAATTGTA 1292
BSNT_06256___ 1293 TGAAGCTTCGTTTGATCTTTCTTATTTACAAAAAGCGAAGAAACT-GA-- 1339
||||||.||..|||||.|..|..||||.|.||||||.||.||.|| ||
BL00131___yya 1293 TGAAGCATCACTTGATTTAACCGATTTGCGAAAAGCCAAAAAGCTCGAAG 1342
BSNT_06256___ 1340 CAGACGATATCATCA----GCTTATTTTGGGATGAGGAGCATGGCGGATT 1385
|||| |||.| || |.||.||||||||.|||||.|||||.||
BL00131___yya 1343 CAGA------CATGAAGGGGC-TGTTCTGGGATGAAGAGCACGGCGGTTT 1385
BSNT_06256___ 1386 CTACTTCACCGGACACGATGCAGAAGCCTTAATCGTACGGGAAAAAGAAG 1435
.||.||.||.|||..||||||.||.||.||.|||||.|||||.|||||||
BL00131___yya 1386 TTATTTTACGGGAAGCGATGCCGAGGCTTTGATCGTGCGGGATAAAGAAG 1435
BSNT_06256___ 1436 TGTACGACGGCGCCGTGCCTTCCGGAAACAGTGTGGCGGCTGTTCAGCTG 1485
|.||||||||||||.|.||.|||||||||.|.||...|||.||.||||||
BL00131___yya 1436 TATACGACGGCGCCCTCCCGTCCGGAAACGGCGTCCTGGCCGTGCAGCTG 1485
BSNT_06256___ 1486 CTGCGTCTCGGGCAAG-TCACAGGCGACTCATCACTAATTGAAAAAGCAG 1534
...||.|| |||||.| |.||.|||||||..||.||...|||..||||.|
BL00131___yya 1486 TCCCGGCT-GGGCAGGCTGACTGGCGACTTGTCGCTCCATGATCAAGCGG 1534
BSNT_06256___ 1535 AAACGATGTTTTCCGTGTTCAAGCCAGACATCGACGCGTATCCGAGCGGC 1584
.||..||||||.|.|..|||.|...||||.||...||.||||||||||||
BL00131___yya 1535 CAAAAATGTTTGCTGCCTTCCATGGAGACGTCTCTGCTTATCCGAGCGGC 1584
BSNT_06256___ 1585 CATGCTTTCTTTATGCAAAGTGTATTAAGACATCTGATGCCTAAGAAAGA 1634
|||.|...||||.|.|||.||.|..|.||.||..|.|||||..|.||.||
BL00131___yya 1585 CATACAAACTTTCTCCAAGGTTTGCTGAGCCAATTCATGCCGCAAAAGGA 1634
BSNT_06256___ 1635 AATCGTGATTTTTGGAAGTGCAGAC-----GATCCAGCCAGAAAACAAAT 1679
||||||..|..|.||| |.|| |||||.|.||||.|..|.||
BL00131___yya 1635 AATCGTTGTGCTCGGA-----AAACGGAATGATCCGGACAGACAGAAGAT 1679
BSNT_06256___ 1680 CATAACAGAGC--TCCAAAAAGCCTTTAAGCCTAACGACTCCATTCTGGT 1727
|.|| ||.|| |.||..|.|||||..||||.||..|..||.|.||.|.
BL00131___yya 1680 CGTA--AGCGCTTTGCAGCAGGCCTTCCAGCCGAATTATGCCGTCCTCGC 1727
BSNT_06256___ 1728 AGCAGAGCAT--CCTGATCAATGCAAAGACATTGCGCCA-TTCGCGGCAG 1774
.||||| || |||||..|.|.|||||..||||| |.| ||.|||||.|
BL00131___yya 1728 CGCAGA--ATCGCCTGACGATTTCAAAGGGATTGC-CGACTTTGCGGCCG 1774
BSNT_06256___ 1775 ACTAC--CGCA-TC-ATAGACGGCAAAACAACCGTGTATATTTGTGAAAA 1820
|.||| .||| || ||| .||||||.||.||.||||||||||||||
BL00131___yya 1775 AATACAAAGCAGTCGATA----ACAAAACGACTGTCTATATTTGTGAAAA 1820
BSNT_06256___ 1821 CTTCGCCTGCCAGCAGCCGACAACGAATATCGAAGAAGCCATCCACACGT 1870
.|||||||||..|||||||||.||||||||.||.|||||..||
BL00131___yya 1821 TTTCGCCTGCAGGCAGCCGACGACGAATATAGACGAAGCGCTC------- 1863
BSNT_06256___ 1871 TAATAAGCAGCAGGGATTAA 1890
.|.|||| .||.||||
BL00131___yya 1864 ----GATCAGC-TGGTTTAA 1878
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