Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03831 and BL00126
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:54
# Commandline: needle
# -asequence dna-align/BSNT_03831.1.5803.seq
# -bsequence dna-align/BL00126___nucB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03831-BL00126___nucB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03831-BL00126___nucB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03831
# 2: BL00126___nucB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 437
# Identity: 266/437 (60.9%)
# Similarity: 266/437 (60.9%)
# Gaps: 88/437 (20.1%)
# Score: 836.0
#
#
#=======================================
BSNT_03831 1 -----------ATGG-----------------TTCCGCA-----ACAGAT 17
|||| ||||||| ||.|.|
BL00126___nuc 1 ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTACTGCT 50
BSNT_03831 18 ---------------CCAAGGCGCATCTTC-------------------- 32
| |.|||||.|||
BL00126___nuc 51 TGGGCTTTCGGGAGGC---GCCGCATATTCTCCTCAGCATGCCGAAGGTG 97
BSNT_03831 33 -------GTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAA 75
|||||||.|..|.||.|||||||||...||.||.|||||.|||
BL00126___nuc 98 CTGCAAGGTATGACGACATATTGTATTTTCCGGCATCACGCTATCCCGAA 147
BSNT_03831 76 ACCGGCAGTCATATTAGAGATGCGATTGCAGAG--GGACATCCAGATATT 123
||||||..||||||.||.||.||.|| ||.|| ||.|||.|||||.|.
BL00126___nuc 148 ACCGGCGCTCATATCAGCGACGCAAT--CAAAGCAGGGCATTCAGATGTC 195
BSNT_03831 124 TGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAA 173
||.||.|||||.|||...|||||.||.||..|.||..|||||||..|.||
BL00126___nuc 196 TGCACGATTGAAAGATCGGGAGCGGATAAGCGCCGCCAGGAATCACTGAA 245
BSNT_03831 174 GGGAATCCCGACCAAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGG 223
|||.||.|||||.||||||||||.||||||.||.||.|||||||||||..
BL00126___nuc 246 GGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCA 295
BSNT_03831 224 TCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGACGC-CTTC 272
|.||.||.|||||.|||..|||.||...||||.|||||||.| || |.||
BL00126___nuc 296 TGTGTGAAGAAGGGGGCAAAGGAGCGTCTGTCAGATATGTCA-GCTCATC 344
BSNT_03831 273 TGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCA-AATGAGCAGCTAT 321
.|||||.|||||.||||||||.|||||.||||| || ..||||| |.|.|
BL00126___nuc 345 GGATAACCGCGGAGCCGGCTCCTGGGTCGGGAA-CAGGCTGAGC-GGTTT 392
BSNT_03831 322 C-CTGACGGCACCAGAGTGCTGTTTATTGTGCAGTAG 357
| |.|||||.||.|||.|..|||||||.||.||.||.
BL00126___nuc 393 CGCCGACGGGACGAGAATTTTGTTTATCGTTCAATAA 429
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