Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01069 and BL00119
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:35
# Commandline: needle
# -asequence dna-align/BSNT_01069___ydjK.1.5803.seq
# -bsequence dna-align/BL00119___iolT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01069___ydjK-BL00119___iolT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01069___ydjK-BL00119___iolT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01069___ydjK
# 2: BL00119___iolT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1453
# Identity: 1038/1453 (71.4%)
# Similarity: 1038/1453 (71.4%)
# Gaps: 62/1453 ( 4.3%)
# Score: 3630.0
#
#
#=======================================
BSNT_01069___ 1 ATGAATAAACAAGGCAATCAAATGTCATTTTTACGTACAATTATTTTAGT 50
||||||.||||.||.|||||.|..||||||||.|||||.|||||||||||
BL00119___iol 1 ATGAATGAACAGGGAAATCAGAAATCATTTTTGCGTACTATTATTTTAGT 50
BSNT_01069___ 51 CTCCACTTTCGGCGGGCTTCTTTTTGGCTATGATACCGGTGTGCTCAATG 100
|||.||.||||||||||||||.||.||.|||||||||||.||..||||.|
BL00119___iol 51 CTCGACGTTCGGCGGGCTTCTATTCGGGTATGATACCGGAGTAATCAACG 100
BSNT_01069___ 101 GAGCTTTGCCGTATATG------GGAGAGCCGGATCAGCTTAATCTCAAT 144
||||.|||||.|||||| ||| ||||||||.||.||.|..
BL00119___iol 101 GAGCCTTGCCTTATATGTCTGAAGGA------GATCAGCTGAACCTGACA 144
BSNT_01069___ 145 GCCTTCACAGAGGGCCTTGTCACCAGTTCACTTCTTTTTGGAGCGGCACT 194
||.||.|||||.||..|.|||.|.|||||.|||||..|.|||||.|||.|
BL00119___iol 145 GCATTTACAGAAGGATTGGTCGCGAGTTCGCTTCTCCTGGGAGCCGCATT 194
BSNT_01069___ 195 GGGTGCTGTGTTTGGCGGCAGGATGTCTGATTTTAACGGCCGCCGCAAAA 244
|||.||.|||||.|||||.|||.|.||.||||.||.|||.||||||||.|
BL00119___iol 195 GGGAGCGGTGTTCGGCGGAAGGCTATCCGATTATATCGGACGCCGCAAGA 244
BSNT_01069___ 245 ATATTTTGTTCCTCGCTGTTATATTTTTTATTTCAACGATTGGGTGTACG 294
|.||..|.||.||.|||||..|.||.|||.|.||.|||.||||.||||||
BL00119___iol 245 ACATCATTTTTCTAGCTGTACTTTTCTTTTTCTCGACGCTTGGATGTACG 294
BSNT_01069___ 295 TTTGCTCCAAATGTTACGGTCATGATTATTTCCCGTTTTGTGCTTGGTAT 344
.||||.||..||||.|||||.|||.||||.||.||.||..||||.||..|
BL00119___iol 295 CTTGCGCCTGATGTGACGGTTATGGTTATCTCACGGTTCCTGCTCGGAGT 344
BSNT_01069___ 345 TGCGGTCGGGGGTGCATCCGTAACGGTGCCTGCCTATTTAGCAGAGATGT 394
|||.||.||.||.|||||.||.||.||.||..|.||.||.||.||.||||
BL00119___iol 345 TGCCGTAGGAGGAGCATCTGTTACAGTCCCGACTTACTTGGCTGAAATGT 394
BSNT_01069___ 395 CTCCTGTGGAAAGCAGGGGACGGATGGTGACGCAGAACGAATTGATGATT 444
|||||...||||..||||||||.|||||.||.||.||.|||||.||||||
BL00119___iol 395 CTCCTTCAGAAAAAAGGGGACGAATGGTTACCCAAAATGAATTAATGATT 444
BSNT_01069___ 445 GTATCAGGACAGCTTTTGGCCTTTGTTTTTAATGCGATCCTTGGCACAAC 494
||.||.||||||||||||||.|||...||.|||||.|||||.||.||.||
BL00119___iol 445 GTCTCCGGACAGCTTTTGGCATTTACCTTCAATGCCATCCTCGGAACCAC 494
BSNT_01069___ 495 AATGGGAGAGAACTCCCATGTGTGGAGGTTTATGCTGGTCATTGCGTCAC 544
||||||.||...|||.|||||.|||.|.|..|||||||.||||||..||.
BL00119___iol 495 AATGGGCGATTCCTCACATGTTTGGCGTTACATGCTGGCCATTGCCGCAG 544
BSNT_01069___ 545 TTCCAGCCTTGTTCCTGTTTTTCGGCATGATCAGAATGCCCGAGAGTCCC 594
|.||.||..|.|||.||||.||.||.|||.|.|||||||||||.|||||.
BL00119___iol 545 TCCCGGCTGTATTCTTGTTCTTTGGTATGCTGAGAATGCCCGAAAGTCCG 594
BSNT_01069___ 595 CGCTGGCTTGTTTCTAAAGGAAGAAAAGAAGATGCTTTGCGTGTATTGAA 644
||.||||||||.||||||||.|.|||.||||..||..||.||||..||||
BL00119___iol 595 CGATGGCTTGTCTCTAAAGGGAAAAATGAAGCGGCGCTGGGTGTTCTGAA 644
BSNT_01069___ 645 AAAAATCAGGGATGAAAAGCGGGCAGCAGCTG--AGCTGCAAGAAATTGA 692
||.||||.|..|.|||||..|||| |||...| ||.||| .|||||.||
BL00119___iol 645 AAGAATCCGCAAGGAAAAAAGGGC-GCATTCGGAAGTTGC-TGAAATCGA 692
BSNT_01069___ 693 ATTCGCTTTCAAAAAAGAAGATC--AGCTTGAAAAAGCGACGTTTAAAGA 740
|...||..|||..||||| ||| |..|..|||||||||..|.|||.||
BL00119___iol 693 AGCTGCAGTCATGAAAGA--ATCGGAAATGAAAAAAGCGAATTATAAGGA 740
BSNT_01069___ 741 TCTTTCGGTCCCATGGGTGCGCCGTATTGTGTTTATTGGATTAGGGATTG 790
.||..|.||.||.|||||||||||.||.||.|||.|||||.|.||.||.|
BL00119___iol 741 CCTGGCTGTTCCTTGGGTGCGCCGAATCGTATTTCTTGGAATCGGTATCG 790
BSNT_01069___ 791 CGATTGTACAGCAAATTACAGGTGTGAATTCGATAATGTATTATGGGACT 840
|..|.||.|||||.|||||.|||||.||.||.||.||||||||.||.||.
BL00119___iol 791 CTGTCGTTCAGCAGATTACCGGTGTAAACTCTATTATGTATTACGGAACA 840
BSNT_01069___ 841 GAAATTCTAAGAAATTCCGGTTTCCAAACGGAAGCCGCTTTAATCGGAAA 890
||||||||.|.||||.||||.||..||||..||||.||..|.|||||.||
BL00119___iol 841 GAAATTCTTAAAAATGCCGGGTTTGAAACTAAAGCTGCACTCATCGGCAA 890
BSNT_01069___ 891 TATTGCGAATGGCGTGATTTCGGTATTGGCAACATTCGTCGGAATCTGGC 940
||||||.||.||.||.|||||.||||||||.||.|||||.||.||.||||
BL00119___iol 891 TATTGCAAACGGTGTCATTTCAGTATTGGCGACGTTCGTGGGGATTTGGC 940
BSNT_01069___ 941 TGCTGGGAAGAGTGGGGCGCCGGCCGATGCTGATGACAGGCTTGATCGGT 990
|..|.||||.||||||.|||.|.|||||||||.||||.||.||.||.||.
BL00119___iol 941 TTTTAGGAAAAGTGGGACGCAGACCGATGCTGTTGACCGGTTTAATAGGA 990
BSNT_01069___ 991 ACGACAACAGCATTATTGCTAATCGGGATATTCTCACTTGTACTTGAAGG 1040
||||||.||||.||..||||.|||||.||.||||||...||.|||.||||
BL00119___iol 991 ACGACATCAGCTTTGCTGCTTATCGGCATCTTCTCAAACGTCCTTCAAGG 1040
BSNT_01069___ 1041 ATCACCGGCACTTCCGTATGTAGTCCTGTCATTAACGGTCACATTTCTTG 1090
.|||.|.||.|||||.|||||.||.||..|..|.||.||.||.||.||||
BL00119___iol 1041 TTCAGCTGCTCTTCCTTATGTCGTACTTACGCTGACTGTAACCTTCCTTG 1090
BSNT_01069___ 1091 CTTTTCAGCAGGGCGCCATTTCACCAGTGACTTGGCTGATGCTATCTGAA 1140
|.||.||.||.|||||||||||.||.||.||.|||||.|||||.||||||
BL00119___iol 1091 CATTCCAACAAGGCGCCATTTCTCCTGTAACATGGCTCATGCTTTCTGAA 1140
BSNT_01069___ 1141 ATTTTCCCGCTTCGCCTTCGCGGACTGGGAATGGGTGTCACGGTATTCTG 1190
||.||||||||||||.|.|||||.||.||.|||||.|||||.||.||.||
BL00119___iol 1141 ATATTCCCGCTTCGCGTACGCGGCCTCGGGATGGGCGTCACCGTGTTTTG 1190
BSNT_01069___ 1191 TCTGTGGATGGTGAATTTTGCAGTCAGTTTCACGTTTCCGATATTGCTGG 1240
|.|||||||.|..|||||....|||.|.|||.|||||||||||.||||.|
BL00119___iol 1191 TTTGTGGATCGCCAATTTCTTTGTCGGATTCTCGTTTCCGATACTGCTTG 1240
BSNT_01069___ 1241 CAGCTATCGGCCTGTCCACAACGTTCTTTATCTTCGTTGGATTAGGAATT 1290
.|.|.||.||.||||||.|.||.||||..||.||.||.|||.|.|||.|
BL00119___iol 1241 AATCGATTGGGCTGTCCTCGACATTCTACATTTTTGTCGGACTTGGACT- 1289
BSNT_01069___ 1291 TGCTCTGTC--TTG--TTTGTGAAGAGGTTTTTGCCGGAAACGAAAGGGC 1336
|||.|| ||| ||.|||||.|..||..|.||.|||||.|||||.|
BL00119___iol 1290 ---TCTTTCCATTGCATTCGTGAAAAAATTCCTTCCTGAAACAAAAGGCC 1336
BSNT_01069___ 1337 TTTCGCTTGAGCAGCTGGAGGAAAACTTCCGCGCTTAT------------ 1374
|..|||||||.|||||.|||.|.||.||||||...|||
BL00119___iol 1337 TCACGCTTGAACAGCTTGAGCATAATTTCCGCAACTATAAATCGGAAACA 1386
BSNT_01069___ 1375 GATCACGGCGGGGCAA-----AGAAGGATTCTGGGGCTGAAGTGATTGGA 1419
|..||..||||.|||| |.|| ||.|.||.|||
BL00119___iol 1387 GCACAAAGCGGTGCAAGCGCTAAAA----TCAGCGGGTGA---------- 1422
BSNT_01069___ 1420 TAA 1422
BL00119___iol 1422 --- 1422
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