Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06237 and BL00090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:12
# Commandline: needle
# -asequence dna-align/BSNT_06237___yybO.1.5803.seq
# -bsequence dna-align/BL00090___yybO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06237___yybO-BL00090___yybO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06237___yybO-BL00090___yybO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06237___yybO
# 2: BL00090___yybO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1338
# Identity: 959/1338 (71.7%)
# Similarity: 959/1338 (71.7%)
# Gaps: 63/1338 ( 4.7%)
# Score: 3417.0
#
#
#=======================================
BSNT_06237___ 1 ATGACAGAGGAGGTTTTCATCATGAGTCAAGAGCGCGTGAAACGGCCTGG 50
|||...|||||||..|..||||||||.||
BL00090___yyb 1 ---------------------ATGGCGCAAGAGCTGGAAAAACGGCCGGG 29
BSNT_06237___ 51 GCATACCAGATGGTACATATCTTCGTTACTTAGCGGCATTATTATTCTTA 100
||||||.||||||||.||.|||||.|||.|.|||.||||.||.|||.|.|
BL00090___yyb 30 GCATACAAGATGGTATATTTCTTCTTTATTAAGCAGCATGATCATTTTAA 79
BSNT_06237___ 101 ATTATTTTGACCGAGTGGCCATCTCGGTAGCGGCCCCTGCGATACAAGAT 150
||||.||||||||.||.|||||.||.||.||.||.|||||||||||.|||
BL00090___yyb 80 ATTACTTTGACCGTGTTGCCATTTCAGTCGCAGCTCCTGCGATACAGGAT 129
BSNT_06237___ 151 TCGTTTCACCTTACTGCAACTGAACTCGGCATCGTGTTTTCCATTTACAC 200
||.|||||..|.||.|||||..||.|.||||||||.||||||||.||.||
BL00090___yyb 130 TCCTTTCAATTGACGGCAACCCAATTAGGCATCGTCTTTTCCATCTATAC 179
BSNT_06237___ 201 CTATTCCTATACACTGATGCAGCTGCCTGTCGGAAGTTTGCTGGACCGTT 250
|||.||.||.||.|||||||||.|.||.||.||.|||.|..||||....|
BL00090___yyb 180 CTACTCATACACGCTGATGCAGATTCCGGTGGGGAGTCTCTTGGATAAGT 229
BSNT_06237___ 251 TTGGGGTCGCATGGGTCACGAGGGTTGGAATGACAATATGGAGCTTTTTA 300
..||.||.||.|||||.||.|||||.||||||||..|.|||||.|||.||
BL00090___yyb 230 ACGGCGTTGCCTGGGTGACAAGGGTCGGAATGACCTTGTGGAGTTTTCTA 279
BSNT_06237___ 301 ACGATCCTTCTTGCTTTTTTGCAAGGAAAATTGCTGTTGTATCTGTTCCG 350
||.||..|..|.||||||||.||.||||||.||||..|.|||.|..||.|
BL00090___yyb 280 ACCATTATATTGGCTTTTTTACAGGGAAAACTGCTTCTTTATATTGTCAG 329
BSNT_06237___ 351 GTTTCTCATTGGGCTGACGAGCGCCTCTGCGTTCCCTGCTGCCTCTAAAG 400
.|||.|.||.|||||||||||.||.||.||.||.|||||.||.||.||||
BL00090___yyb 330 ATTTTTAATCGGGCTGACGAGTGCTTCAGCTTTTCCTGCCGCATCCAAAG 379
BSNT_06237___ 401 CAACCGCTCTCTGGTTTCCTCCAAGTGAGCGGGGATTGGCAAACTCACTG 450
||||.||..|.||||||||.||.|.||||||.||..|.||.||.||..||
BL00090___yyb 380 CAACGGCCTTATGGTTTCCGCCTAATGAGCGCGGCCTTGCCAATTCCTTG 429
BSNT_06237___ 451 TTCGATTCGGCCGCCAAGTTTTCAAATGTAATCGGCGCGCCATTGGTCGC 500
||.||.|||||.||||||||..|.|||||.|||||||||||..|.||.||
BL00090___yyb 430 TTTGACTCGGCAGCCAAGTTCGCGAATGTCATCGGCGCGCCTCTCGTAGC 479
BSNT_06237___ 501 CTTTCTTGTCACAACATTTGACTGGCGTGTCGCTTTTTTGACGATTGGAT 550
||||.|.||.||.|||||.||||||||.|.|||||||||.|||||.|||.
BL00090___yyb 480 CTTTTTAGTTACGACATTCGACTGGCGAGCCGCTTTTTTAACGATCGGAA 529
BSNT_06237___ 551 GCATCAATGTGCTGTTTACGATCTTTTTCTGGCAGTATTATGAACAGCCT 600
.|||.|||||.|||||.||..|.|||||||||..|||||||||||||||.
BL00090___yyb 530 TCATTAATGTACTGTTCACCGTATTTTTCTGGTTGTATTATGAACAGCCC 579
BSNT_06237___ 601 GAACGGCACAAACGTATTTCTAAAAGTGAA---CTAAACTATATTCAAAA 647
||.|||||||||||.| |||.|||| ||| ||..|.|||||||||||
BL00090___yyb 580 GATCGGCACAAACGAA--TCTCAAAG-GAAGAGCTCCATTATATTCAAAA 626
BSNT_06237___ 648 ACACAATGCCATTACAACAGAGCAA-ATCCCTTACAAAACGGGCCC---- 692
.||.||||||.| |.|||||.|| ||..|| |..|||||.|.|
BL00090___yyb 627 GCATAATGCCGT---ATCAGAGGAAGATATCT--CGGAACGGACGCTTAT 671
BSNT_06237___ 693 -GCTTTTAAAAAAGC--TTTTCACCAATCGGAAAGTATGGGGCTTAATGA 739
||||| |||||| |..|.||.||.||.|||||||||||..|.||||
BL00090___yyb 672 TGCTTT---AAAAGCGATGCTGACAAACCGTAAAGTATGGGGGCTGATGA 718
BSNT_06237___ 740 TCGGATTTACAGGGTACGGGTATACATTCAACCTGCTGCTCACCTGGCTT 789
||||||||||.||.|||||.|||||||||||||||||..|.||||||||.
BL00090___yyb 719 TCGGATTTACGGGTTACGGCTATACATTCAACCTGCTCTTAACCTGGCTG 768
BSNT_06237___ 790 CCGACTTTCTTTAAACATACATACGGTATGGATCTCATGTCGTCCGGTTT 839
|||||.|||||||||.|.||||||||.|||||..|.|||||.||.||..|
BL00090___yyb 769 CCGACCTTCTTTAAAGAAACATACGGAATGGACATTATGTCCTCAGGGCT 818
BSNT_06237___ 840 ATTTACGGCAGTGCCGTGGCTGATCTCAACCATTTCCGGAATTGCCGTCG 889
.|||||.||.||.||.||||||||.||.||..||||||||||.|..||.|
BL00090___yyb 819 GTTTACAGCGGTTCCCTGGCTGATATCGACGGTTTCCGGAATCGTTGTGG 868
BSNT_06237___ 890 GCGGCTGGCTCGTCGATTATTTTATTAAGAAAGGCTATCCTAACACCAAG 939
||||.|||||||||||||.|||.|||.|.||.||..||.|.||.||.|||
BL00090___yyb 869 GCGGATGGCTCGTCGATTTTTTAATTCAAAAGGGGCATTCGAATACAAAG 918
BSNT_06237___ 940 GTGTACCGAACCGTAATCATAGTCGGAATGAGCTTTGGCTTTTTCTTTTT 989
||.||||..|||.|.|||.||.||||.||||||.||||.|||..||||.|
BL00090___yyb 919 GTATACCAGACCATTATCGTAATCGGCATGAGCCTTGGATTTGCCTTTCT 968
BSNT_06237___ 990 AGGCTCCATTCTGACGAACAATATTACCGTAGCCATTATTTGCATTTCCA 1039
.||..|..||.|.|||.||||.||.||..|.||.||.||||||||||||.
BL00090___yyb 969 GGGAGCTGTTTTCACGCACAACATCACGATTGCGATCATTTGCATTTCCG 1018
BSNT_06237___ 1040 TCGGACTCGCCGGAATTTCAGCAACCGCTCCGGTCGGCTGGTCCATCTCC 1089
||||..|.||||||||.||.||.|||||.||..||||||||||.||.||.
BL00090___yyb 1019 TCGGCTTAGCCGGAATATCTGCGACCGCGCCTATCGGCTGGTCGATATCA 1068
BSNT_06237___ 1090 GCAGAACTCGCGCCGATCGGTTCCGTATCCATGCTGAGCTCCATGGTGAA 1139
||.||..|.||.|||.|.||||||.|.||..||||.||.||.|||||.||
BL00090___yyb 1069 GCCGATATTGCACCGGTTGGTTCCATCTCTCTGCTCAGTTCAATGGTCAA 1118
BSNT_06237___ 1140 TCTCGCAAATAACCTGTTCGGAGGCATTATTGCTGCGTCACTGACAGGGT 1189
|.|.|||||||||.|.||||||||.|||||.||.|..|||.|.||.||.|
BL00090___yyb 1119 TTTGGCAAATAACTTATTCGGAGGGATTATCGCGGTTTCATTAACGGGCT 1168
BSNT_06237___ 1190 ATTTGTTTGATGTGACAGGCTCCTTTACCCTCAGCTTTCTGGTAGCTGGT 1239
||.||.|.||||||||.||.||.|||||.|||||||||.|.|||||.||.
BL00090___yyb 1169 ATCTGGTCGATGTGACCGGTTCATTTACGCTCAGCTTTTTAGTAGCCGGA 1218
BSNT_06237___ 1240 TTTGTGCTGTTGCTGGGATTGGTTTTTTATGTGTTTGTATTAGGAGATGT 1289
|||||..|..||||.||..|.||.||.||..|....||..|.||.|||.|
BL00090___yyb 1219 TTTGTATTACTGCTCGGGCTCGTGTTCTACCTCGCAGTCCTCGGCGATAT 1268
BSNT_06237___ 1290 AAAACGAATT----------------AAACTGGAATAA 1311
|||.|||||| ||||..||
BL00090___yyb 1269 AAAGCGAATTCGTATTGGCAAGCAGAAAACCTGA---- 1302
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