Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01290 and BL00088
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:48
# Commandline: needle
# -asequence dna-align/BSNT_01290___nagP.1.5803.seq
# -bsequence dna-align/BL00088___nagP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01290___nagP-BL00088___nagP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01290___nagP-BL00088___nagP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01290___nagP
# 2: BL00088___nagP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1499
# Identity: 924/1499 (61.6%)
# Similarity: 924/1499 (61.6%)
# Gaps: 265/1499 (17.7%)
# Score: 2658.5
#
#
#=======================================
BSNT_01290___ 1 ATGCTTTCATTTTTACAAAAACTCGG----GAAGTCATTTATGCTCCCGA 46
|||.|...||||.|.|||||..|||| | |..|.|||||.||||
BL00088___nag 1 ATGTTGGGATTTCTTCAAAATATCGGCCGCG----CGCTCATGCTGCCGA 46
BSNT_01290___ 47 TTGCGGTTCTGCCTGCGGTTGGAATTATCCTTGCGCTTGGCAGAGAGGAT 96
||||.|||||.|||||.|..||..|..|.||.||.||.||..|.||.||.
BL00088___nag 47 TTGCCGTTCTTCCTGCTGCGGGCCTCCTGCTCGCACTGGGACGGGAAGAC 96
BSNT_01290___ 97 GTATTTAATATCCCGTTTGTCTATCAGGCGG-----GGAC-GGCGGTTTT 140
.|.||.||.||.||||||.|| ||.| |||| ..|..||.|
BL00088___nag 97 CTGTTAAACATTCCGTTTATC------GCTGCTTCAGGACAATCAATTCT 140
BSNT_01290___ 141 TGATCATCTGCCGCTTATTTTTGCGATCGGAATTGCCATCGGCATT-TCA 189
|||.||.||.|||.||||.||||||||.||..||||.||||| ||| |||
BL00088___nag 141 TGACCAACTTCCGATTATCTTTGCGATAGGCGTTGCGATCGG-ATTGTCA 189
BSNT_01290___ 190 AAAGACAGCAATGGGGCCGCGGGTTTATCAGGGGCGATATCG--TATCTG 237
||.||..||.|.||||||||.|.|.|.||.||.|| .|||| |||.|
BL00088___nag 190 AAGGATGGCCACGGGGCCGCCGCTCTGTCCGGAGC--CATCGGTTATTT- 236
BSNT_01290___ 238 ATG-CTTGAC--GCGGCT------------ACAAAGACAATTGATAAAAC 272
|| |.|||| |||||| |.||.||| .||
BL00088___nag 237 -TGTCCTGACAGGCGGCTTAGCAGCCATCAATAAGGAC--CTG------- 276
BSNT_01290___ 273 AAATAACATGGCGGTGTTTGGGGGAATTATTGCCGGTTTAATTGCCG--G 320
|||||||..||..|.||.||.||||||||.||..|..|.|||| |
BL00088___nag 277 ----AACATGGGAGTTCTCGGCGGGATTATTGCAGGCGTTGTCGCCGCCG 322
BSNT_01290___ 321 TTACACCTATAACCGCTTCAAGGATACCAAGCTGCCTGAATATCTCGGAT 370
| ||..|||||||||||.||.|||.|.|||||||||||.|..|||||.|
BL00088___nag 323 T--CATGTATAACCGCTTTAAAGATGCAAAGCTGCCTGACTGGCTCGGTT 370
BSNT_01290___ 371 TTTTCAGTGGCAGACGGCTTGTGCCGATTATAACAGCCATTAT-TACGAT 419
|.|||.|.||.|.|||...|||.||||||||.|||||| ||.| |.|.||
BL00088___nag 371 TCTTCGGCGGAAAACGCAGTGTTCCGATTATGACAGCC-TTCTGTTCCAT 419
BSNT_01290___ 420 CATTTTAGCGGGCATATTCGGAGTCGTCTGGCCGCCGATT---------- 459
||||.|.||.|||||.|||||..||||||| ||||
BL00088___nag 420 CATTCTTGCAGGCATTTTCGGCTTCGTCTG------GATTTATGCACAGC 463
BSNT_01290___ 460 ---CAATCTTGTATCAACTCGTTTGGAGAGTGGATGCT-----CGGGCTC 501
||| ||| ||.|..||||||..|||||..| ||||
BL00088___nag 464 AGGCAA--TTG-----ACGCCATTGGAGGATGGATCATTCATGCGGG--- 503
BSNT_01290___ 502 GGCGGCA-TCGGGGCAGGCATATTCGGCCTTTTCAACAGGCTGTTAATTC 550
|||| |.||||..||.||||||||.|||||.|||||||||.|..|.|
BL00088___nag 504 ---GGCATTAGGGGTCGGGATATTCGGTCTTTTAAACAGGCTGCTTTTGC 550
BSNT_01290___ 551 CGCTTGGCCTTCACCATGTACTGAACAATATTTTCTGGTTCCAATTTGGA 600
||||.||||||||.||..|..|.|||||.||..|||||.|....||||||
BL00088___nag 551 CGCTCGGCCTTCATCACATCTTAAACAACATGGTCTGGATGGTCTTTGGA 600
BSNT_01290___ 601 GAAT--------ATAACGGAGTGACAGGGGATCTGGCGCGCTTTTTCGCG 642
|||| |.||||| |||||| ||...||.||.||.||.
BL00088___nag 601 GAATTTGCAGGCAAAACGG-GTGACA-------TGAACCGGTTCTTTGCC 642
BSNT_01290___ 643 AAAGATCCGACAGCGGGCACATATATGACGGGATTCTTCCCAATCATGAT 692
..||||||.|..||.|||.|.|.||||||.||.||||||||.||||||||
BL00088___nag 643 GGAGATCCAAGCGCCGGCGCCTTTATGACAGGGTTCTTCCCGATCATGAT 692
BSNT_01290___ 693 GTTCGGTCTTCCGGCGGCGTGTCTGGCTATGGTTGTGACTGCGAAGCCGT 742
||||||||||||.||||||||||||||.|||.|||...|||||||
BL00088___nag 693 GTTCGGTCTTCCTGCGGCGTGTCTGGCGATGATTGCCGCTGCGAA----- 737
BSNT_01290___ 743 CTAAA-------CGGAAAGCGACGGCTGGGATGATGATTGGGTTTGCTTT 785
||| ||.|||||.|||||.|||.||.||||.||.||.||.||
BL00088___nag 738 --AAAGCATCGCCGCAAAGCAACGGCCGGGTTGCTGATCGGATTGGCGTT 785
BSNT_01290___ 786 AACGGCGTTTATCACAGGGATTACGGAGCCGATTGAGTTTGCATTTATGT 835
.||..|.|||.|.||.||.||.||.||||||||||||||..||||.||||
BL00088___nag 786 CACATCATTTTTAACCGGAATCACAGAGCCGATTGAGTTCACATTCATGT 835
BSNT_01290___ 836 TTTTATCTCCGCTTTTATACGCTGTTCACGCGGTCTTAACCG-------- 877
|..|.||.||||||.|.|.||.|.||||.||..|.|||||||
BL00088___nag 836 TCCTGTCGCCGCTTCTCTTCGGTATTCATGCCTTGTTAACCGCAAGCGCC 885
BSNT_01290___ 878 -----GGTTATCTTTATTTATCGTCAACTGGCTCGGCATCCGCTCA-GGC 921
.||.|.|..||| ||||||||||| .||| |||
BL00088___nag 886 ATGACCGTGACCAATAT-------------GCTCGGCATCC-ATCACGGC 921
BSNT_01290___ 922 TTCTCTTTTTCAGCCGGAGCTATCGATTATGTGCTCAGCTATGGAATCGC 971
||..|.|||||||||||..|.|||||.|||.|..|.|.||.|||||||||
BL00088___nag 922 TTTACCTTTTCAGCCGGGACGATCGACTATCTCTTAAACTTTGGAATCGC 971
BSNT_01290___ 972 GGAAAAACCGCTGCTTCTGCTTTTGGTAGGTATATGCTATGCAGCGGTA- 1020
...|||.||||||||..|||||..|.|.|||.| || |.|.|.||..||
BL00088___nag 972 CACAAAGCCGCTGCTCTTGCTTCCGCTTGGTCT-TG-TTTACGGCATTAT 1019
BSNT_01290___ 1021 -TACTTTATCGTGTTTTATGTACTGATTA--AGGCTTTGAATTTAAAAAC 1067
||.||.|||.|.||||||.|..||||.| |.|| |.|||||.|||||
BL00088___nag 1020 TTATTTCATCATCTTTTATTTCTTGATAACGAAGC--TCAATTTGAAAAC 1067
BSNT_01290___ 1068 GCCTGGACGGGAAGACGATGATGTGGATGAAGTGCTGGATGAAAATACTG 1117
|||||||||.|||||.||.|||| .|.|.|||||.||.|
BL00088___nag 1068 GCCTGGACGAGAAGATGACGATG------------AGCAGGAAAACACCG 1105
BSNT_01290___ 1118 TT-------------CAGGA---TGTAAAT--GAAAACATCATGCTGA-- 1147
.| ||||| |.||||| ||||.| |.|||.||
BL00088___nag 1106 CTGTCAGCCCTGACACAGGATCGTCTAAATACGAAACC--CTTGCGGACA 1153
BSNT_01290___ 1148 ---------AAGGGCTCGGCGGAAAAGAAAACCTTCAAAC-CATTGATC- 1186
|||.|||.|||||||||||||||.|..|.|| | |||.|
BL00088___nag 1154 AATACATCGAAGCGCTTGGCGGAAAAGAAAACATCGAGACGC--TGAACA 1201
BSNT_01290___ 1187 ATTGCGCCACAAGGCTGCGACTGACTGTGAAGGATACCGCTT---TGGTG 1233
|.||||..||..|.||.||.||.|..||....||| |||| .|.||
BL00088___nag 1202 ACTGCGTGACCCGCCTCCGCCTCAAGGTCCGCGAT---GCTTCCAAGCTG 1248
BSNT_01290___ 1234 GATG-AAGCGCTGCTAAAGAAAGC---AGGCGCAAAAGGGGTT-GTCAAA 1278
|||| |||||| .|.||||.| .||.|| .|||||.|| |||||
BL00088___nag 1249 GATGAAAGCGC----GATGAAATCCATGGGAGC-GAAGGGATTCGTCAA- 1292
BSNT_01290___ 1279 TCGGGCGGGCAATC-------GGTTCAAGTCATTATTGGCCCGAATGTGG 1321
|..||||| |||.||.||.||.||.||..|..|.||.|
BL00088___nag 1293 ------GCTCAATCAGCACGAGGTGCAGGTGATCATCGGTACAGACGTCG 1336
BSNT_01290___ 1322 AAT--TTGCAGCTGAGGAATTGAG---------GGCTGCTGTCAAATAA 1359
||| ||| ||..|.|||.|||| || |||||
BL00088___nag 1337 AATTCTTG--GCGAATGAAATGAGAAAACGTACGG---------AATAA 1374
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