Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05332 and BL00086
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:26
# Commandline: needle
# -asequence dna-align/BSNT_05332___yvoA.1.5803.seq
# -bsequence dna-align/BL00086___yvoA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05332___yvoA-BL00086___yvoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05332___yvoA-BL00086___yvoA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05332___yvoA
# 2: BL00086___yvoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity: 461/837 (55.1%)
# Similarity: 461/837 (55.1%)
# Gaps: 210/837 (25.1%)
# Score: 1088.5
#
#
#=======================================
BSNT_05332___ 1 ATGAATATCAATAAACAATCGCCTATTCCGATTTATTATCAGATTATGGA 50
.|| |||||.|||.|.||.|..|||||||||||.||||||||| ||
BL00086___yvo 1 TTG---ATCAAAAAAGATTCCCACATTCCGATTTACTATCAGATT---GA 44
BSNT_05332___ 51 GCAATTAAAAACCCAAATTAAGAACGGAGAGCTGCAGCCG--------GA 92
| |||.||||||| |.|||| .|||| ||
BL00086___yvo 45 G---------ACCGAAATTAA------AAAGCT--TGCCGAAACAAAAGA 77
BSNT_05332___ 93 TATG-----------CCTC-TTCCTTCCGAGCGCGAATATGCCGAACAAT 130
|.|| |||| |||||||.||..|.||.|..||.|||.|||
BL00086___yvo 78 TTTGAAACCCGGCGACCTCATTCCTTCTGAAAGAGAGTTCGCAGAAAAAT 127
BSNT_05332___ 131 TCGGGATCAGCCGGATGACAGTTCGCCAGGCGCTTTCTAATTTAGTTAAT 180
..|.|.|.|||.|||||||.|||||.||||||.||...|||.|.||.|||
BL00086___yvo 128 ATGAGGTGAGCAGGATGACCGTTCGACAGGCGGTTAACAATCTCGTCAAT 177
BSNT_05332___ 181 GAAGGCTTGCTCTATCGCCTGAAAGGACGGGGCACCTTTGTCAGCAAGCC 230
||||||.|.|||...||.|.|...|||...||.||.|||.|...|.||||
BL00086___yvo 178 GAAGGCATTCTCGTCCGGCAGCGGGGAAAAGGGACATTTATTGCCGAGCC 227
BSNT_05332___ 231 AAAAATGGAACAAGCACTTCAAGGGCTGACAAGCTTTACCGAGGATATGA 280
||||||.||.||..|.||..||||..|||||||||||.|||||||.||||
BL00086___yvo 228 AAAAATTGAGCAGCCTCTCAAAGGATTGACAAGCTTTTCCGAGGACATGA 277
BSNT_05332___ 281 A---AAGCCGCGGG-ATGACACCGGGCAGCA--------GGCTCATTGAT 318
| ||| ||| ||||..||.||||..| ||||
BL00086___yvo 278 AATCAAG----GGGCATGAGGCCCGGCACGAAAATGCTCGGCT------- 316
BSNT_05332___ 319 TATCAGCTTATTGATTC------AACTGAG--GAGCTCGC-----GGCTA 355
||.|| .|.||.| |.|.||| .|||.||| ||..|
BL00086___yvo 317 --TCGGC---GTCATCCCGTGCGACCAGAGCACAGCGCGCAAACTGGAGA 361
BSNT_05332___ 356 TA--TTAGGCTGCGGGCACCCCTCC-TCTATCCATAAAATCACTCGGGTG 402
|| |.|.| ||| |.||| ||| ||.||.|||..|||.|.
BL00086___yvo 362 TACGTGAAG----GGG----CTTCCGTCT----ATGAAGTCAAACGGATC 399
BSNT_05332___ 403 CGGCTGGCAAATGATATTCCAATGGCGATTGAGTCCTCACATATT----- 447
||.||.||..||||.||.||.||||| ||..|...||.|.||||
BL00086___yvo 400 CGCCTCGCCGATGACATCCCGATGGC--TTATGAAATCTCCTATTTGCCC 447
BSNT_05332___ 448 -CCG-----TTTGA--GCTTG-CGGGTGA-AT--TGAACGAATCGCATTT 485
||| .||.| ||.|| |.|..|| || |||.||.||| ||
BL00086___yvo 448 GCCGACTTCATTAACGGCCTGACCGAAGACATTATGAGCGCATC----TT 493
BSNT_05332___ 486 TCAGTCGT-CGATCTATGATCATATTGAAAGGTACAACAGCATAC----- 529
| || ||| ||||| |.|||| ||||
BL00086___yvo 494 T-----GTACGA-CTATG------TCGAAA-----------ATACGCTCT 520
BSNT_05332___ 530 ------CGATTTCCCGTGC----AAAACAGGAGCTTGAGCCAAGCG-CTG 568
||||...|||.|| .||||| ||.||.|| .||| .||
BL00086___yvo 521 CCCTTACGATCGACCGGGCCGCGCAAACA----CTAGAACC-GGCGATTG 565
BSNT_05332___ 569 CCAC-CACGGAAGA-AGCGAACATTCTTGGTATTCAAAAGGGAGCGCCTG 616
||.| || ||.||| |||||.| .|||.|..||..|..|.||.||.||.|
BL00086___yvo 566 CCTCTCA-GGCAGAGAGCGAGC-CTCTCGACATAGAGGAAGGCGCACCAG 613
BSNT_05332___ 617 TCCTATTAATCAAAC----GAACAACATATCTGCAGAACGGAACTGCTTT 662
||||..|.||..||| ||.| |||.||.|..||||.|...|.||
BL00086___yvo 614 TCCTGCTCATTGAACGCTTGAGC----TATTTGGACGACGGCAGACCGTT 659
BSNT_05332___ 663 TGAGCATGCAAAATCTGTATACAGAGGCGACCGTTATACATTTGTCCACT 712
|||....|..|||||.||.||||||||||||||.||||.|||.|||
BL00086___yvo 660 TGAAGTGGTCAAATCCGTTTACAGAGGCGACCGCTATAAATTCGTC---- 705
BSNT_05332___ 713 ATATGGATCGTCTTTCATAA----------------- 732
||.||| ||.|
BL00086___yvo 706 --ATTGAT--------ATGAAGAGGAAAGACCAATGA 732
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