Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05329 and BL00084
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:26
# Commandline: needle
# -asequence dna-align/BSNT_05329___nagA.1.5803.seq
# -bsequence dna-align/BL00084___nagA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05329___nagA-BL00084___nagA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05329___nagA-BL00084___nagA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05329___nagA
# 2: BL00084___nagA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1363
# Identity: 775/1363 (56.9%)
# Similarity: 775/1363 (56.9%)
# Gaps: 329/1363 (24.1%)
# Score: 1826.5
#
#
#=======================================
BSNT_05329___ 1 --------------ATGGCAGAGAGTCT-TCTTATTAAAGACAT-TGCGA 34
||..|| |..|| |.||.|||| |||| |.| |
BL00084___nag 1 GTGAAAACCAAACCATCTCA---ACGCTATATTTTTAA--ACATCTTC-A 44
BSNT_05329___ 35 TCGTGACA--GAAAATGAAGTAATCAAAAACGGCTATGTCGGAATC---- 78
|..|.||| |||||||.|.|.||..||.||||.|.|.| ||
BL00084___nag 45 TATTTACAGTGAAAATGGAATGATAGAAGACGGTTTTCT-----TCTGAC 89
BSNT_05329___ 79 -AATGACGGAAAAATCAGCACAGTCTCAACAGAACGGCCCAAGGAGTCAT 127
||||..|.||||||| .||.|| .||||.||||.|..|.||
BL00084___nag 90 GAATGGAGAAAAAATC----GAGGCT------TACGGACCAATGGCTGAT 129
BSNT_05329___ 128 ATTCAAAAGAGATTCAAGCAC-----------CTGCGGA---TTCCG--- 160
|||| .||.||| .|||| |.||.|| |||||
BL00084___nag 130 ATTC----CAGCTTC-CGCACAAACGGCAGAACAGCTGACATTTCCGGAG 174
BSNT_05329___ 161 ---TT----TTGCTTCCCGGCATGATTGACATTCATATCCACGGCGGC-T 202
|| .||||.||.||||||||.||..|.||.||.||||| ||| .
BL00084___nag 175 AACTTCAAAGTGCTGCCGGGCATGATCGATGTCCACATTCACGG-GGCAA 223
BSNT_05329___ 203 ATGGCGCAGATACAATGGATGCTA--------GCTTTTCCACGCTCGACA 244
|.|||||||||...|||||.|..| |||||.|.| |||
BL00084___nag 224 ACGGCGCAGATGTCATGGACGGAACAGCCGAGGCTTTGCAA------ACA 267
BSNT_05329___ 245 TCATGTCGTCAAG-ACTGCCCGAAGAAGGCACGACGAGCTTTTTAGCCAC 293
|||.| |.||| .|||||..|||||||.|||||.|||||..|.||.||
BL00084___nag 268 --ATGGC-TGAAGCCCTGCCGAAAGAAGGAACGACAAGCTTCCTGGCGAC 314
BSNT_05329___ 294 AACGATTACCCAA---------------GAGCATGGGAACATTTCT--CA 326
.|||||.|||||| |||||||.| || ||
BL00084___nag 315 GACGATGACCCAAGATAAAGCCACGATCGAGCATGCG-------CTGGCA 357
BSNT_05329___ 327 AGCTTT----GGTGAACGCAAGAGAGTGGAAAGCGG--CTGAAGAGTCCT 370
|.|.|| |||..|.|.|||...|.||| ||| |.|||.|
BL00084___nag 358 AACGTTCACCGGTATAAGGAAGCCGGCGGA---CGGCCCGGAACA----- 399
BSNT_05329___ 371 CTTTATTAGGTGCAGAACTGCTCGGCATTCATTTAGAGGGCCCCTTTGTT 420
||.|||.|..|.|||.||||.|||||||||||.|||.||
BL00084___nag 400 -----------GCCGAAGTATTAGGCGTTCACTTAGAGGGCCCTTTTATT 438
BSNT_05329___ 421 TCGCCTAAAAGAGC----CGGAGCGCAGCCAAAGGAGTG-GATTAGGCCT 465
|| |.||.||| |||.||.|||||...||| || .||||...|.
BL00084___nag 439 TC----AGAAAAGCGGTGCGGCGCCCAGCCGCCGGA-TGACATTATAGCG 483
BSNT_05329___ 466 TCGGATGTTGCGCTTTTCAAAAAGTGGCAGCAGGAGGCGGGC-------G 508
.|||||.||.||.|.||.|||.|.||||||| || |
BL00084___nag 484 CCGGATCTTTCGTTATTTAAAGAATGGCAGC---------GCATCTCAGG 524
BSNT_05329___ 509 GACTGATCA--AAATT-GTTACACTTGCGCCGGA----GGAGGATCAGCA 551
||.| |.|| ||||| ||.|||||||||||.|| |.|||.||
BL00084___nag 525 GAAT-AACATTAAATTAGTCACACTTGCGCCAGAGCTGGAAGGGTC---- 569
BSNT_05329___ 552 TTTTGAACTGATCCGCCATTTGAAAGACGAATCGATTATCGCGTCCATGG 601
|||.|||||.||...|..||||||.||...|..|.|.|||||.|||
BL00084___nag 570 TTTGGAACTAATTTCCTTTTTGAAGGAAACAGGGGTCATCGCATCC---- 615
BSNT_05329___ 602 GGCACACGG--ATGCCGATTCCGCATTGCTGTCGGATGCCGCAA------ 643
||| || ||.|||| ||| |||| |.|||
BL00084___nag 616 -GCA---GGCCATTCCGA---CGC--------CGGA---CTCAAAGAGAT 647
BSNT_05329___ 644 --AAGCAGG------GGCGAG------CCATATGACTCATCTGTACAACG 679
||||.|| |||..| ||||.|.||.|||.|||.|||||
BL00084___nag 648 GGAAGCCGGGATTAAGGCCGGCCTCTCCCATGTCACCCATTTGTTCAACG 697
BSNT_05329___ 680 CGATGAGCCCGTTTCATCACCGAGAGCC-CGGAGTGATCGGAACGGCGCT 728
..|||.|...|.|.||.|||||.||||| .|||.|| .|||.| |||||
BL00084___nag 698 GCATGCGGGGGCTGCACCACCGCGAGCCGGGGACTG-CCGGTA--GCGCT 744
BSNT_05329___ 729 GGCC--CATGATG-------GGTTTGTGACAGAGCTTATTGCCGATGGCA 769
...| ||||||| || |.||..|.||||||||.||||
BL00084___nag 745 CTTCTGCATGATGAACTGAAGG-------CTGAAGTCATTGCCGACGGCA 787
BSNT_05329___ 770 TTCA----CTCCCATCCTTTAGCTGCAAAGCTTGCTTTTTTGGCGAAAGG 815
|.|| |.|||..||.|.|.| |||||.||.|||..| .|||..
BL00084___nag 788 TCCATGTTCACCCTGCCGTCATC----AAGCTGGCATTTCAG--CAAAAA 831
BSNT_05329___ 816 CAGCAGCAAG--CTCATTTTAATTACCGATTCCATGAGGGCAAAAGGCCT 863
|||.|..||| .|||||||||||||.|||.|||||.|.||||||.||.|
BL00084___nag 832 CAGAAAGAAGGCATCATTTTAATTACGGATGCCATGCGCGCAAAATGCTT 881
BSNT_05329___ 864 GAAAGACGG--CGTATATGAGTTTGGCGGCCA--AAGTGTGACGGTAAGA 909
||||.|.|| |.|||| ..||.|||||.|| |.|||| ..||||.|
BL00084___nag 882 GAAAAATGGAACCTATA--CATTAGGCGGACAGGAGGTGT--TCGTAAAA 927
BSNT_05329___ 910 GGACGA-ACAGCACTTCTTTC-AGACGGAACCCTTGCCGGTTCGATCCTC 957
|| ||| |.||| |.|.||.| .||.||.||.||||||||....|||.|.
BL00084___nag 928 GG-CGATAAAGC-CGTTTTACGGGATGGTACGCTTGCCGGCAGCATCTTG 975
BSNT_05329___ 958 AAAATGAACGAAGGC-GCACGGCATATGCGTGAGTTTAC---AAATTGCT 1003
||.|||||| .|||| ||||.|.|.|||...||.||||| |..|| |.
BL00084___nag 976 AAGATGAAC-CAGGCTGCACTGAACATGATGGATTTTACGGGATGTT-CA 1023
BSNT_05329___ 1004 CTTGGACGGATATAG-CTAATATAACTTCTG-CAAACGCGGCCAAACAGC 1051
||.|.| |||||.| || |.||.||..|.| |||.| |.||||.|||||
BL00084___nag 1024 CTCGAA--GATATCGTCT-ACATGACAGCAGTCAATC-CTGCCAGACAGC 1069
BSNT_05329___ 1052 TGGGCATCTT--TGACCGAAAAGGCAGTGTGACTGTG-GGAAAAGATGCA 1098
| .|||.|| ||||||.||||||||..| ||.|.| ||.||||||||.
BL00084___nag 1070 T--TCATATTTATGACCGGAAAGGCAGCAT-ACGGAGCGGGAAAGATGCC 1116
BSNT_05329___ 1099 GATTTGGTGATTGTCA-----------GCAGTGATTGCGAGGTGATTCTC 1137
||||||.|.|||.|.| |.||| .|||| |.
BL00084___nag 1117 GATTTGATCATTTTAAATGAAAAAAATGAAGT--------TGTGA---TG 1155
BSNT_05329___ 1138 ACCATTTGCCGCGGAAA-----CATTGCATTTATATCCAA---GGAGG-C 1178
||..||||| ||| .|||||.||.| .||| ||||| .
BL00084___nag 1156 ACGCTTTGC-----AAAGGCGTGATTGCTTTCA---GCAAAAGGGAGGTT 1197
BSNT_05329___ 1179 TGACCAGATATGA 1191
|.||| ||||
BL00084___nag 1198 TCACC----ATGA 1206
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