Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00008 and BL00082
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:40
# Commandline: needle
# -asequence dna-align/BSNT_00008___gyrA.1.5803.seq
# -bsequence dna-align/BL00082___gyrA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00008___gyrA-BL00082___gyrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00008___gyrA-BL00082___gyrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00008___gyrA
# 2: BL00082___gyrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2483
# Identity: 1941/2483 (78.2%)
# Similarity: 1941/2483 (78.2%)
# Gaps: 31/2483 ( 1.2%)
# Score: 7525.5
#
#
#=======================================
BSNT_00008___ 1 ATGAGTGAACAAAACACACCACAAGTTCGTGAAATAAATATCAGTCAGGA 50
||||||||||||.|.|..||.|||||||..|||.|.||||||||||||||
BL00082___gyr 1 ATGAGTGAACAACATAAGCCCCAAGTTCAGGAAGTCAATATCAGTCAGGA 50
BSNT_00008___ 51 AATGCGTACGTCCTTCTTGGATTATGCAATGAGCGTTATCGTGTCCCGTG 100
||||||.||.||.||.||.|||||.||||||||.|||||.||.|||||.|
BL00082___gyr 51 AATGCGCACATCTTTTTTAGATTACGCAATGAGTGTTATTGTTTCCCGCG 100
BSNT_00008___ 101 CTCTTCCGGATGTTCGAGACGGTTTAAAACCGGTTCATAGACGGATTTTG 150
||||||||||.||..||||||||.|.||.|||||.||.|||.|.||.|||
BL00082___gyr 101 CTCTTCCGGACGTAAGAGACGGTCTGAAGCCGGTGCACAGAAGAATATTG 150
BSNT_00008___ 151 TATGCAATGAATGATTTAGGCATGACAAGTGACAAGCCTTATAAAAAATC 200
|||||.|||||.||..|.||.|||||||||||.|||||.|||||||||||
BL00082___gyr 151 TATGCGATGAACGACCTTGGGATGACAAGTGATAAGCCGTATAAAAAATC 200
BSNT_00008___ 201 CGCGCGTATCGTTGGAGAAGTTATCGGGAAATACCACCCGCACGGTGATT 250
|||||||||.||.||.|||||||||||.||.||||||||.||||||||||
BL00082___gyr 201 CGCGCGTATTGTCGGCGAAGTTATCGGTAAGTACCACCCTCACGGTGATT 250
BSNT_00008___ 251 CAGCGGTATATGAATCCATGGTTAGAATGGCTCAGGATTTCAACTACCGT 300
|.||.||.||.|||.|||||||.||||||||.||||||||.|||||.||.
BL00082___gyr 251 CTGCTGTTTACGAAGCCATGGTCAGAATGGCGCAGGATTTTAACTATCGG 300
BSNT_00008___ 301 TATATGCTCGTTGACGGTCATGGAAACTTCGGTTCTGTTGACGGAGACTC 350
||.|||||||||.|.||.||||||||||||||||||||||||||.|||||
BL00082___gyr 301 TACATGCTCGTTCAAGGCCATGGAAACTTCGGTTCTGTTGACGGCGACTC 350
BSNT_00008___ 351 AGCGGCGGCCATGCGTTATACAGAAGCAAGAATGTCTAAAATCTCAATGG 400
.||.||||||||||||||.||||||||.||||||||||||||.|||||||
BL00082___gyr 351 GGCTGCGGCCATGCGTTACACAGAAGCGAGAATGTCTAAAATATCAATGG 400
BSNT_00008___ 401 AGATTCTTCGCGACATCACAAAAGACACAATCGATTACCAGGATAACTAT 450
|.|||||.||||||||||..|||||||||||||||||||||||.||||||
BL00082___gyr 401 AAATTCTGCGCGACATCAATAAAGACACAATCGATTACCAGGACAACTAT 450
BSNT_00008___ 451 GACGGGTCAGAAAGAGAACCTGTCGTTATGCCTTCAAGGTTCCCGAATCT 500
|||||.||.||||.|||.||.||.|||||||||.|.||.||.|||||..|
BL00082___gyr 451 GACGGTTCGGAAAAAGAGCCGGTTGTTATGCCTGCGAGATTTCCGAACTT 500
BSNT_00008___ 501 GCTCGTGAACGGTGCTGCCGGCATTGCGGTAGGTATGGCAACAAACATTC 550
|||.||.|||||.||.|||||.|||||.|||||||||||.||||||||.|
BL00082___gyr 501 GCTTGTCAACGGAGCGGCCGGTATTGCTGTAGGTATGGCCACAAACATCC 550
BSNT_00008___ 551 CTCCTCACCAGCTGGGAGAAATCATTGACGGTGTACTTGCTGTCAGTGAG 600
|.||.||.|||||.||.|||.|||||||||||||..|.||.|||||..|.
BL00082___gyr 551 CGCCGCATCAGCTCGGTGAAGTCATTGACGGTGTTTTGGCGGTCAGCAAA 600
BSNT_00008___ 601 AATCCGGACATTACCATTCCAGAGCTTATGGAAGTCATTCCAGGGCCTGA 650
||.||.||.||.||..||||.||..|.|||||..|||||||.||.||.||
BL00082___gyr 601 AACCCTGATATCACGCTTCCGGAATTGATGGAGATCATTCCTGGACCCGA 650
BSNT_00008___ 651 TTTCCCGACCGCGGGTCAAATCTTGGGACGCAGCGGTATCCGGAAAGCAT 700
.|||||.||.||.||.|..|||||||||.|.|||||||||||.||.||.|
BL00082___gyr 651 CTTCCCTACAGCAGGGCTGATCTTGGGAAGAAGCGGTATCCGAAAGGCCT 700
BSNT_00008___ 701 ACGAATCAGGCCGAGGCTCTATCACGATCCGGGCAAAAGCTGAGATCGAA 750
|.|||.|||||||.||.||.||.|||.|.||.||.||||||.|.||||||
BL00082___gyr 701 ATGAAACAGGCCGGGGATCAATTACGCTTCGAGCCAAAGCTCAAATCGAA 750
BSNT_00008___ 751 CAAACATCTTCGGGTAAA---GAAAGAATTATCGTTACAGAGTTACCTTA 797
.||||||||||.||.||| |.||..|||| ||||.||..||||.||
BL00082___gyr 751 GAAACATCTTCCGGCAAACCGGTAATCATTA---TTACGGAAATACCGTA 797
BSNT_00008___ 798 CCAAGTAAATAAGGCGAAATTAATTGAGAAAATTGCTGATCTCGTAAGGG 847
||||||.|||||.||.|...|.||.||.|||||.||.|||||.||..|.|
BL00082___gyr 798 CCAAGTGAATAAAGCAAGGCTGATCGAAAAAATCGCCGATCTAGTGCGCG 847
BSNT_00008___ 848 ACAAAAAGATAGAGGGTATCACAGATCTGCGTGATGAGTCAGATCGTACA 897
|.||.||.||.||.||.||.||.|||||.||.|||||.|||||.||.|..
BL00082___gyr 848 ATAAGAAAATCGACGGCATTACGGATCTCCGCGATGAATCAGACCGAAAC 897
BSNT_00008___ 898 GGTATGAGAATTGTCATTGAAATAAGACGCGATGCCAATGCAAATGTCAT 947
||.|||.|.||.|||||||||.|.|||.|.|||||.|||||.|||||..|
BL00082___gyr 898 GGAATGCGCATCGTCATTGAACTGAGAAGGGATGCAAATGCCAATGTACT 947
BSNT_00008___ 948 CTTAAACAATCTGTACAAACAAACTGCTCTACAAACATCTTTTGGCATCA 997
.|||||.||..|||||||.||.||.|||||.||||||||.||.|||||.|
BL00082___gyr 948 GTTAAATAACTTGTACAAGCAGACCGCTCTTCAAACATCATTCGGCATTA 997
BSNT_00008___ 998 ACCTGCTTGCACTTGTTGATGGCCAGCCGAAAGT-TTTAACTCTTAAGCA 1046
|.||..|.||.||||||||.|||||||||||||| ||.|.|| |.|||||
BL00082___gyr 998 ATCTTTTGGCGCTTGTTGACGGCCAGCCGAAAGTATTGAGCT-TGAAGCA 1046
BSNT_00008___ 1047 ATGCCTGGAGCATTACCTTGACCACCAAAAAGTTGTCATTAGACGCCGTA 1096
.||.|||||||||||.||.|||||.||||||||.||.||.|||.|.||||
BL00082___gyr 1047 GTGTCTGGAGCATTATCTCGACCATCAAAAAGTCGTGATCAGAAGGCGTA 1096
BSNT_00008___ 1097 CTGCTTATGAATTGCGTAAAGCAGAAGCGAGAGCTCATA-TCTTGGAAGG 1145
||||.|..||..|.||.|||||.||||||.|.||.|||| |||| ||.||
BL00082___gyr 1097 CTGCATTCGAGCTTCGCAAAGCGGAAGCGCGGGCCCATATTCTT-GAGGG 1145
BSNT_00008___ 1146 ATTGAGAGTTGCACTGGATCATCTCGATGCAGTTATCTCCCTTATCCGTA 1195
.||||||||.||.||.|||||.||.||||.||||||.|||||.||..|.|
BL00082___gyr 1146 CTTGAGAGTGGCGCTTGATCACCTTGATGAAGTTATTTCCCTAATTAGAA 1195
BSNT_00008___ 1196 ATTCTCAAACGGCTGAAATTGCGAGAACAGGTTTAATTGAACAATTCTCA 1245
||||.||||||||||||||.||.|.||..||.||.|||||..|.||.||.
BL00082___gyr 1196 ATTCGCAAACGGCTGAAATCGCAAAAAACGGATTGATTGAGAAGTTTTCT 1245
BSNT_00008___ 1246 CTGACAGAGAAGCAAGCACAAGCGATCCTTGACATGAGGCTCCAGCGTTT 1295
.||||.||.||.||.||.||.|||||..|.||||||.|.|||||||||||
BL00082___gyr 1246 TTGACTGAAAAACAGGCCCAGGCGATTTTGGACATGCGTCTCCAGCGTTT 1295
BSNT_00008___ 1296 AACGGGACTGGAACGTGAAAAGATCGAAGAAGAATACCAATCTCTTGTTA 1345
|||.||.||||||||.|||||.||||||||.|||||.|||...||||||.
BL00082___gyr 1296 AACAGGGCTGGAACGCGAAAAAATCGAAGAGGAATATCAAAGCCTTGTTG 1345
BSNT_00008___ 1346 AATTAATTGCAGAGCTAAAAGACATCTTGGCAAATGAATATAAAGTGCTT 1395
|..|.||||||||||||||||..|||||.|||.|.|||.|.|||||.|||
BL00082___gyr 1346 AGCTGATTGCAGAGCTAAAAGCAATCTTAGCAGACGAAGAGAAAGTTCTT 1395
BSNT_00008___ 1396 GAGATCATTCGTGAAGAACTCACGGAAATCAAAGAGCGTTTTAACGATGA 1445
||.||||||||.|||||.|||||.|||.|.||||||||.|||||.|||||
BL00082___gyr 1396 GAAATCATTCGGGAAGAGCTCACAGAAGTTAAAGAGCGCTTTAATGATGA 1445
BSNT_00008___ 1446 AAGACGTACTGAGATCGTCACTTCTGGACTGGAGACAATTGAAGATGAAG 1495
..|.||||||||.|||||.||.||.||.||.|||||.|||||.|||||||
BL00082___gyr 1446 GCGCCGTACTGAAATCGTGACATCGGGCCTTGAGACGATTGAGGATGAAG 1495
BSNT_00008___ 1496 ATCTCATCGAGAGAGAAAATATCGTAGTTACTCTGACGCACAACGGATAC 1545
||||||||..|.|.||.||||||||.||.|||.|.||.||.||||||||.
BL00082___gyr 1496 ATCTCATCACGCGCGAGAATATCGTTGTGACTTTAACTCATAACGGATAT 1545
BSNT_00008___ 1546 GTCAAACGTCTTCCTGCATCAACTTACCGCAGTCAAAAACGGGGCGGAAA 1595
.||||||||||.|||.|.||.|||||||||||.||||||||||||||.||
BL00082___gyr 1546 ATCAAACGTCTGCCTTCTTCCACTTACCGCAGCCAAAAACGGGGCGGGAA 1595
BSNT_00008___ 1596 AGGTGTACAAGGTATGGGAACAAACGAAGATGATTTCGTTGAACATTTGA 1645
|||..|.||.||.|||||.|||||.|||||.||.|||||||||||..|||
BL00082___gyr 1596 AGGCATTCAGGGCATGGGTACAAATGAAGACGACTTCGTTGAACACCTGA 1645
BSNT_00008___ 1646 TATCTACGTCAACTCATGACACGATTCTCTTCTTCTCGAACAAGGGGAAA 1695
|.||.||.||.||.||||||||.|||||||||||||||||.||.|||||.
BL00082___gyr 1646 TTTCAACATCCACCCATGACACCATTCTCTTCTTCTCGAATAAAGGGAAG 1695
BSNT_00008___ 1696 GTGTATCGTGCAAAAGGGTATGAAATCCCTGAATACGGCAGAACGGCAAA 1745
|||||.|||||.|||||.|||||.||||||||||.|||..|.||.||.||
BL00082___gyr 1696 GTGTACCGTGCGAAAGGATATGAGATCCCTGAATTCGGACGGACAGCGAA 1745
BSNT_00008___ 1746 AGGAATCCCGATTATTAACCTGCTGGAGGTAGAAAAGGGTGAGTGGATCA 1795
.|||||.|||||||||||||||||.||.||.|||||.||.||.|||||||
BL00082___gyr 1746 GGGAATTCCGATTATTAACCTGCTTGAAGTGGAAAAAGGAGAATGGATCA 1795
BSNT_00008___ 1796 ACGCGATTATTCCAGTCACG-GAATTCAATGCGGAGCTTTACCTTTTCTT 1844
|||||||||||||.|| |.| |||||..|||..|||..|||..|.|||||
BL00082___gyr 1796 ACGCGATTATTCCGGT-AGGCGAATTTGATGACGAGTCTTATTTGTTCTT 1844
BSNT_00008___ 1845 CACTACAAAGCATGGGGTTTCAAAACGAACATCACTATCTCAATTCGCTA 1894
|||.|||||.||.||..|.||||||||.|||.|.||.|||||||||||.|
BL00082___gyr 1845 CACGACAAAACACGGAATATCAAAACGCACACCGCTTTCTCAATTCGCGA 1894
BSNT_00008___ 1895 ATATCCGCAACAATGGTCTAATCGCTCTGAGTCTTCGTGAAGACGATGAA 1944
||||||||||.|||||..|.|||||..|.||.||.||.||.||.||||||
BL00082___gyr 1895 ATATCCGCAATAATGGATTGATCGCCTTAAGCCTCCGCGATGAGGATGAA 1944
BSNT_00008___ 1945 CTGATGGGTGTACGTCTGACTGATGGCACAAAACAAATCATCATTGGAAC 1994
.||||.|.|||.||.|||||.|||||.|..||||||||.||.||.||.||
BL00082___gyr 1945 TTGATCGCTGTCCGCCTGACGGATGGAAATAAACAAATTATTATCGGCAC 1994
BSNT_00008___ 1995 GAAAAACGGTTTACTGATCCGTTTCCCTGAAACAGATGTTCGGGAGATGG 2044
|||.||||||.|.||.|||||||||||||||||||||||..||.|.||||
BL00082___gyr 1995 GAAGAACGGTCTGCTCATCCGTTTCCCTGAAACAGATGTAAGGCAAATGG 2044
BSNT_00008___ 2045 GAAGAACTGCGGCGGGCGTAAAAGGCATCACCCTGACGGATGACGACGTT 2094
|||||||.||.||.|||||.||.|||||||..|||||.||||||||.|||
BL00082___gyr 2045 GAAGAACAGCAGCCGGCGTTAAGGGCATCAATCTGACAGATGACGATGTT 2094
BSNT_00008___ 2095 GTTGTCGGCATGGAGATATTAGAGGAAGAATCACACGTCCTTATCGTTAC 2144
|||||||||||||||||.||.||.||.||.||||||||.||.|||||.||
BL00082___gyr 2095 GTTGTCGGCATGGAGATTTTGGAAGAGGATTCACACGTGCTAATCGTAAC 2144
BSNT_00008___ 2145 TGAAAAAGGGTACGGAAAACGAACTCCGGCTGAAGAGTACAGAACCCAAA 2194
||||||.||.||||||||||..||.||.|||..|||.|||||....||||
BL00082___gyr 2145 TGAAAAGGGCTACGGAAAACTGACGCCCGCTTCAGAATACAGGGTGCAAA 2194
BSNT_00008___ 2195 GCCGGGGCGGAAAAGGACTCAAAA-CAGCGAAAATCACCGAGAACAACGG 2243
||||.||.||||||||.||.|||| |.|| ||||||||.||.||.|||||
BL00082___gyr 2195 GCCGCGGAGGAAAAGGGCTGAAAACCTGC-AAAATCACAGAAAATAACGG 2243
BSNT_00008___ 2244 CCAACTAGTAGCAGTGAAAGCTACTAAAGGTGAAGAGGATCTAATGATTA 2293
....||.||..||||||||||.||.|.|||.|||||.|||.|||||||.|
BL00082___gyr 2244 ATCTCTTGTGACAGTGAAAGCAACGACAGGAGAAGAAGATTTAATGATCA 2293
BSNT_00008___ 2294 TTACAGCTAGCGGCGTACTCATCAGAATGGACATCAATGATATCTCCATC 2343
|.|||||.||||||||..||||..|.|||||.||.||.||||||||||..
BL00082___gyr 2294 TCACAGCAAGCGGCGTGATCATTCGGATGGATATTAAAGATATCTCCACG 2343
BSNT_00008___ 2344 ACCGGACGTGTCACTCAAGGTGTGCGTCTCATCAGAATGGCAGAAGAAGA 2393
||||||||.|||||||||||||||||.||.|||.|..|.|..|||.||||
BL00082___gyr 2344 ACCGGACGCGTCACTCAAGGTGTGCGACTTATCCGCTTAGGTGAACAAGA 2393
BSNT_00008___ 2394 GCATGTTGCTACAGTAGCTTTAGTAGAGAAAAACGAAGAAGATGAGAATG 2443
||||||.||.||.||.||||||||.||.| ||||.||.|||||.|
BL00082___gyr 2394 GCATGTCGCGACTGTCGCTTTAGTTGAAA------AAGATGAAGAGAACG 2437
BSNT_00008___ 2444 A---AGAAGAACAAGAAGAAGTGTGA------- 2466
| |||||||||.|||| .|..|||
BL00082___gyr 2438 ATTCAGAAGAACAGGAAG-CGGATGAATCATAA 2469
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